data_1X0F # _entry.id 1X0F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X0F pdb_00001x0f 10.2210/pdb1x0f/pdb RCSB RCSB024222 ? ? WWPDB D_1000024222 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1IQT 'The 20 structures with the lowest energy of the C-terminal RNA-binding domain of hnRNP D' unspecified PDB 1HD0 'The minimized average structure of the N-terminal RNA-binding domain of hnRNP D' unspecified PDB 1HD1 'The structures of the N-terminal RNA-binding domain of hnRNP D' unspecified PDB 1WTB ;The 20 structures with the lowest energy of the C-terminal RNA-binding domain of hnRNP D with d(TAGG) (database for torsion angles not used) ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X0F _pdbx_database_status.recvd_initial_deposition_date 2005-03-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Enokizono, Y.' 1 'Konishi, Y.' 2 'Nagata, K.' 3 'Ouhashi, K.' 4 'Uesugi, S.' 5 'Ishikawa, F.' 6 'Katahira, M.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D. ; J.Biol.Chem. 280 18862 18870 2005 JBCHA3 US 0021-9258 0071 ? 15734733 10.1074/jbc.M411822200 1 'Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by hnRNP D' J.Biol.Chem. 280 ? ? 2005 JBCHA3 US 1083-351X 0071 ? 15734733 10.1074/jbc.M411822200 2 ;Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA ; J.Mol.Biol. 311 973 988 2001 JMOBAK UK 0022-2836 0070 ? 11531333 10.1006/jmbi.2001.4862 3 'Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0' J.Mol.Biol. 287 221 237 1999 JMOBAK UK 0022-2836 0070 ? 10080887 10.1006/jmbi.1999.2616 4 ;Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n ; Mol.Cell.Biol. 13 4301 4310 1993 MCEBD4 US 0270-7306 2044 ? 8321232 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Enokizono, Y.' 1 ? primary 'Konishi, Y.' 2 ? primary 'Nagata, K.' 3 ? primary 'Ouhashi, K.' 4 ? primary 'Uesugi, S.' 5 ? primary 'Ishikawa, F.' 6 ? primary 'Katahira, M.' 7 ? 1 'Enokizono, Y.' 8 ? 1 'Konishi, Y.' 9 ? 1 'Nagata, K.' 10 ? 1 'Ouhashi, K.' 11 ? 1 'Uesugi, S.' 12 ? 1 'Ishikawa, F.' 13 ? 1 'Katahira, M.' 14 ? 2 'Katahira, M.' 15 ? 2 'Miyanoiri, Y.' 16 ? 2 'Enokizono, Y.' 17 ? 2 'Matsuda, G.' 18 ? 2 'Nagata, T.' 19 ? 2 'Ishikawa, F.' 20 ? 2 'Uesugi, S.' 21 ? 3 'Nagata, T.' 22 ? 3 'Kurihara, Y.' 23 ? 3 'Matsuda, G.' 24 ? 3 'Saeki, J.' 25 ? 3 'Kohno, T.' 26 ? 3 'Yanagida, Y.' 27 ? 3 'Ishikawa, F.' 28 ? 3 'Uesugi, S.' 29 ? 3 'Katahira, M.' 30 ? 4 'Ishikawa, F.' 31 ? 4 'Matunis, M.J.' 32 ? 4 'Dreyfuss, G.' 33 ? 4 'Cech, T.R.' 34 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*TP*AP*GP*G)-3'" 1230.854 1 ? ? ? ? 2 polymer man 'Heterogeneous nuclear ribonucleoprotein D0' 9103.628 1 ? ? 'C-terminal RNA-binding domain' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'hnRNP D0, AU-rich element RNA-binding protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DG)' TAGG B ? 2 'polypeptide(L)' no no VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 2 1 VAL n 2 2 LYS n 2 3 LYS n 2 4 ILE n 2 5 PHE n 2 6 VAL n 2 7 GLY n 2 8 GLY n 2 9 LEU n 2 10 SER n 2 11 PRO n 2 12 ASP n 2 13 THR n 2 14 PRO n 2 15 GLU n 2 16 GLU n 2 17 LYS n 2 18 ILE n 2 19 ARG n 2 20 GLU n 2 21 TYR n 2 22 PHE n 2 23 GLY n 2 24 GLY n 2 25 PHE n 2 26 GLY n 2 27 GLU n 2 28 VAL n 2 29 GLU n 2 30 SER n 2 31 ILE n 2 32 GLU n 2 33 LEU n 2 34 PRO n 2 35 MET n 2 36 ASP n 2 37 ASN n 2 38 LYS n 2 39 THR n 2 40 ASN n 2 41 LYS n 2 42 ARG n 2 43 ARG n 2 44 GLY n 2 45 PHE n 2 46 CYS n 2 47 PHE n 2 48 ILE n 2 49 THR n 2 50 PHE n 2 51 LYS n 2 52 GLU n 2 53 GLU n 2 54 GLU n 2 55 PRO n 2 56 VAL n 2 57 LYS n 2 58 LYS n 2 59 ILE n 2 60 MET n 2 61 GLU n 2 62 LYS n 2 63 LYS n 2 64 TYR n 2 65 HIS n 2 66 ASN n 2 67 VAL n 2 68 GLY n 2 69 LEU n 2 70 SER n 2 71 LYS n 2 72 CYS n 2 73 GLU n 2 74 ILE n 2 75 LYS n 2 76 VAL n 2 77 ALA n 2 78 MET n 2 79 SER n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HNRPD_HUMAN Q14103 2 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 181 ? 2 PDB 1X0F 1X0F 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1X0F A 1 ? 79 ? Q14103 181 ? 259 ? 181 259 2 2 1X0F B 1 ? 4 ? 1X0F 2 ? 5 ? 2 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 2 2 1 3D_15N-separated_TOCSY 2 3 1 4D_13C-separated_NOESY 4 4 1 '3D HNHA' 2 5 1 '3D HNCA' 1 6 1 HCCH-TOCSY 4 7 1 HCCH-COSY 4 8 1 '1H, 15N-HSQC' 2 9 1 2D_ROESY 5 10 1 2D_NOESY 5 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM U-13C, 15N hnRNP D BD2, 2.4mM DNA, 20mM Sodium Phosphate, 10mM Deuterated DTT, 1mM Sodium Azide' '95% H2O/5% D2O' 2 '2mM U-15N hnRNP D BD2, 2.4mM DNA, 20mM Sodium Phosphate, 10mM Deuterated DTT, 1mM Sodium Azide' '95% H2O/5% D2O' 3 '2mM hnRNP D BD2, 2.4mM DNA, 20mM Sodium Phosphate, 10mM Deuterated DTT, 1mM Sodium Azide' '95% H2O/5% D2O' 4 '2mM U-13C, 15N hnRNP D BD2, 2.4mM DNA, 20mM Sodium Phosphate, 10mM Deuterated DTT, 1mM Sodium Azide' '100% D2O' 5 '2mM U-15N hnRNP D BD2, 2.4mM DNA, 20mM Sodium Phosphate, 10mM Deuterated DTT, 1mM Sodium Azide' '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X0F _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1X0F _pdbx_nmr_details.text 'This structure was determined using 2D homonuclear and 3D heteronuclear techniques.' # _pdbx_nmr_ensemble.entry_id 1X0F _pdbx_nmr_ensemble.conformers_calculated_total_number 228 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X0F _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' X-PLOR 3.851 BRUNGER 1 processing NMRPipe ? ? 2 processing XwinNMR ? ? 3 refinement X-PLOR 3.851 BRUNGER 4 # _exptl.entry_id 1X0F _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X0F _struct.title 'Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X0F _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'RNA-binding domain, DNA-binding domain, RRM, hnRNP D, AUF1, Telomere, Complex, structural genomics, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU B 15 ? PHE B 25 ? GLU A 195 PHE A 205 1 ? 11 HELX_P HELX_P2 2 GLU B 53 ? GLU B 61 ? GLU A 233 GLU A 241 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR B 64 ? VAL B 67 ? TYR A 244 VAL A 247 A 2 SER B 70 ? LYS B 75 ? SER A 250 LYS A 255 A 3 LYS B 3 ? GLY B 8 ? LYS A 183 GLY A 188 A 4 PHE B 45 ? PHE B 50 ? PHE A 225 PHE A 230 A 5 VAL B 28 ? PRO B 34 ? VAL A 208 PRO A 214 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS B 65 ? O HIS A 245 N CYS B 72 ? N CYS A 252 A 2 3 O LYS B 75 ? O LYS A 255 N PHE B 5 ? N PHE A 185 A 3 4 N VAL B 6 ? N VAL A 186 O CYS B 46 ? O CYS A 226 A 4 5 O THR B 49 ? O THR A 229 N GLU B 29 ? N GLU A 209 # _database_PDB_matrix.entry_id 1X0F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X0F _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T B . n A 1 2 DA 2 3 3 DA A B . n A 1 3 DG 3 4 4 DG G B . n A 1 4 DG 4 5 5 DG G B . n B 2 1 VAL 1 181 181 VAL VAL A . n B 2 2 LYS 2 182 182 LYS LYS A . n B 2 3 LYS 3 183 183 LYS LYS A . n B 2 4 ILE 4 184 184 ILE ILE A . n B 2 5 PHE 5 185 185 PHE PHE A . n B 2 6 VAL 6 186 186 VAL VAL A . n B 2 7 GLY 7 187 187 GLY GLY A . n B 2 8 GLY 8 188 188 GLY GLY A . n B 2 9 LEU 9 189 189 LEU LEU A . n B 2 10 SER 10 190 190 SER SER A . n B 2 11 PRO 11 191 191 PRO PRO A . n B 2 12 ASP 12 192 192 ASP ASP A . n B 2 13 THR 13 193 193 THR THR A . n B 2 14 PRO 14 194 194 PRO PRO A . n B 2 15 GLU 15 195 195 GLU GLU A . n B 2 16 GLU 16 196 196 GLU GLU A . n B 2 17 LYS 17 197 197 LYS LYS A . n B 2 18 ILE 18 198 198 ILE ILE A . n B 2 19 ARG 19 199 199 ARG ARG A . n B 2 20 GLU 20 200 200 GLU GLU A . n B 2 21 TYR 21 201 201 TYR TYR A . n B 2 22 PHE 22 202 202 PHE PHE A . n B 2 23 GLY 23 203 203 GLY GLY A . n B 2 24 GLY 24 204 204 GLY GLY A . n B 2 25 PHE 25 205 205 PHE PHE A . n B 2 26 GLY 26 206 206 GLY GLY A . n B 2 27 GLU 27 207 207 GLU GLU A . n B 2 28 VAL 28 208 208 VAL VAL A . n B 2 29 GLU 29 209 209 GLU GLU A . n B 2 30 SER 30 210 210 SER SER A . n B 2 31 ILE 31 211 211 ILE ILE A . n B 2 32 GLU 32 212 212 GLU GLU A . n B 2 33 LEU 33 213 213 LEU LEU A . n B 2 34 PRO 34 214 214 PRO PRO A . n B 2 35 MET 35 215 215 MET MET A . n B 2 36 ASP 36 216 216 ASP ASP A . n B 2 37 ASN 37 217 217 ASN ASN A . n B 2 38 LYS 38 218 218 LYS LYS A . n B 2 39 THR 39 219 219 THR THR A . n B 2 40 ASN 40 220 220 ASN ASN A . n B 2 41 LYS 41 221 221 LYS LYS A . n B 2 42 ARG 42 222 222 ARG ARG A . n B 2 43 ARG 43 223 223 ARG ARG A . n B 2 44 GLY 44 224 224 GLY GLY A . n B 2 45 PHE 45 225 225 PHE PHE A . n B 2 46 CYS 46 226 226 CYS CYS A . n B 2 47 PHE 47 227 227 PHE PHE A . n B 2 48 ILE 48 228 228 ILE ILE A . n B 2 49 THR 49 229 229 THR THR A . n B 2 50 PHE 50 230 230 PHE PHE A . n B 2 51 LYS 51 231 231 LYS LYS A . n B 2 52 GLU 52 232 232 GLU GLU A . n B 2 53 GLU 53 233 233 GLU GLU A . n B 2 54 GLU 54 234 234 GLU GLU A . n B 2 55 PRO 55 235 235 PRO PRO A . n B 2 56 VAL 56 236 236 VAL VAL A . n B 2 57 LYS 57 237 237 LYS LYS A . n B 2 58 LYS 58 238 238 LYS LYS A . n B 2 59 ILE 59 239 239 ILE ILE A . n B 2 60 MET 60 240 240 MET MET A . n B 2 61 GLU 61 241 241 GLU GLU A . n B 2 62 LYS 62 242 242 LYS LYS A . n B 2 63 LYS 63 243 243 LYS LYS A . n B 2 64 TYR 64 244 244 TYR TYR A . n B 2 65 HIS 65 245 245 HIS HIS A . n B 2 66 ASN 66 246 246 ASN ASN A . n B 2 67 VAL 67 247 247 VAL VAL A . n B 2 68 GLY 68 248 248 GLY GLY A . n B 2 69 LEU 69 249 249 LEU LEU A . n B 2 70 SER 70 250 250 SER SER A . n B 2 71 LYS 71 251 251 LYS LYS A . n B 2 72 CYS 72 252 252 CYS CYS A . n B 2 73 GLU 73 253 253 GLU GLU A . n B 2 74 ILE 74 254 254 ILE ILE A . n B 2 75 LYS 75 255 255 LYS LYS A . n B 2 76 VAL 76 256 256 VAL VAL A . n B 2 77 ALA 77 257 257 ALA ALA A . n B 2 78 MET 78 258 258 MET MET A . n B 2 79 SER 79 259 259 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-05 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 2 1 HH A TYR 201 ? ? ND1 A HIS 245 ? ? 1.45 3 1 O A GLY 187 ? ? H A GLU 253 ? ? 1.60 4 2 O A GLU 200 ? ? H A GLY 204 ? ? 1.46 5 3 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 6 3 HZ2 A LYS 183 ? ? OG1 A THR 229 ? ? 1.48 7 3 H A VAL 247 ? ? O A SER 250 ? ? 1.52 8 4 O A GLU 200 ? ? H A GLY 204 ? ? 1.43 9 4 H A VAL 247 ? ? O A SER 250 ? ? 1.58 10 5 O A GLU 200 ? ? H A GLY 204 ? ? 1.41 11 6 "H2''" B DG 4 ? ? "O5'" B DG 5 ? ? 1.60 12 7 O A GLU 200 ? ? H A GLY 204 ? ? 1.46 13 7 O A GLY 187 ? ? H A GLU 253 ? ? 1.59 14 8 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 15 9 O A GLU 200 ? ? H A GLY 204 ? ? 1.43 16 9 O A GLY 187 ? ? H A GLU 253 ? ? 1.55 17 9 "H4'" B DA 3 ? ? "O5'" B DG 4 ? ? 1.56 18 10 O A GLU 200 ? ? H A GLY 204 ? ? 1.42 19 10 "H4'" B DA 3 ? ? "O5'" B DG 4 ? ? 1.50 20 10 O A ARG 223 ? ? H A PHE 225 ? ? 1.55 21 10 O A GLY 187 ? ? H A GLU 253 ? ? 1.58 22 11 O A GLU 200 ? ? H A GLY 204 ? ? 1.42 23 12 O A GLU 200 ? ? H A GLY 204 ? ? 1.42 24 12 O A LEU 249 ? ? HZ3 A LYS 251 ? ? 1.43 25 12 HZ2 A LYS 183 ? ? OG1 A THR 229 ? ? 1.57 26 12 O A GLY 187 ? ? H A GLU 253 ? ? 1.57 27 13 HZ1 A LYS 183 ? ? OG1 A THR 229 ? ? 1.47 28 13 HH A TYR 201 ? ? ND1 A HIS 245 ? ? 1.54 29 13 "H4'" B DA 3 ? ? "O5'" B DG 4 ? ? 1.56 30 14 O A GLU 200 ? ? H A GLY 204 ? ? 1.47 31 14 "H2''" B DG 4 ? ? "O5'" B DG 5 ? ? 1.48 32 15 O A GLU 200 ? ? H A GLY 204 ? ? 1.46 33 15 O A GLY 187 ? ? H A GLU 253 ? ? 1.59 34 16 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 35 16 O A GLY 187 ? ? H A GLU 253 ? ? 1.59 36 17 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 37 17 "H4'" B DA 3 ? ? "O5'" B DG 4 ? ? 1.50 38 17 H A VAL 247 ? ? O A SER 250 ? ? 1.59 39 18 O A GLU 200 ? ? H A GLY 204 ? ? 1.44 40 18 H A VAL 247 ? ? O A SER 250 ? ? 1.54 41 19 "H4'" B DA 3 ? ? "O5'" B DG 4 ? ? 1.44 42 19 OD1 A ASP 216 ? ? H A THR 219 ? ? 1.46 43 19 O A GLU 200 ? ? H A GLY 204 ? ? 1.51 44 19 HH A TYR 201 ? ? ND1 A HIS 245 ? ? 1.52 45 20 O A GLU 200 ? ? H A GLY 204 ? ? 1.49 46 20 H A VAL 247 ? ? O A SER 250 ? ? 1.51 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 190 ? ? -45.40 -177.41 2 1 ASP A 192 ? ? 160.55 77.65 3 1 GLU A 195 ? ? -48.10 -17.81 4 1 LYS A 221 ? ? -51.92 -179.22 5 1 VAL A 256 ? ? -32.87 121.76 6 2 SER A 190 ? ? -45.31 179.65 7 2 PRO A 191 ? ? -68.33 4.98 8 2 ASP A 192 ? ? 161.40 76.25 9 2 LYS A 221 ? ? -49.99 -178.67 10 2 VAL A 256 ? ? -32.84 121.46 11 3 SER A 190 ? ? -42.27 172.64 12 3 ASP A 192 ? ? 172.78 73.19 13 3 ASN A 220 ? ? 38.17 46.74 14 3 ARG A 222 ? ? -93.66 46.70 15 3 VAL A 256 ? ? -33.38 123.52 16 4 SER A 190 ? ? -46.70 -175.17 17 4 ASP A 192 ? ? 169.58 74.21 18 4 ASN A 220 ? ? 37.35 59.01 19 4 LYS A 221 ? ? -57.26 -179.62 20 4 ARG A 222 ? ? -99.48 40.17 21 4 LEU A 249 ? ? -133.39 -39.80 22 4 VAL A 256 ? ? -32.78 123.54 23 5 SER A 190 ? ? -44.68 -173.91 24 5 ASP A 192 ? ? 158.20 78.24 25 5 LYS A 221 ? ? -52.40 177.16 26 5 LYS A 243 ? ? -41.90 -81.92 27 5 VAL A 256 ? ? -33.23 124.94 28 6 SER A 190 ? ? -47.71 -173.66 29 6 ASP A 192 ? ? 159.73 76.89 30 6 ASN A 220 ? ? 62.47 71.72 31 6 LYS A 243 ? ? -50.38 -75.53 32 6 VAL A 256 ? ? -33.20 124.51 33 7 SER A 190 ? ? -46.67 -177.45 34 7 ASP A 192 ? ? 171.76 73.00 35 7 PRO A 214 ? ? -49.72 -156.59 36 7 THR A 219 ? ? -145.29 11.24 37 7 ASN A 220 ? ? -148.80 -87.82 38 7 ARG A 222 ? ? -88.13 41.94 39 7 VAL A 256 ? ? -33.16 124.46 40 8 SER A 190 ? ? -46.72 -175.15 41 8 ASP A 192 ? ? 161.86 74.72 42 8 GLU A 195 ? ? -48.00 -15.40 43 8 THR A 219 ? ? -150.24 14.88 44 8 ASN A 220 ? ? 37.70 96.76 45 8 LYS A 243 ? ? -39.98 -74.96 46 8 VAL A 256 ? ? -32.80 121.78 47 9 SER A 190 ? ? -48.50 -173.48 48 9 ASP A 192 ? ? 157.58 78.19 49 9 PRO A 214 ? ? -48.45 -159.99 50 9 THR A 219 ? ? -146.99 13.31 51 9 ASN A 220 ? ? -149.27 -91.75 52 9 ARG A 222 ? ? -85.94 39.57 53 9 VAL A 256 ? ? -33.37 123.80 54 10 SER A 190 ? ? -46.52 -178.16 55 10 ASP A 192 ? ? 159.86 66.17 56 10 GLU A 195 ? ? -48.29 -14.07 57 10 ASN A 220 ? ? 38.06 66.29 58 10 LYS A 221 ? ? -95.01 31.45 59 10 VAL A 256 ? ? -32.75 123.01 60 11 SER A 190 ? ? -46.88 -175.30 61 11 ASP A 192 ? ? 159.60 78.76 62 11 LYS A 221 ? ? -56.25 176.78 63 11 VAL A 256 ? ? -33.55 124.34 64 12 SER A 190 ? ? -49.31 -172.64 65 12 ASP A 192 ? ? 157.43 77.24 66 12 GLU A 195 ? ? -43.90 -19.69 67 12 ASN A 220 ? ? 34.93 34.79 68 12 ARG A 222 ? ? -96.92 36.23 69 12 LYS A 243 ? ? -36.77 -80.70 70 12 VAL A 256 ? ? -32.32 122.58 71 13 SER A 190 ? ? -43.84 -178.90 72 13 PRO A 191 ? ? -67.62 4.05 73 13 ASP A 192 ? ? 161.76 76.04 74 13 GLU A 195 ? ? -47.23 -16.93 75 13 ASN A 220 ? ? 62.69 61.16 76 13 ARG A 222 ? ? -95.31 33.33 77 13 LYS A 243 ? ? -37.89 -73.51 78 13 VAL A 256 ? ? -33.59 127.56 79 14 SER A 190 ? ? -48.00 -169.26 80 14 ASP A 192 ? ? 157.05 76.26 81 14 PRO A 194 ? ? -59.51 109.59 82 14 SER A 210 ? ? -175.16 149.72 83 14 LYS A 243 ? ? -44.81 -74.58 84 14 VAL A 256 ? ? -32.87 123.07 85 15 SER A 190 ? ? -49.34 -172.07 86 15 ASP A 192 ? ? 150.78 79.77 87 15 ARG A 222 ? ? -93.42 37.80 88 15 VAL A 256 ? ? -32.69 121.47 89 16 SER A 190 ? ? -49.83 -170.84 90 16 ASP A 192 ? ? 154.67 77.19 91 16 ASN A 220 ? ? 70.78 56.70 92 16 LYS A 221 ? ? -51.40 -179.77 93 16 VAL A 256 ? ? -31.90 121.71 94 17 SER A 190 ? ? -42.74 178.13 95 17 PRO A 191 ? ? -76.37 26.65 96 17 ASP A 192 ? ? 157.48 73.88 97 17 GLU A 195 ? ? -43.42 -19.81 98 17 ASN A 220 ? ? 70.07 36.90 99 17 VAL A 256 ? ? -32.41 125.06 100 18 SER A 190 ? ? -40.28 173.44 101 18 ASP A 192 ? ? 172.01 74.02 102 18 PRO A 214 ? ? -65.87 -157.36 103 18 THR A 219 ? ? -150.15 15.42 104 18 ASN A 220 ? ? -148.71 -92.13 105 18 ARG A 222 ? ? -92.39 40.23 106 18 LYS A 243 ? ? -38.18 -76.00 107 18 VAL A 256 ? ? -32.67 122.74 108 19 SER A 190 ? ? -47.25 -176.72 109 19 ASP A 192 ? ? 165.63 74.75 110 19 GLU A 195 ? ? -48.53 -14.89 111 19 ASN A 220 ? ? 33.01 58.73 112 19 LYS A 221 ? ? -62.96 -174.50 113 19 ARG A 222 ? ? -85.00 33.87 114 19 VAL A 256 ? ? -32.61 124.14 115 20 SER A 190 ? ? -42.25 -177.96 116 20 ASP A 192 ? ? 165.44 74.91 117 20 PRO A 214 ? ? -61.41 -158.22 118 20 ASN A 220 ? ? -143.71 -85.79 119 20 ARG A 222 ? ? -84.09 41.85 120 20 LEU A 249 ? ? -130.47 -40.03 121 20 VAL A 256 ? ? -32.32 123.62 #