HEADER HYDROLASE 02-MAY-05 1X38 TITLE CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME TITLE 2 EXO1 IN COMPLEX WITH GLUCO-PHENYLIMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-D-GLUCAN EXOHYDROLASE ISOENZYME EXOI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-602; COMPND 5 SYNONYM: BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1; COMPND 6 EC: 3.2.1.58 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513; SOURCE 4 STRAIN: CULTIVAR CLIPPER KEYWDS 2-DOMAIN FOLD, LIGAND-PROTEIN COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HRMOVA,V.A.STRELTSOV,B.J.SMITH,A.VASELLA,J.N.VARGHESE,G.B.FINCHER REVDAT 6 13-NOV-24 1X38 1 REMARK REVDAT 5 25-OCT-23 1X38 1 HETSYN LINK REVDAT 4 29-JUL-20 1X38 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1X38 1 VERSN REVDAT 2 24-FEB-09 1X38 1 VERSN REVDAT 1 20-DEC-05 1X38 0 JRNL AUTH M.HRMOVA,V.A.STRELTSOV,B.J.SMITH,A.VASELLA,J.N.VARGHESE, JRNL AUTH 2 G.B.FINCHER JRNL TITL STRUCTURAL RATIONALE FOR LOW-NANOMOLAR BINDING OF TRANSITION JRNL TITL 2 STATE MIMICS TO A FAMILY GH3 BETA-D-GLUCAN GLUCOHYDROLASE JRNL TITL 3 FROM BARLEY. JRNL REF BIOCHEMISTRY V. 44 16529 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16342944 JRNL DOI 10.1021/BI0514818 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 98154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 217 REMARK 3 SOLVENT ATOMS : 931 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4902 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6679 ; 1.326 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;38.316 ;24.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;12.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.085 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 788 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3575 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2681 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3451 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 718 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3049 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4793 ; 0.986 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2067 ; 1.804 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1886 ; 2.731 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3630 16.7050 30.1810 REMARK 3 T TENSOR REMARK 3 T11: -0.1867 T22: -0.1427 REMARK 3 T33: -0.3296 T12: 0.0046 REMARK 3 T13: 0.0231 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.1662 L22: 0.4899 REMARK 3 L33: 1.3032 L12: -0.2565 REMARK 3 L13: -0.5181 L23: 0.2909 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: -0.0433 S13: -0.1550 REMARK 3 S21: 0.0585 S22: 0.0500 S23: -0.0181 REMARK 3 S31: 0.1395 S32: 0.2045 S33: 0.0935 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5760 31.9590 51.0550 REMARK 3 T TENSOR REMARK 3 T11: -0.1729 T22: -0.1254 REMARK 3 T33: -0.3417 T12: 0.0053 REMARK 3 T13: -0.0026 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1007 L22: 0.5485 REMARK 3 L33: 1.1253 L12: -0.3412 REMARK 3 L13: -0.6021 L23: 0.3690 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: -0.1495 S13: 0.0189 REMARK 3 S21: 0.0781 S22: 0.0059 S23: 0.0362 REMARK 3 S31: 0.0299 S32: 0.0292 S33: 0.0786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127 REMARK 200 MONOCHROMATOR : DIAMOND(111) DOUBLE-BOUNCE REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 34.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1LQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG 400, SODIUM REMARK 280 ACETATE, HEPES-NAOH, PH 7.00, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.20700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.81050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.60350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.27900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.81050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.27900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.27900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.60350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.20700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 6020 O HOH A 6930 2.05 REMARK 500 O1 GOL A 2001 O HOH A 6735 2.16 REMARK 500 O HOH A 6385 O HOH A 6894 2.17 REMARK 500 OG SER A 507 O HOH A 6932 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 63 O HOH A 6243 3554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 64.64 -152.94 REMARK 500 ASN A 221 -154.67 -86.76 REMARK 500 TYR A 271 -61.48 -99.22 REMARK 500 ASP A 421 55.82 -140.41 REMARK 500 ILE A 432 -55.81 69.82 REMARK 500 GLU A 491 -133.47 56.89 REMARK 500 TRP A 544 -133.69 54.50 REMARK 500 GLU A 549 76.26 -100.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LQ2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.70 A REMARK 900 RELATED ID: 1X39 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.80 A DBREF 1X38 A 1 602 GB 4566505 AAD23382 26 627 SEQADV 1X38 LYS A 320 GB 4566505 ASN 345 SEE REMARK 999 SEQRES 1 A 602 ASP TYR VAL LEU TYR LYS ASP ALA THR LYS PRO VAL GLU SEQRES 2 A 602 ASP ARG VAL ALA ASP LEU LEU GLY ARG MET THR LEU ALA SEQRES 3 A 602 GLU LYS ILE GLY GLN MET THR GLN ILE GLU ARG LEU VAL SEQRES 4 A 602 ALA THR PRO ASP VAL LEU ARG ASP ASN PHE ILE GLY SER SEQRES 5 A 602 LEU LEU SER GLY GLY GLY SER VAL PRO ARG LYS GLY ALA SEQRES 6 A 602 THR ALA LYS GLU TRP GLN ASP MET VAL ASP GLY PHE GLN SEQRES 7 A 602 LYS ALA CYS MET SER THR ARG LEU GLY ILE PRO MET ILE SEQRES 8 A 602 TYR GLY ILE ASP ALA VAL HIS GLY GLN ASN ASN VAL TYR SEQRES 9 A 602 GLY ALA THR ILE PHE PRO HIS ASN VAL GLY LEU GLY ALA SEQRES 10 A 602 THR ARG ASP PRO TYR LEU VAL LYS ARG ILE GLY GLU ALA SEQRES 11 A 602 THR ALA LEU GLU VAL ARG ALA THR GLY ILE GLN TYR ALA SEQRES 12 A 602 PHE ALA PRO CYS ILE ALA VAL CYS ARG ASP PRO ARG TRP SEQRES 13 A 602 GLY ARG CYS TYR GLU SER TYR SER GLU ASP ARG ARG ILE SEQRES 14 A 602 VAL GLN SER MET THR GLU LEU ILE PRO GLY LEU GLN GLY SEQRES 15 A 602 ASP VAL PRO LYS ASP PHE THR SER GLY MET PRO PHE VAL SEQRES 16 A 602 ALA GLY LYS ASN LYS VAL ALA ALA CYS ALA LYS HIS PHE SEQRES 17 A 602 VAL GLY ASP GLY GLY THR VAL ASP GLY ILE ASN GLU ASN SEQRES 18 A 602 ASN THR ILE ILE ASN ARG GLU GLY LEU MET ASN ILE HIS SEQRES 19 A 602 MET PRO ALA TYR LYS ASN ALA MET ASP LYS GLY VAL SER SEQRES 20 A 602 THR VAL MET ILE SER TYR SER SER TRP ASN GLY VAL LYS SEQRES 21 A 602 MET HIS ALA ASN GLN ASP LEU VAL THR GLY TYR LEU LYS SEQRES 22 A 602 ASP THR LEU LYS PHE LYS GLY PHE VAL ILE SER ASP TRP SEQRES 23 A 602 GLU GLY ILE ASP ARG ILE THR THR PRO ALA GLY SER ASP SEQRES 24 A 602 TYR SER TYR SER VAL LYS ALA SER ILE LEU ALA GLY LEU SEQRES 25 A 602 ASP MET ILE MET VAL PRO ASN LYS TYR GLN GLN PHE ILE SEQRES 26 A 602 SER ILE LEU THR GLY HIS VAL ASN GLY GLY VAL ILE PRO SEQRES 27 A 602 MET SER ARG ILE ASP ASP ALA VAL THR ARG ILE LEU ARG SEQRES 28 A 602 VAL LYS PHE THR MET GLY LEU PHE GLU ASN PRO TYR ALA SEQRES 29 A 602 ASP PRO ALA MET ALA GLU GLN LEU GLY LYS GLN GLU HIS SEQRES 30 A 602 ARG ASP LEU ALA ARG GLU ALA ALA ARG LYS SER LEU VAL SEQRES 31 A 602 LEU LEU LYS ASN GLY LYS THR SER THR ASP ALA PRO LEU SEQRES 32 A 602 LEU PRO LEU PRO LYS LYS ALA PRO LYS ILE LEU VAL ALA SEQRES 33 A 602 GLY SER HIS ALA ASP ASN LEU GLY TYR GLN CYS GLY GLY SEQRES 34 A 602 TRP THR ILE GLU TRP GLN GLY ASP THR GLY ARG THR THR SEQRES 35 A 602 VAL GLY THR THR ILE LEU GLU ALA VAL LYS ALA ALA VAL SEQRES 36 A 602 ASP PRO SER THR VAL VAL VAL PHE ALA GLU ASN PRO ASP SEQRES 37 A 602 ALA GLU PHE VAL LYS SER GLY GLY PHE SER TYR ALA ILE SEQRES 38 A 602 VAL ALA VAL GLY GLU HIS PRO TYR THR GLU THR LYS GLY SEQRES 39 A 602 ASP ASN LEU ASN LEU THR ILE PRO GLU PRO GLY LEU SER SEQRES 40 A 602 THR VAL GLN ALA VAL CYS GLY GLY VAL ARG CYS ALA THR SEQRES 41 A 602 VAL LEU ILE SER GLY ARG PRO VAL VAL VAL GLN PRO LEU SEQRES 42 A 602 LEU ALA ALA SER ASP ALA LEU VAL ALA ALA TRP LEU PRO SEQRES 43 A 602 GLY SER GLU GLY GLN GLY VAL THR ASP ALA LEU PHE GLY SEQRES 44 A 602 ASP PHE GLY PHE THR GLY ARG LEU PRO ARG THR TRP PHE SEQRES 45 A 602 LYS SER VAL ASP GLN LEU PRO MET ASN VAL GLY ASP ALA SEQRES 46 A 602 HIS TYR ASP PRO LEU PHE ARG LEU GLY TYR GLY LEU THR SEQRES 47 A 602 THR ASN ALA THR MODRES 1X38 ASN A 221 ASN GLYCOSYLATION SITE MODRES 1X38 ASN A 498 ASN GLYCOSYLATION SITE MODRES 1X38 ASN A 600 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET XYP C 6 9 HET FUC C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET XYP D 4 9 HET FUC D 5 10 HET SO4 A3001 5 HET IDD A1001 20 HET GOL A2001 7 HET GOL A2002 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM IDD (5R,6R,7S,8S)-5-(HYDROXYMETHYL)-2-PHENYL-5,6,7,8- HETNAM 2 IDD TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN IDD GLUCO-PHENYLIMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 3 XYP 2(C5 H10 O5) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 SO4 O4 S 2- FORMUL 6 IDD C14 H16 N2 O4 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *931(H2 O) HELIX 1 1 VAL A 3 ASP A 7 5 5 HELIX 2 2 PRO A 11 GLY A 21 1 11 HELIX 3 3 THR A 24 MET A 32 1 9 HELIX 4 4 LEU A 38 ALA A 40 5 3 HELIX 5 5 THR A 41 ASN A 48 1 8 HELIX 6 6 THR A 66 SER A 83 1 18 HELIX 7 7 HIS A 111 THR A 118 1 8 HELIX 8 8 ASP A 120 THR A 138 1 19 HELIX 9 9 ARG A 158 SER A 162 5 5 HELIX 10 10 ASP A 166 MET A 173 1 8 HELIX 11 11 GLU A 175 GLY A 182 1 8 HELIX 12 12 GLY A 210 ILE A 218 5 9 HELIX 13 13 ASN A 226 HIS A 234 1 9 HELIX 14 14 MET A 235 LYS A 244 1 10 HELIX 15 15 ASN A 264 THR A 269 1 6 HELIX 16 16 ILE A 289 THR A 293 5 5 HELIX 17 17 ASP A 299 GLY A 311 1 13 HELIX 18 18 LYS A 320 GLY A 334 1 15 HELIX 19 19 PRO A 338 MET A 356 1 19 HELIX 20 20 ASP A 365 LEU A 372 5 8 HELIX 21 21 LYS A 374 LEU A 389 1 16 HELIX 22 22 ASN A 422 GLY A 428 1 7 HELIX 23 23 THR A 446 VAL A 455 1 10 HELIX 24 24 ASP A 468 GLY A 475 1 8 HELIX 25 25 THR A 490 ASP A 495 5 6 HELIX 26 26 GLY A 505 GLY A 514 1 10 HELIX 27 27 VAL A 530 SER A 537 1 8 HELIX 28 28 GLY A 550 PHE A 558 1 9 HELIX 29 29 SER A 574 LEU A 578 5 5 SHEET 1 A 5 TYR A 142 ALA A 143 0 SHEET 2 A 5 ILE A 91 ILE A 94 1 N ILE A 94 O TYR A 142 SHEET 3 A 5 SER A 52 SER A 55 1 N LEU A 53 O GLY A 93 SHEET 4 A 5 THR A 33 GLU A 36 1 N ILE A 35 O SER A 52 SHEET 5 A 5 ILE A 315 MET A 316 1 O ILE A 315 N GLN A 34 SHEET 1 B 3 CYS A 204 PHE A 208 0 SHEET 2 B 3 THR A 248 ILE A 251 1 O MET A 250 N PHE A 208 SHEET 3 B 3 PHE A 281 ILE A 283 1 O ILE A 283 N VAL A 249 SHEET 1 C 3 ASN A 222 THR A 223 0 SHEET 2 C 3 SER A 255 TRP A 256 1 O SER A 255 N THR A 223 SHEET 3 C 3 VAL A 259 LYS A 260 -1 O VAL A 259 N TRP A 256 SHEET 1 D 6 VAL A 390 ASN A 394 0 SHEET 2 D 6 ALA A 539 TRP A 544 -1 O ALA A 542 N VAL A 390 SHEET 3 D 6 CYS A 518 ILE A 523 1 N LEU A 522 O VAL A 541 SHEET 4 D 6 ALA A 480 GLY A 485 1 N VAL A 482 O VAL A 521 SHEET 5 D 6 LYS A 412 ALA A 416 1 N LEU A 414 O ILE A 481 SHEET 6 D 6 VAL A 460 ALA A 464 1 O VAL A 462 N VAL A 415 SSBOND 1 CYS A 151 CYS A 159 1555 1555 2.16 SSBOND 2 CYS A 513 CYS A 518 1555 1555 2.03 LINK ND2 ASN A 221 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 498 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 600 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O3 NAG C 1 C1 FUC C 7 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O2 BMA C 3 C1 XYP C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O3 NAG D 1 C1 FUC D 5 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O2 BMA D 3 C1 XYP D 4 1555 1555 1.44 CISPEP 1 ALA A 145 PRO A 146 0 5.58 CISPEP 2 LYS A 206 HIS A 207 0 -5.76 CISPEP 3 PHE A 208 VAL A 209 0 -6.15 CISPEP 4 THR A 294 PRO A 295 0 -6.48 CISPEP 5 VAL A 317 PRO A 318 0 -13.35 CISPEP 6 LEU A 404 PRO A 405 0 1.92 CISPEP 7 GLU A 503 PRO A 504 0 3.67 CISPEP 8 LEU A 578 PRO A 579 0 -3.44 CRYST1 100.558 100.558 182.414 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005482 0.00000