HEADER DNA BINDING PROTEIN 04-MAY-05 1X3E TITLE CRYSTAL STRUCTURE OF THE SINGLE-STRANDED DNA-BINDING PROTEIN FROM TITLE 2 MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRAND BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SINGLE-STRANDED DNA-BINDING PROTEIN, SSB, HELIX- COMPND 5 DESTABILIZING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS OLIGONUCLEOTIDE BINDING FOLD, DNA-BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SAIKRISHNAN,G.P.MANJUNATH,P.SINGH,J.JEYAKANTHAN,Z.DAUTER,K.SEKAR, AUTHOR 2 K.MUNIYAPPA,M.VIJAYAN REVDAT 4 13-MAR-24 1X3E 1 REMARK LINK REVDAT 3 13-JUL-11 1X3E 1 VERSN REVDAT 2 24-FEB-09 1X3E 1 VERSN REVDAT 1 15-AUG-05 1X3E 0 JRNL AUTH K.SAIKRISHNAN,G.P.MANJUNATH,P.SINGH,J.JEYAKANTHAN,Z.DAUTER, JRNL AUTH 2 K.SEKAR,K.MUNIYAPPA,M.VIJAYAN JRNL TITL STRUCTURE OF MYCOBACTERIUM SMEGMATIS SINGLE-STRANDED JRNL TITL 2 DNA-BINDING PROTEIN AND A COMPARATIVE STUDY INVOLVING JRNL TITL 3 HOMOLOGUS SSBS: BIOLOGICAL IMPLICATIONS OF STRUCTURAL JRNL TITL 4 PLASTICITY AND VARIABILITY IN QUATERNARY ASSOCIATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1140 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16041080 JRNL DOI 10.1107/S0907444905016896 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SAIKRISHNAN,J.JEYAKANTHAN,J.VENKATESH,N.ACHARYA,K.SEKAR, REMARK 1 AUTH 2 U.VARSHNEY,M.VIJAYAN REMARK 1 TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SINGLE-STRANDED REMARK 1 TITL 2 DNA-BINDING PROTEIN. VARIABILITY IN QUATERNARY STRUCTURE AND REMARK 1 TITL 3 ITS IMPLICATIONS REMARK 1 REF J.MOL.BIOL. V. 331 385 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12888346 REMARK 1 DOI 10.1016/S0022-2836(03)00729-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.SAIKRISHNAN,J.JEYAKANTHAN,J.VENKATESH,N.ACHARYA, REMARK 1 AUTH 2 K.PURNAPATRE,K.SEKAR,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF THE REMARK 1 TITL 2 SINGLE-STRANDED DNA-BINDING PROTEIN FROM MYCOBACTERIUM REMARK 1 TITL 3 TUBERCULOSIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 327 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11807266 REMARK 1 DOI 10.1107/S090744490102008X REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 787 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 2.51000 REMARK 3 B12 (A**2) : -0.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1716 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1619 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2331 ; 1.393 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3715 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 6.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1944 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 363 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 319 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1835 ; 0.258 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1179 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.378 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 102 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.489 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 0.657 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 1.277 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 583 ; 2.174 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 522 ; 3.748 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 21 REMARK 3 RESIDUE RANGE : A 28 A 34 REMARK 3 RESIDUE RANGE : A 53 A 85 REMARK 3 RESIDUE RANGE : A 98 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5792 34.1426 25.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.1762 REMARK 3 T33: 0.0519 T12: 0.0140 REMARK 3 T13: 0.0396 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 4.3740 L22: 2.6145 REMARK 3 L33: 4.2153 L12: 1.6212 REMARK 3 L13: 2.3806 L23: 1.0687 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: 0.4579 S13: -0.1695 REMARK 3 S21: -0.2304 S22: 0.0116 S23: -0.2331 REMARK 3 S31: 0.0566 S32: 0.3611 S33: -0.1023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3520 33.5123 17.2974 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.8927 REMARK 3 T33: 0.5710 T12: 0.1084 REMARK 3 T13: 0.2153 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 143.3532 L22: 17.2400 REMARK 3 L33: 41.2241 L12: -5.2270 REMARK 3 L13: -41.4250 L23: 1.6147 REMARK 3 S TENSOR REMARK 3 S11: 2.9922 S12: -0.8492 S13: 5.1775 REMARK 3 S21: -0.3977 S22: -1.6714 S23: -1.8725 REMARK 3 S31: -1.2669 S32: 3.1015 S33: -1.3209 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8385 43.7401 37.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.5282 REMARK 3 T33: 0.6108 T12: 0.1298 REMARK 3 T13: 0.0227 T23: -0.1459 REMARK 3 L TENSOR REMARK 3 L11: 101.9642 L22: 32.2387 REMARK 3 L33: 10.3398 L12: -24.9189 REMARK 3 L13: -24.8394 L23: 16.2293 REMARK 3 S TENSOR REMARK 3 S11: -0.5223 S12: -2.3022 S13: 2.7946 REMARK 3 S21: 0.7675 S22: -0.0437 S23: 2.7057 REMARK 3 S31: -0.1339 S32: -1.2600 S33: 0.5660 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5613 47.0926 40.0752 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.4425 REMARK 3 T33: 0.5913 T12: -0.1057 REMARK 3 T13: 0.0381 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 3.6739 L22: 31.2894 REMARK 3 L33: 27.2045 L12: -1.4409 REMARK 3 L13: -9.7147 L23: 11.2191 REMARK 3 S TENSOR REMARK 3 S11: 0.9740 S12: -0.7349 S13: 1.4297 REMARK 3 S21: 0.6163 S22: -0.3540 S23: -3.2361 REMARK 3 S31: -1.8144 S32: 1.7863 S33: -0.6201 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 21 REMARK 3 RESIDUE RANGE : B 28 B 34 REMARK 3 RESIDUE RANGE : B 53 B 85 REMARK 3 RESIDUE RANGE : B 98 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1689 21.4555 27.3836 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0894 REMARK 3 T33: 0.1372 T12: 0.0194 REMARK 3 T13: -0.0580 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 5.3941 L22: 3.3688 REMARK 3 L33: 4.3616 L12: -0.5437 REMARK 3 L13: 1.8182 L23: -1.2163 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.0566 S13: -0.3313 REMARK 3 S21: 0.0061 S22: 0.1583 S23: 0.1894 REMARK 3 S31: 0.2253 S32: -0.1006 S33: -0.1916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5441 22.7808 28.0362 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.2044 REMARK 3 T33: 0.1479 T12: -0.0270 REMARK 3 T13: -0.0808 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 101.3661 L22: -3.5723 REMARK 3 L33: 9.2892 L12: 24.6233 REMARK 3 L13: 3.2488 L23: 1.1312 REMARK 3 S TENSOR REMARK 3 S11: 1.1033 S12: -2.2757 S13: -2.8472 REMARK 3 S21: 0.1208 S22: -1.0183 S23: -0.6107 REMARK 3 S31: -0.0188 S32: -0.8051 S33: -0.0850 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4777 10.2104 29.8552 REMARK 3 T TENSOR REMARK 3 T11: 0.5651 T22: 1.1545 REMARK 3 T33: 1.2064 T12: 0.2065 REMARK 3 T13: 0.0156 T23: -0.1771 REMARK 3 L TENSOR REMARK 3 L11: 15.7725 L22: 5.1154 REMARK 3 L33: 3.9229 L12: -15.1453 REMARK 3 L13: 2.0305 L23: -1.6888 REMARK 3 S TENSOR REMARK 3 S11: 0.2286 S12: 0.5814 S13: 0.7587 REMARK 3 S21: -1.1974 S22: -0.1943 S23: -2.1821 REMARK 3 S31: -0.5553 S32: 2.4222 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9661 3.8760 39.8673 REMARK 3 T TENSOR REMARK 3 T11: 1.0797 T22: 0.8696 REMARK 3 T33: 1.0522 T12: -0.3101 REMARK 3 T13: 0.0373 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 17.1891 L22: 46.7703 REMARK 3 L33: -6.8079 L12: 25.3480 REMARK 3 L13: 9.3678 L23: 7.1695 REMARK 3 S TENSOR REMARK 3 S11: 1.1098 S12: 0.2147 S13: -1.0297 REMARK 3 S21: 1.5989 S22: -1.7067 S23: 0.8416 REMARK 3 S31: 0.9912 S32: 0.7596 S33: 0.5969 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM ACETATE, 500MM SODIUM REMARK 280 CHLORIDE, 50MM CADMIUM SULPHATE, 20MM TRIS-HCL, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.61133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.22267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.22267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.61133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.83400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 40 REMARK 465 ASP A 41 REMARK 465 ARG A 42 REMARK 465 GLN A 43 REMARK 465 SER A 44 REMARK 465 GLY A 45 REMARK 465 GLU A 92 REMARK 465 GLY A 93 REMARK 465 SER A 121 REMARK 465 ARG A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 PHE A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 ARG A 138 REMARK 465 GLN A 139 REMARK 465 SER A 140 REMARK 465 GLU A 141 REMARK 465 PRO A 142 REMARK 465 LYS A 143 REMARK 465 ASP A 144 REMARK 465 ASP A 145 REMARK 465 PRO A 146 REMARK 465 TRP A 147 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 ALA A 150 REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 PHE A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 ASP A 160 REMARK 465 ASP A 161 REMARK 465 GLU A 162 REMARK 465 PRO A 163 REMARK 465 PRO A 164 REMARK 465 PHE A 165 REMARK 465 MET B 1 REMARK 465 SER B 121 REMARK 465 ARG B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 PHE B 130 REMARK 465 GLY B 131 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 SER B 137 REMARK 465 ARG B 138 REMARK 465 GLN B 139 REMARK 465 SER B 140 REMARK 465 GLU B 141 REMARK 465 PRO B 142 REMARK 465 LYS B 143 REMARK 465 ASP B 144 REMARK 465 ASP B 145 REMARK 465 PRO B 146 REMARK 465 TRP B 147 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 PRO B 151 REMARK 465 ALA B 152 REMARK 465 SER B 153 REMARK 465 GLY B 154 REMARK 465 SER B 155 REMARK 465 PHE B 156 REMARK 465 SER B 157 REMARK 465 GLY B 158 REMARK 465 ALA B 159 REMARK 465 ASP B 160 REMARK 465 ASP B 161 REMARK 465 GLU B 162 REMARK 465 PRO B 163 REMARK 465 PRO B 164 REMARK 465 PHE B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 MET A 39 CG SD CE REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 TRP A 47 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 47 CZ3 CH2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 THR A 90 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 MET B 39 CG SD CE REMARK 470 PHE B 40 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 PHE B 88 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 4 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ALA A 52 CA - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 ALA A 52 O - C - N ANGL. DEV. = -28.9 DEGREES REMARK 500 ASP B 16 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 104 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 47 116.76 -170.13 REMARK 500 LYS A 48 96.47 66.21 REMARK 500 LEU A 53 105.36 44.03 REMARK 500 ARG A 61 -150.44 71.31 REMARK 500 ARG B 42 -172.21 -61.53 REMARK 500 GLN B 43 70.64 58.14 REMARK 500 SER B 44 172.18 44.31 REMARK 500 GLU B 46 -130.89 -76.73 REMARK 500 ARG B 61 -128.84 57.03 REMARK 500 ARG B 91 4.14 -69.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 52 -27.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE1 REMARK 620 2 GLU A 100 OE2 50.2 REMARK 620 3 HOH A1086 O 108.4 78.3 REMARK 620 4 GLU B 62 OE1 133.4 92.2 84.7 REMARK 620 5 GLU B 62 OE2 93.9 84.3 130.9 50.3 REMARK 620 6 GLU B 65 OE1 97.0 147.2 117.1 116.9 102.2 REMARK 620 7 GLU B 65 OE2 150.5 156.2 81.1 74.0 100.5 55.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X3F RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.70 ANGSTROM REMARK 900 RELATED ID: 1X3G RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 3.00 ANGSTROM DBREF 1X3E A 1 165 UNP Q9AFI5 SSB_MYCSM 1 165 DBREF 1X3E B 1 165 UNP Q9AFI5 SSB_MYCSM 1 165 SEQRES 1 A 165 MET ALA GLY ASP THR THR ILE THR VAL VAL GLY ASN LEU SEQRES 2 A 165 THR ALA ASP PRO GLU LEU ARG PHE THR PRO SER GLY ALA SEQRES 3 A 165 ALA VAL ALA ASN PHE THR VAL ALA SER THR PRO ARG MET SEQRES 4 A 165 PHE ASP ARG GLN SER GLY GLU TRP LYS ASP GLY GLU ALA SEQRES 5 A 165 LEU PHE LEU ARG CYS ASN ILE TRP ARG GLU ALA ALA GLU SEQRES 6 A 165 ASN VAL ALA GLU SER LEU THR ARG GLY SER ARG VAL ILE SEQRES 7 A 165 VAL THR GLY ARG LEU LYS GLN ARG SER PHE GLU THR ARG SEQRES 8 A 165 GLU GLY GLU LYS ARG THR VAL VAL GLU VAL GLU VAL ASP SEQRES 9 A 165 GLU ILE GLY PRO SER LEU ARG TYR ALA THR ALA LYS VAL SEQRES 10 A 165 ASN LYS ALA SER ARG SER GLY GLY GLY GLY GLY GLY PHE SEQRES 11 A 165 GLY SER GLY GLY GLY GLY SER ARG GLN SER GLU PRO LYS SEQRES 12 A 165 ASP ASP PRO TRP GLY SER ALA PRO ALA SER GLY SER PHE SEQRES 13 A 165 SER GLY ALA ASP ASP GLU PRO PRO PHE SEQRES 1 B 165 MET ALA GLY ASP THR THR ILE THR VAL VAL GLY ASN LEU SEQRES 2 B 165 THR ALA ASP PRO GLU LEU ARG PHE THR PRO SER GLY ALA SEQRES 3 B 165 ALA VAL ALA ASN PHE THR VAL ALA SER THR PRO ARG MET SEQRES 4 B 165 PHE ASP ARG GLN SER GLY GLU TRP LYS ASP GLY GLU ALA SEQRES 5 B 165 LEU PHE LEU ARG CYS ASN ILE TRP ARG GLU ALA ALA GLU SEQRES 6 B 165 ASN VAL ALA GLU SER LEU THR ARG GLY SER ARG VAL ILE SEQRES 7 B 165 VAL THR GLY ARG LEU LYS GLN ARG SER PHE GLU THR ARG SEQRES 8 B 165 GLU GLY GLU LYS ARG THR VAL VAL GLU VAL GLU VAL ASP SEQRES 9 B 165 GLU ILE GLY PRO SER LEU ARG TYR ALA THR ALA LYS VAL SEQRES 10 B 165 ASN LYS ALA SER ARG SER GLY GLY GLY GLY GLY GLY PHE SEQRES 11 B 165 GLY SER GLY GLY GLY GLY SER ARG GLN SER GLU PRO LYS SEQRES 12 B 165 ASP ASP PRO TRP GLY SER ALA PRO ALA SER GLY SER PHE SEQRES 13 B 165 SER GLY ALA ASP ASP GLU PRO PRO PHE HET CD A1001 1 HETNAM CD CADMIUM ION FORMUL 3 CD CD 2+ FORMUL 4 HOH *243(H2 O) HELIX 1 1 ARG A 61 LEU A 71 1 11 HELIX 2 2 ARG B 61 LEU B 71 1 11 SHEET 1 A 7 GLU A 18 PHE A 21 0 SHEET 2 A 7 ALA A 27 ALA A 34 -1 O VAL A 28 N ARG A 20 SHEET 3 A 7 PHE A 54 TRP A 60 -1 O CYS A 57 N PHE A 31 SHEET 4 A 7 LYS A 95 PRO A 108 1 O VAL A 103 N ASN A 58 SHEET 5 A 7 ARG A 76 GLU A 89 -1 N LYS A 84 O GLU A 100 SHEET 6 A 7 THR A 6 LEU A 13 -1 N VAL A 9 O VAL A 79 SHEET 7 A 7 ALA A 27 ALA A 34 -1 O ALA A 34 N ASN A 12 SHEET 1 B 2 ALA A 113 LYS A 119 0 SHEET 2 B 2 ALA B 113 LYS B 119 -1 O ASN B 118 N THR A 114 SHEET 1 C 7 GLU B 18 PHE B 21 0 SHEET 2 C 7 ALA B 27 SER B 35 -1 O VAL B 28 N ARG B 20 SHEET 3 C 7 LEU B 53 TRP B 60 -1 O CYS B 57 N PHE B 31 SHEET 4 C 7 THR B 97 PRO B 108 1 O VAL B 103 N ASN B 58 SHEET 5 C 7 ARG B 76 SER B 87 -1 N LYS B 84 O GLU B 100 SHEET 6 C 7 THR B 6 LEU B 13 -1 N GLY B 11 O VAL B 77 SHEET 7 C 7 ALA B 27 SER B 35 -1 O ALA B 34 N ASN B 12 SHEET 1 D 2 ARG B 38 MET B 39 0 SHEET 2 D 2 LYS B 48 ASP B 49 -1 O LYS B 48 N MET B 39 LINK OE1 GLU A 100 CD CD A1001 1555 1555 2.69 LINK OE2 GLU A 100 CD CD A1001 1555 1555 2.58 LINK CD CD A1001 O HOH A1086 1555 1555 2.60 LINK CD CD A1001 OE1 GLU B 62 1555 5665 2.65 LINK CD CD A1001 OE2 GLU B 62 1555 5665 2.38 LINK CD CD A1001 OE1 GLU B 65 1555 5665 2.36 LINK CD CD A1001 OE2 GLU B 65 1555 5665 2.38 SITE 1 AC1 4 GLU A 100 HOH A1086 GLU B 62 GLU B 65 CRYST1 78.620 78.620 79.834 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012719 0.007344 0.000000 0.00000 SCALE2 0.000000 0.014687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012526 0.00000