data_1X5G # _entry.id 1X5G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5G pdb_00001x5g 10.2210/pdb1x5g/pdb RCSB RCSB024402 ? ? WWPDB D_1000024402 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001179.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5G _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'The solution structure of the second fibronectin type III domain of human Neogenin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Neogenin _entity.formula_weight 12415.506 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fn3 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKK YTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKK YTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001179.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 VAL n 1 10 GLU n 1 11 THR n 1 12 GLN n 1 13 PRO n 1 14 GLU n 1 15 VAL n 1 16 GLN n 1 17 LEU n 1 18 PRO n 1 19 GLY n 1 20 PRO n 1 21 ALA n 1 22 PRO n 1 23 ASN n 1 24 LEU n 1 25 ARG n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 ALA n 1 30 SER n 1 31 PRO n 1 32 THR n 1 33 SER n 1 34 ILE n 1 35 THR n 1 36 VAL n 1 37 THR n 1 38 TRP n 1 39 GLU n 1 40 THR n 1 41 PRO n 1 42 VAL n 1 43 SER n 1 44 GLY n 1 45 ASN n 1 46 GLY n 1 47 GLU n 1 48 ILE n 1 49 GLN n 1 50 ASN n 1 51 TYR n 1 52 LYS n 1 53 LEU n 1 54 TYR n 1 55 TYR n 1 56 MET n 1 57 GLU n 1 58 LYS n 1 59 GLY n 1 60 THR n 1 61 ASP n 1 62 LYS n 1 63 GLU n 1 64 GLN n 1 65 ASP n 1 66 VAL n 1 67 ASP n 1 68 VAL n 1 69 SER n 1 70 SER n 1 71 HIS n 1 72 SER n 1 73 TYR n 1 74 THR n 1 75 ILE n 1 76 ASN n 1 77 GLY n 1 78 LEU n 1 79 LYS n 1 80 LYS n 1 81 TYR n 1 82 THR n 1 83 GLU n 1 84 TYR n 1 85 SER n 1 86 PHE n 1 87 ARG n 1 88 VAL n 1 89 VAL n 1 90 ALA n 1 91 TYR n 1 92 ASN n 1 93 LYS n 1 94 HIS n 1 95 GLY n 1 96 PRO n 1 97 GLY n 1 98 VAL n 1 99 SER n 1 100 THR n 1 101 PRO n 1 102 ASP n 1 103 VAL n 1 104 ALA n 1 105 VAL n 1 106 ARG n 1 107 THR n 1 108 LEU n 1 109 SER n 1 110 ASP n 1 111 SER n 1 112 GLY n 1 113 PRO n 1 114 SER n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NEO1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041213-03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NEO1_HUMAN _struct_ref.pdbx_db_accession Q92859 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFR VVAYNKHGPGVSTPDVAVRTLSD ; _struct_ref.pdbx_align_begin 529 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92859 _struct_ref_seq.db_align_beg 529 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 631 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5G GLY A 1 ? UNP Q92859 ? ? 'cloning artifact' 1 1 1 1X5G SER A 2 ? UNP Q92859 ? ? 'cloning artifact' 2 2 1 1X5G SER A 3 ? UNP Q92859 ? ? 'cloning artifact' 3 3 1 1X5G GLY A 4 ? UNP Q92859 ? ? 'cloning artifact' 4 4 1 1X5G SER A 5 ? UNP Q92859 ? ? 'cloning artifact' 5 5 1 1X5G SER A 6 ? UNP Q92859 ? ? 'cloning artifact' 6 6 1 1X5G GLY A 7 ? UNP Q92859 ? ? 'cloning artifact' 7 7 1 1X5G SER A 111 ? UNP Q92859 ? ? 'cloning artifact' 111 8 1 1X5G GLY A 112 ? UNP Q92859 ? ? 'cloning artifact' 112 9 1 1X5G PRO A 113 ? UNP Q92859 ? ? 'cloning artifact' 113 10 1 1X5G SER A 114 ? UNP Q92859 ? ? 'cloning artifact' 114 11 1 1X5G SER A 115 ? UNP Q92859 ? ? 'cloning artifact' 115 12 1 1X5G GLY A 116 ? UNP Q92859 ? ? 'cloning artifact' 116 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.9mM FN3 domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5G _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5G _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5G _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5G _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5G _struct.title 'The solution structure of the second fibronectin type III domain of human Neogenin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5G _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;RGM binding, fibronectin type III domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CELL ADHESION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 25 ? SER A 30 ? ARG A 25 SER A 30 A 2 SER A 33 ? THR A 37 ? SER A 33 THR A 37 A 3 SER A 72 ? ILE A 75 ? SER A 72 ILE A 75 B 1 VAL A 66 ? VAL A 68 ? VAL A 66 VAL A 68 B 2 ASN A 50 ? GLU A 57 ? ASN A 50 GLU A 57 B 3 GLU A 83 ? TYR A 91 ? GLU A 83 TYR A 91 B 4 VAL A 105 ? ARG A 106 ? VAL A 105 ARG A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 25 ? N ARG A 25 O THR A 37 ? O THR A 37 A 2 3 N ILE A 34 ? N ILE A 34 O ILE A 75 ? O ILE A 75 B 1 2 O VAL A 68 ? O VAL A 68 N TYR A 51 ? N TYR A 51 B 2 3 N MET A 56 ? N MET A 56 O SER A 85 ? O SER A 85 B 3 4 N TYR A 84 ? N TYR A 84 O VAL A 105 ? O VAL A 105 # _database_PDB_matrix.entry_id 1X5G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5G _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -35.14 109.65 2 1 GLU A 10 ? ? -84.06 37.83 3 1 PRO A 13 ? ? -69.78 -163.94 4 1 GLU A 14 ? ? -52.28 -176.88 5 1 PRO A 22 ? ? -69.72 -177.37 6 1 LYS A 58 ? ? -55.46 100.05 7 1 VAL A 98 ? ? -41.04 160.51 8 1 PRO A 113 ? ? -69.80 2.84 9 1 SER A 114 ? ? -34.62 107.71 10 2 GLN A 12 ? ? -174.26 146.08 11 2 GLN A 16 ? ? -81.02 46.47 12 2 PRO A 22 ? ? -69.75 -178.32 13 2 PRO A 31 ? ? -69.76 0.53 14 2 LYS A 58 ? ? -57.25 98.14 15 2 LYS A 93 ? ? -39.58 -39.92 16 2 PRO A 96 ? ? -69.75 97.70 17 2 VAL A 98 ? ? -47.11 175.09 18 2 ASP A 102 ? ? -38.80 133.46 19 3 SER A 2 ? ? -132.30 -43.67 20 3 PRO A 13 ? ? -69.81 -166.31 21 3 GLN A 16 ? ? 74.33 42.28 22 3 PRO A 18 ? ? -69.69 -172.61 23 3 PRO A 22 ? ? -69.77 -175.16 24 3 ASN A 23 ? ? 39.40 49.98 25 3 LYS A 58 ? ? -33.68 101.80 26 3 LYS A 93 ? ? -35.33 -34.33 27 3 VAL A 98 ? ? -69.68 -177.34 28 3 ASP A 102 ? ? -39.08 130.57 29 4 PRO A 18 ? ? -69.76 -176.27 30 4 PRO A 22 ? ? -69.78 -178.39 31 4 LYS A 58 ? ? -55.65 99.09 32 4 ASP A 102 ? ? -38.94 132.37 33 4 VAL A 103 ? ? -118.01 79.75 34 4 SER A 115 ? ? -40.69 152.45 35 5 PRO A 13 ? ? -69.77 -174.94 36 5 GLN A 16 ? ? -93.00 33.88 37 5 ALA A 21 ? ? -50.77 107.04 38 5 PRO A 22 ? ? -69.74 -176.02 39 5 ASN A 23 ? ? 39.35 44.50 40 5 ILE A 48 ? ? -53.88 105.76 41 5 LYS A 58 ? ? -53.44 100.46 42 5 SER A 69 ? ? -105.47 53.49 43 5 SER A 111 ? ? -120.56 -54.52 44 6 PRO A 13 ? ? -69.77 -178.45 45 6 PRO A 22 ? ? -69.81 -177.17 46 6 ASN A 23 ? ? 35.31 52.54 47 6 PRO A 31 ? ? -69.72 1.51 48 6 LYS A 58 ? ? -53.72 91.83 49 6 VAL A 98 ? ? -55.57 -175.52 50 6 THR A 100 ? ? -40.88 154.66 51 6 ASP A 102 ? ? -34.63 138.10 52 6 SER A 111 ? ? -91.73 42.83 53 7 SER A 5 ? ? -46.70 102.04 54 7 GLN A 16 ? ? -81.90 40.12 55 7 PRO A 31 ? ? -69.76 1.93 56 7 LYS A 58 ? ? -55.97 99.81 57 7 THR A 100 ? ? -43.12 155.43 58 7 VAL A 103 ? ? -119.52 74.68 59 7 SER A 111 ? ? -43.50 153.63 60 8 SER A 3 ? ? -40.41 152.32 61 8 GLN A 12 ? ? -172.82 148.44 62 8 PRO A 13 ? ? -69.76 -175.19 63 8 PRO A 22 ? ? -69.77 -179.46 64 8 PRO A 31 ? ? -69.75 1.03 65 8 LYS A 93 ? ? -38.57 -37.21 66 8 VAL A 98 ? ? -57.99 -175.25 67 8 ASP A 102 ? ? -34.94 134.04 68 8 PRO A 113 ? ? -69.72 -179.75 69 9 PRO A 13 ? ? -69.78 -168.14 70 9 GLN A 16 ? ? -79.60 48.95 71 9 PRO A 22 ? ? -69.78 -175.32 72 9 ASN A 23 ? ? 34.27 46.94 73 9 PRO A 31 ? ? -69.78 1.84 74 9 LYS A 58 ? ? -29.56 101.23 75 9 HIS A 71 ? ? -89.77 31.12 76 9 SER A 72 ? ? -171.84 126.61 77 9 ASP A 102 ? ? -37.26 129.98 78 9 VAL A 103 ? ? -118.42 73.63 79 9 ASP A 110 ? ? -69.74 86.71 80 9 SER A 111 ? ? -109.34 70.07 81 9 PRO A 113 ? ? -69.75 2.65 82 9 SER A 114 ? ? 71.48 44.60 83 10 ARG A 8 ? ? -62.46 85.13 84 10 PRO A 22 ? ? -69.78 -174.20 85 10 ASN A 23 ? ? 34.40 51.75 86 10 PRO A 31 ? ? -69.76 1.67 87 10 LYS A 58 ? ? -55.60 97.80 88 10 THR A 60 ? ? -133.16 -34.28 89 10 SER A 69 ? ? -116.24 51.36 90 10 LYS A 93 ? ? -39.41 -28.62 91 10 VAL A 98 ? ? -50.71 175.20 92 11 GLU A 14 ? ? -46.66 150.75 93 11 PRO A 31 ? ? -69.67 3.22 94 11 LYS A 58 ? ? -58.96 95.36 95 11 SER A 69 ? ? -102.78 51.16 96 11 VAL A 98 ? ? -50.95 178.20 97 11 ASP A 102 ? ? -36.26 136.75 98 11 PRO A 113 ? ? -69.72 93.64 99 12 VAL A 9 ? ? -56.05 173.87 100 12 PRO A 13 ? ? -69.84 -170.26 101 12 PRO A 22 ? ? -69.79 -178.14 102 12 PRO A 31 ? ? -69.74 0.26 103 12 LYS A 58 ? ? -56.49 94.67 104 12 HIS A 94 ? ? -64.86 -70.18 105 12 VAL A 98 ? ? -58.70 173.22 106 12 PRO A 113 ? ? -69.75 3.02 107 12 SER A 114 ? ? -33.83 111.47 108 13 SER A 2 ? ? -56.15 108.58 109 13 SER A 5 ? ? -34.50 108.68 110 13 GLN A 16 ? ? -49.19 104.29 111 13 ALA A 21 ? ? -47.63 108.23 112 13 PRO A 22 ? ? -69.82 -179.07 113 13 PRO A 31 ? ? -69.77 5.10 114 13 VAL A 98 ? ? -48.48 178.16 115 13 ASP A 102 ? ? -38.06 146.01 116 14 SER A 2 ? ? 34.44 42.48 117 14 VAL A 9 ? ? -34.67 137.31 118 14 PRO A 22 ? ? -69.75 -176.74 119 14 ASN A 23 ? ? 37.40 45.11 120 14 VAL A 42 ? ? -39.96 -34.45 121 14 LYS A 58 ? ? -57.68 94.88 122 14 LYS A 93 ? ? -39.92 -36.65 123 14 THR A 100 ? ? -44.58 158.03 124 14 ASP A 102 ? ? -38.82 132.96 125 14 ASP A 110 ? ? -80.83 42.89 126 14 SER A 115 ? ? 36.85 42.31 127 15 SER A 6 ? ? -84.75 46.85 128 15 ARG A 8 ? ? -174.57 114.75 129 15 GLU A 10 ? ? -106.25 68.00 130 15 PRO A 13 ? ? -69.73 -176.47 131 15 PRO A 22 ? ? -69.74 -179.33 132 15 PRO A 31 ? ? -69.75 1.80 133 15 LYS A 58 ? ? -33.86 104.90 134 15 PRO A 96 ? ? -69.79 87.52 135 15 VAL A 98 ? ? -42.98 166.53 136 15 ASP A 110 ? ? -85.21 45.19 137 16 ARG A 8 ? ? -69.84 87.06 138 16 GLU A 10 ? ? -62.36 86.84 139 16 GLN A 16 ? ? -84.62 39.73 140 16 ALA A 21 ? ? -57.63 109.97 141 16 PRO A 22 ? ? -69.76 -178.40 142 16 PRO A 31 ? ? -69.79 3.95 143 16 LYS A 58 ? ? -59.88 101.96 144 16 HIS A 94 ? ? -61.85 -70.33 145 16 VAL A 98 ? ? -43.17 167.54 146 16 ASP A 102 ? ? -38.55 133.99 147 16 VAL A 103 ? ? -118.74 77.87 148 16 ASP A 110 ? ? -83.65 45.93 149 17 SER A 5 ? ? -172.68 143.32 150 17 ARG A 8 ? ? -36.45 153.17 151 17 PRO A 13 ? ? -69.75 -176.97 152 17 PRO A 18 ? ? -69.78 -179.54 153 17 PRO A 22 ? ? -69.77 -174.11 154 17 ASN A 23 ? ? 33.99 51.60 155 17 LYS A 58 ? ? -60.38 99.31 156 17 THR A 60 ? ? -131.73 -32.31 157 17 VAL A 98 ? ? -46.37 168.87 158 17 SER A 114 ? ? 34.42 42.63 159 18 SER A 3 ? ? -132.07 -50.19 160 18 VAL A 9 ? ? -106.04 40.11 161 18 PRO A 13 ? ? -69.77 -174.93 162 18 ALA A 21 ? ? -34.86 115.32 163 18 ASN A 45 ? ? -128.43 -54.88 164 18 LYS A 58 ? ? -56.17 96.92 165 18 LYS A 93 ? ? -39.60 -32.88 166 18 PRO A 96 ? ? -69.78 86.79 167 18 VAL A 98 ? ? -41.86 163.76 168 18 ASP A 102 ? ? -33.74 133.13 169 18 SER A 115 ? ? 36.16 42.09 170 19 SER A 6 ? ? -162.52 105.55 171 19 THR A 11 ? ? 34.02 34.39 172 19 GLN A 12 ? ? -38.66 107.47 173 19 GLU A 14 ? ? -51.66 172.37 174 19 PRO A 22 ? ? -69.67 -178.51 175 19 PRO A 31 ? ? -69.73 3.37 176 19 LYS A 58 ? ? -59.24 103.15 177 19 VAL A 98 ? ? -41.98 165.15 178 19 PRO A 113 ? ? -69.71 1.89 179 19 SER A 114 ? ? -42.43 160.57 180 20 SER A 2 ? ? -163.83 109.63 181 20 PRO A 13 ? ? -69.84 4.36 182 20 VAL A 15 ? ? -117.11 50.88 183 20 GLN A 16 ? ? -98.97 43.16 184 20 PRO A 22 ? ? -69.81 -176.16 185 20 ASN A 23 ? ? 39.33 50.27 186 20 LYS A 58 ? ? -54.94 98.98 187 20 VAL A 98 ? ? -60.54 -179.80 188 20 THR A 100 ? ? -47.67 160.37 189 20 PRO A 113 ? ? -69.79 92.73 #