HEADER SIGNALING PROTEIN 15-FEB-05 1WYL TITLE SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN NEDD9 INTERACTING PROTEIN TITLE 2 WITH CALPONIN HOMOLOGY AND LIM DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD9 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM COMPND 3 DOMAINS; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CH DOMAIN; COMPND 6 SYNONYM: MOLECULE INTERACTING WITH CASL PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NICAL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040315-92; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CH DOMAIN, MICAL, NEDD9, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WYL 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WYL 1 VERSN REVDAT 1 15-AUG-05 1WYL 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN NEDD9 JRNL TITL 2 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WYL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM CH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 49.80 34.75 REMARK 500 1 SER A 32 -59.28 -129.13 REMARK 500 1 LEU A 48 -39.94 -34.09 REMARK 500 1 LEU A 53 168.53 -44.69 REMARK 500 1 PRO A 55 81.18 -69.81 REMARK 500 1 ALA A 63 -39.18 -36.33 REMARK 500 1 ALA A 66 -70.54 -62.36 REMARK 500 1 LYS A 72 -70.32 -73.89 REMARK 500 1 ASN A 76 -63.81 -96.53 REMARK 500 1 GLU A 77 -70.91 -73.71 REMARK 500 1 PRO A 82 93.54 -69.79 REMARK 500 1 ALA A 86 -35.20 -33.93 REMARK 500 1 PHE A 109 45.39 -108.75 REMARK 500 2 SER A 2 99.61 -43.86 REMARK 500 2 ALA A 21 150.98 -41.53 REMARK 500 2 LEU A 48 -35.68 -37.96 REMARK 500 2 LEU A 53 179.88 -53.98 REMARK 500 2 PRO A 55 6.63 -69.77 REMARK 500 2 SER A 56 -38.32 -31.14 REMARK 500 2 GLU A 65 -36.21 -39.41 REMARK 500 2 ASN A 76 -62.10 -91.86 REMARK 500 2 GLU A 77 -72.27 -76.11 REMARK 500 2 ILE A 80 87.95 -67.14 REMARK 500 2 PRO A 82 93.90 -69.65 REMARK 500 2 ALA A 91 -35.68 -36.52 REMARK 500 2 SER A 107 -30.80 -36.26 REMARK 500 2 PHE A 109 35.18 -99.80 REMARK 500 3 VAL A 26 108.39 -58.51 REMARK 500 3 SER A 32 -70.98 -105.42 REMARK 500 3 ALA A 36 33.08 -83.85 REMARK 500 3 LEU A 48 -38.45 -39.12 REMARK 500 3 LEU A 53 178.30 -48.47 REMARK 500 3 PRO A 55 5.02 -69.80 REMARK 500 3 SER A 56 -31.04 -35.27 REMARK 500 3 LEU A 61 -72.58 -114.29 REMARK 500 3 GLU A 77 -71.99 -80.48 REMARK 500 3 PRO A 82 87.14 -69.74 REMARK 500 3 SER A 107 -32.46 -36.57 REMARK 500 3 PHE A 109 47.73 -106.17 REMARK 500 4 SER A 3 106.80 -43.67 REMARK 500 4 VAL A 26 108.75 -52.70 REMARK 500 4 VAL A 28 99.01 -62.50 REMARK 500 4 SER A 32 -72.04 -109.50 REMARK 500 4 LEU A 53 -177.17 -50.35 REMARK 500 4 PRO A 55 4.91 -69.87 REMARK 500 4 SER A 56 -35.35 -32.86 REMARK 500 4 LEU A 61 -71.26 -116.38 REMARK 500 4 ALA A 66 -71.88 -62.09 REMARK 500 4 THR A 67 -37.08 -36.75 REMARK 500 4 LYS A 72 -70.15 -73.79 REMARK 500 REMARK 500 THIS ENTRY HAS 261 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000142 RELATED DB: TARGETDB DBREF 1WYL A 8 110 UNP Q8TDZ2 MICA1_HUMAN 510 612 SEQADV 1WYL GLY A 1 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 2 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 3 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL GLY A 4 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 5 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 6 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL GLY A 7 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 111 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL GLY A 112 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL PRO A 113 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 114 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL SER A 115 UNP Q8TDZ2 CLONING ARTIFACT SEQADV 1WYL GLY A 116 UNP Q8TDZ2 CLONING ARTIFACT SEQRES 1 A 116 GLY SER SER GLY SER SER GLY THR GLN GLU GLU LEU LEU SEQRES 2 A 116 ARG TRP CYS GLN GLU GLN THR ALA GLY TYR PRO GLY VAL SEQRES 3 A 116 HIS VAL SER ASP LEU SER SER SER TRP ALA ASP GLY LEU SEQRES 4 A 116 ALA LEU CYS ALA LEU VAL TYR ARG LEU GLN PRO GLY LEU SEQRES 5 A 116 LEU GLU PRO SER GLU LEU GLN GLY LEU GLY ALA LEU GLU SEQRES 6 A 116 ALA THR ALA TRP ALA LEU LYS VAL ALA GLU ASN GLU LEU SEQRES 7 A 116 GLY ILE THR PRO VAL VAL SER ALA GLN ALA VAL VAL ALA SEQRES 8 A 116 GLY SER ASP PRO LEU GLY LEU ILE ALA TYR LEU SER HIS SEQRES 9 A 116 PHE HIS SER ALA PHE LYS SER GLY PRO SER SER GLY HELIX 1 1 THR A 8 TYR A 23 1 16 HELIX 2 2 GLY A 38 GLN A 49 1 12 HELIX 3 3 GLU A 57 LEU A 61 5 5 HELIX 4 4 GLY A 62 GLU A 77 1 16 HELIX 5 5 SER A 85 GLY A 92 1 8 HELIX 6 6 ASP A 94 PHE A 109 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1