data_1X5F # _entry.id 1X5F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5F pdb_00001x5f 10.2210/pdb1x5f/pdb RCSB RCSB024401 ? ? WWPDB D_1000024401 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001179.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5F _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Sasagawa, A.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'The solution structure of the first fibronectin type III domain of human Neogenin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Sasagawa, A.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Neogenin _entity.formula_weight 12781.113 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fn3 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ NLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ NLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001179.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 HIS n 1 10 ALA n 1 11 PRO n 1 12 ALA n 1 13 THR n 1 14 THR n 1 15 GLY n 1 16 PRO n 1 17 LEU n 1 18 PRO n 1 19 SER n 1 20 ALA n 1 21 PRO n 1 22 ARG n 1 23 ASP n 1 24 VAL n 1 25 VAL n 1 26 ALA n 1 27 SER n 1 28 LEU n 1 29 VAL n 1 30 SER n 1 31 THR n 1 32 ARG n 1 33 PHE n 1 34 ILE n 1 35 LYS n 1 36 LEU n 1 37 THR n 1 38 TRP n 1 39 ARG n 1 40 THR n 1 41 PRO n 1 42 ALA n 1 43 SER n 1 44 ASP n 1 45 PRO n 1 46 HIS n 1 47 GLY n 1 48 ASP n 1 49 ASN n 1 50 LEU n 1 51 THR n 1 52 TYR n 1 53 SER n 1 54 VAL n 1 55 PHE n 1 56 TYR n 1 57 THR n 1 58 LYS n 1 59 GLU n 1 60 GLY n 1 61 ILE n 1 62 ALA n 1 63 ARG n 1 64 GLU n 1 65 ARG n 1 66 VAL n 1 67 GLU n 1 68 ASN n 1 69 THR n 1 70 SER n 1 71 HIS n 1 72 PRO n 1 73 GLY n 1 74 GLU n 1 75 MET n 1 76 GLN n 1 77 VAL n 1 78 THR n 1 79 ILE n 1 80 GLN n 1 81 ASN n 1 82 LEU n 1 83 MET n 1 84 PRO n 1 85 ALA n 1 86 THR n 1 87 VAL n 1 88 TYR n 1 89 ILE n 1 90 PHE n 1 91 ARG n 1 92 VAL n 1 93 MET n 1 94 ALA n 1 95 GLN n 1 96 ASN n 1 97 LYS n 1 98 HIS n 1 99 GLY n 1 100 SER n 1 101 GLY n 1 102 GLU n 1 103 SER n 1 104 SER n 1 105 ALA n 1 106 PRO n 1 107 LEU n 1 108 ARG n 1 109 VAL n 1 110 GLU n 1 111 THR n 1 112 GLN n 1 113 PRO n 1 114 GLU n 1 115 SER n 1 116 GLY n 1 117 PRO n 1 118 SER n 1 119 SER n 1 120 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NEO1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041213-02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NEO1_HUMAN _struct_ref.pdbx_db_accession Q92859 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATV YIFRVMAQNKHGSGESSAPLRVETQPE ; _struct_ref.pdbx_align_begin 429 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92859 _struct_ref_seq.db_align_beg 429 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 535 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5F GLY A 1 ? UNP Q92859 ? ? 'cloning artifact' 1 1 1 1X5F SER A 2 ? UNP Q92859 ? ? 'cloning artifact' 2 2 1 1X5F SER A 3 ? UNP Q92859 ? ? 'cloning artifact' 3 3 1 1X5F GLY A 4 ? UNP Q92859 ? ? 'cloning artifact' 4 4 1 1X5F SER A 5 ? UNP Q92859 ? ? 'cloning artifact' 5 5 1 1X5F SER A 6 ? UNP Q92859 ? ? 'cloning artifact' 6 6 1 1X5F GLY A 7 ? UNP Q92859 ? ? 'cloning artifact' 7 7 1 1X5F SER A 115 ? UNP Q92859 ? ? 'cloning artifact' 115 8 1 1X5F GLY A 116 ? UNP Q92859 ? ? 'cloning artifact' 116 9 1 1X5F PRO A 117 ? UNP Q92859 ? ? 'cloning artifact' 117 10 1 1X5F SER A 118 ? UNP Q92859 ? ? 'cloning artifact' 118 11 1 1X5F SER A 119 ? UNP Q92859 ? ? 'cloning artifact' 119 12 1 1X5F GLY A 120 ? UNP Q92859 ? ? 'cloning artifact' 120 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.9mM FN3 domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5F _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5F _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5F _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5F _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5F _struct.title 'The solution structure of the first fibronectin type III domain of human Neogenin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5F _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;RGM binding, fibronectin type III domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CELL ADHESION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 22 ? VAL A 29 ? ARG A 22 VAL A 29 A 2 ILE A 34 ? ARG A 39 ? ILE A 34 ARG A 39 A 3 GLN A 76 ? ILE A 79 ? GLN A 76 ILE A 79 B 1 ARG A 65 ? ASN A 68 ? ARG A 65 ASN A 68 B 2 THR A 51 ? LYS A 58 ? THR A 51 LYS A 58 B 3 VAL A 87 ? GLN A 95 ? VAL A 87 GLN A 95 B 4 SER A 100 ? SER A 103 ? SER A 100 SER A 103 C 1 ARG A 65 ? ASN A 68 ? ARG A 65 ASN A 68 C 2 THR A 51 ? LYS A 58 ? THR A 51 LYS A 58 C 3 VAL A 87 ? GLN A 95 ? VAL A 87 GLN A 95 C 4 LEU A 107 ? GLU A 110 ? LEU A 107 GLU A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 25 ? N VAL A 25 O THR A 37 ? O THR A 37 A 2 3 N LEU A 36 ? N LEU A 36 O VAL A 77 ? O VAL A 77 B 1 2 O ARG A 65 ? O ARG A 65 N TYR A 56 ? N TYR A 56 B 2 3 N SER A 53 ? N SER A 53 O MET A 93 ? O MET A 93 B 3 4 N ALA A 94 ? N ALA A 94 O GLY A 101 ? O GLY A 101 C 1 2 O ARG A 65 ? O ARG A 65 N TYR A 56 ? N TYR A 56 C 2 3 N SER A 53 ? N SER A 53 O MET A 93 ? O MET A 93 C 3 4 N PHE A 90 ? N PHE A 90 O LEU A 107 ? O LEU A 107 # _database_PDB_matrix.entry_id 1X5F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5F _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 HIS 98 98 98 HIS HIS A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -49.78 167.79 2 1 ALA A 10 ? ? -38.18 143.72 3 1 PRO A 18 ? ? -69.75 -165.79 4 1 ALA A 20 ? ? -39.53 154.97 5 1 SER A 70 ? ? -39.15 -27.95 6 1 LYS A 97 ? ? -39.31 -29.03 7 1 HIS A 98 ? ? -74.91 -70.29 8 1 SER A 104 ? ? -48.77 171.60 9 1 THR A 111 ? ? -64.08 -179.39 10 1 PRO A 113 ? ? -69.76 99.00 11 1 GLU A 114 ? ? -39.78 160.59 12 1 SER A 118 ? ? -47.92 104.59 13 2 PRO A 18 ? ? -69.71 -178.28 14 2 THR A 57 ? ? -172.42 136.66 15 2 GLU A 74 ? ? -37.66 118.52 16 2 SER A 104 ? ? -49.40 175.20 17 2 SER A 115 ? ? -109.13 -61.11 18 3 ALA A 12 ? ? 34.17 54.09 19 3 PRO A 18 ? ? -69.74 -168.40 20 3 ALA A 20 ? ? -40.56 154.27 21 3 GLU A 59 ? ? -39.08 -26.16 22 3 SER A 104 ? ? -49.61 172.34 23 3 THR A 111 ? ? -60.95 -177.30 24 3 PRO A 113 ? ? -69.79 99.99 25 4 ALA A 10 ? ? -171.96 139.92 26 4 PRO A 11 ? ? -69.81 97.50 27 4 PRO A 18 ? ? -69.76 -164.33 28 4 SER A 70 ? ? -35.24 -35.27 29 4 SER A 104 ? ? -48.60 177.14 30 5 GLU A 8 ? ? 32.17 38.66 31 5 HIS A 9 ? ? -37.18 152.75 32 5 PRO A 18 ? ? -69.78 -166.42 33 5 ALA A 20 ? ? -42.10 154.06 34 5 SER A 70 ? ? -36.97 -30.64 35 5 LYS A 97 ? ? -34.51 -38.32 36 5 HIS A 98 ? ? -68.96 -70.94 37 5 SER A 104 ? ? -48.43 177.61 38 5 THR A 111 ? ? -65.06 -178.31 39 5 PRO A 117 ? ? -69.79 94.62 40 5 SER A 118 ? ? -126.73 -67.95 41 5 SER A 119 ? ? -173.32 122.26 42 6 PRO A 11 ? ? -69.67 -178.98 43 6 PRO A 18 ? ? -69.77 -164.42 44 6 ALA A 20 ? ? -42.18 155.80 45 6 SER A 70 ? ? -38.87 -28.07 46 6 HIS A 98 ? ? -77.15 -70.64 47 6 SER A 104 ? ? -55.38 173.26 48 7 PRO A 11 ? ? -69.78 93.08 49 7 PRO A 18 ? ? -69.71 -174.48 50 7 GLU A 59 ? ? -52.86 108.05 51 7 SER A 70 ? ? -35.23 -33.27 52 7 GLU A 74 ? ? -37.93 120.65 53 7 SER A 104 ? ? -51.37 171.05 54 7 THR A 111 ? ? -60.91 -179.71 55 7 GLU A 114 ? ? -91.06 49.89 56 8 SER A 3 ? ? -174.25 127.01 57 8 GLU A 8 ? ? -161.35 118.21 58 8 ALA A 20 ? ? -46.67 152.63 59 8 SER A 70 ? ? -36.34 -33.44 60 8 GLU A 74 ? ? -39.49 122.83 61 8 ASN A 81 ? ? 71.57 46.01 62 8 SER A 104 ? ? -56.33 171.95 63 8 GLU A 114 ? ? -52.29 -175.27 64 8 SER A 118 ? ? -173.28 136.75 65 9 SER A 5 ? ? -97.34 43.30 66 9 THR A 13 ? ? -94.67 47.25 67 9 PRO A 18 ? ? -69.73 -166.66 68 9 GLU A 59 ? ? -37.22 -29.16 69 9 SER A 70 ? ? -34.47 -39.71 70 9 ASN A 81 ? ? 72.36 43.76 71 9 LYS A 97 ? ? -36.47 -32.05 72 9 SER A 104 ? ? -57.01 173.31 73 9 THR A 111 ? ? -69.14 -177.77 74 9 PRO A 113 ? ? -69.74 99.96 75 9 PRO A 117 ? ? -69.80 1.99 76 9 SER A 118 ? ? -35.79 107.51 77 10 SER A 3 ? ? -132.09 -47.64 78 10 PRO A 18 ? ? -69.76 -165.74 79 10 THR A 57 ? ? -170.29 142.79 80 10 GLU A 74 ? ? -37.69 118.71 81 10 ASN A 81 ? ? 70.10 47.57 82 10 SER A 104 ? ? -56.12 176.75 83 11 SER A 3 ? ? 70.14 42.10 84 11 SER A 6 ? ? -124.82 -55.97 85 11 GLU A 8 ? ? -131.93 -51.13 86 11 PRO A 18 ? ? -69.73 -177.59 87 11 ALA A 20 ? ? -34.85 152.13 88 11 GLN A 76 ? ? -170.35 147.64 89 11 HIS A 98 ? ? -79.86 -70.55 90 11 SER A 104 ? ? -54.44 177.04 91 11 PRO A 113 ? ? -69.80 99.91 92 11 GLU A 114 ? ? -86.07 39.02 93 12 ALA A 12 ? ? 72.84 38.86 94 12 ALA A 20 ? ? -34.14 150.63 95 12 GLU A 59 ? ? -39.95 -32.00 96 12 SER A 70 ? ? -37.76 -31.71 97 12 GLU A 74 ? ? -35.07 130.64 98 12 LYS A 97 ? ? -34.25 -35.02 99 12 HIS A 98 ? ? -67.95 -71.43 100 12 SER A 104 ? ? -47.09 174.05 101 12 THR A 111 ? ? -62.93 -178.82 102 12 GLU A 114 ? ? -98.93 32.68 103 13 PRO A 18 ? ? -69.77 -169.63 104 13 ALA A 20 ? ? -37.57 152.55 105 13 THR A 57 ? ? -172.46 148.99 106 13 ALA A 62 ? ? -95.87 30.84 107 13 SER A 70 ? ? -35.33 -32.21 108 13 GLU A 74 ? ? -35.69 123.47 109 13 HIS A 98 ? ? -77.70 -71.54 110 13 SER A 104 ? ? -48.83 173.59 111 13 THR A 111 ? ? -68.50 -177.02 112 13 GLU A 114 ? ? -96.89 42.60 113 14 GLU A 8 ? ? -116.96 77.17 114 14 PRO A 18 ? ? -69.78 -169.90 115 14 ALA A 20 ? ? -48.76 152.98 116 14 GLU A 59 ? ? -35.91 -37.93 117 14 SER A 70 ? ? -35.07 -33.69 118 14 GLN A 76 ? ? -174.62 142.76 119 14 ASN A 81 ? ? 72.48 47.11 120 14 HIS A 98 ? ? -76.13 -72.66 121 14 SER A 104 ? ? -54.19 175.48 122 14 THR A 111 ? ? -67.47 -179.45 123 14 PRO A 113 ? ? -69.73 91.01 124 15 SER A 2 ? ? -48.70 158.78 125 15 SER A 6 ? ? 38.50 45.29 126 15 PRO A 11 ? ? -69.79 2.30 127 15 ALA A 12 ? ? -56.98 97.90 128 15 PRO A 16 ? ? -69.79 -176.06 129 15 PRO A 18 ? ? -69.69 -172.83 130 15 GLU A 59 ? ? -38.96 132.09 131 15 ILE A 61 ? ? -49.39 99.75 132 15 SER A 70 ? ? -34.47 -37.87 133 15 GLU A 74 ? ? -34.44 124.97 134 15 HIS A 98 ? ? -77.95 -71.25 135 15 THR A 111 ? ? -67.93 -178.91 136 15 SER A 118 ? ? 37.87 40.28 137 16 PRO A 11 ? ? -69.75 -176.13 138 16 PRO A 18 ? ? -69.71 -175.04 139 16 ALA A 20 ? ? -39.15 157.64 140 16 SER A 70 ? ? -35.04 -37.56 141 16 GLU A 74 ? ? -37.23 128.75 142 16 LYS A 97 ? ? -38.00 -27.94 143 16 HIS A 98 ? ? -74.52 -71.40 144 16 SER A 104 ? ? -48.49 175.75 145 16 THR A 111 ? ? -67.81 -179.37 146 16 SER A 115 ? ? -34.73 139.35 147 17 PRO A 11 ? ? -69.77 2.08 148 17 PRO A 18 ? ? -69.73 -167.88 149 17 ALA A 20 ? ? -49.23 151.06 150 17 SER A 70 ? ? -35.79 -31.80 151 17 ASN A 81 ? ? 71.52 48.18 152 17 LYS A 97 ? ? -46.91 -19.93 153 17 SER A 104 ? ? -56.08 175.62 154 18 SER A 2 ? ? -162.67 116.68 155 18 PRO A 18 ? ? -69.66 -175.81 156 18 GLU A 59 ? ? -38.50 -35.45 157 18 SER A 70 ? ? -33.96 -37.95 158 18 ASN A 81 ? ? 72.64 40.90 159 18 GLU A 114 ? ? -48.25 177.69 160 18 SER A 115 ? ? -104.09 78.31 161 19 GLU A 8 ? ? -65.36 93.97 162 19 ALA A 12 ? ? -169.31 106.54 163 19 PRO A 18 ? ? -69.71 -167.30 164 19 SER A 70 ? ? -36.36 -31.01 165 19 LYS A 97 ? ? -38.19 -27.11 166 19 HIS A 98 ? ? -73.46 -72.41 167 19 SER A 104 ? ? -57.87 172.07 168 19 PRO A 113 ? ? -69.79 94.27 169 19 SER A 115 ? ? 35.55 49.26 170 20 PRO A 18 ? ? -69.71 -172.72 171 20 ALA A 20 ? ? -41.89 156.92 172 20 SER A 70 ? ? -34.24 -39.65 173 20 GLU A 74 ? ? -34.33 120.34 174 20 LYS A 97 ? ? -35.49 -33.78 175 20 HIS A 98 ? ? -69.78 -71.90 176 20 SER A 104 ? ? -51.88 175.77 177 20 THR A 111 ? ? -67.37 -178.42 178 20 GLU A 114 ? ? -91.16 49.00 179 20 PRO A 117 ? ? -69.80 89.26 #