data_1X5K # _entry.id 1X5K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5K pdb_00001x5k 10.2210/pdb1x5k/pdb RCSB RCSB024406 ? ? WWPDB D_1000024406 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001179.6 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5K _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'The solution structure of the sixth fibronectin type III domain of human Neogenin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Neogenin _entity.formula_weight 13391.949 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fn3 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLT HQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLT HQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001179.6 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 ALA n 1 10 HIS n 1 11 GLY n 1 12 THR n 1 13 THR n 1 14 PHE n 1 15 GLU n 1 16 LEU n 1 17 VAL n 1 18 PRO n 1 19 THR n 1 20 SER n 1 21 PRO n 1 22 PRO n 1 23 LYS n 1 24 ASP n 1 25 VAL n 1 26 THR n 1 27 VAL n 1 28 VAL n 1 29 SER n 1 30 LYS n 1 31 GLU n 1 32 GLY n 1 33 LYS n 1 34 PRO n 1 35 LYS n 1 36 THR n 1 37 ILE n 1 38 ILE n 1 39 VAL n 1 40 ASN n 1 41 TRP n 1 42 GLN n 1 43 PRO n 1 44 PRO n 1 45 SER n 1 46 GLU n 1 47 ALA n 1 48 ASN n 1 49 GLY n 1 50 LYS n 1 51 ILE n 1 52 THR n 1 53 GLY n 1 54 TYR n 1 55 ILE n 1 56 ILE n 1 57 TYR n 1 58 TYR n 1 59 SER n 1 60 THR n 1 61 ASP n 1 62 VAL n 1 63 ASN n 1 64 ALA n 1 65 GLU n 1 66 ILE n 1 67 HIS n 1 68 ASP n 1 69 TRP n 1 70 VAL n 1 71 ILE n 1 72 GLU n 1 73 PRO n 1 74 VAL n 1 75 VAL n 1 76 GLY n 1 77 ASN n 1 78 ARG n 1 79 LEU n 1 80 THR n 1 81 HIS n 1 82 GLN n 1 83 ILE n 1 84 GLN n 1 85 GLU n 1 86 LEU n 1 87 THR n 1 88 LEU n 1 89 ASP n 1 90 THR n 1 91 PRO n 1 92 TYR n 1 93 TYR n 1 94 PHE n 1 95 LYS n 1 96 ILE n 1 97 GLN n 1 98 ALA n 1 99 ARG n 1 100 ASN n 1 101 SER n 1 102 LYS n 1 103 GLY n 1 104 MET n 1 105 GLY n 1 106 PRO n 1 107 MET n 1 108 SER n 1 109 GLU n 1 110 ALA n 1 111 VAL n 1 112 GLN n 1 113 PHE n 1 114 ARG n 1 115 THR n 1 116 PRO n 1 117 LYS n 1 118 ALA n 1 119 SER n 1 120 GLY n 1 121 PRO n 1 122 SER n 1 123 SER n 1 124 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NEO1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041213-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NEO1_HUMAN _struct_ref.pdbx_db_accession Q92859 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELT LDTPYYFKIQARNSKGMGPMSEAVQFRTPKA ; _struct_ref.pdbx_align_begin 944 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92859 _struct_ref_seq.db_align_beg 944 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1054 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5K GLY A 1 ? UNP Q92859 ? ? 'cloning artifact' 1 1 1 1X5K SER A 2 ? UNP Q92859 ? ? 'cloning artifact' 2 2 1 1X5K SER A 3 ? UNP Q92859 ? ? 'cloning artifact' 3 3 1 1X5K GLY A 4 ? UNP Q92859 ? ? 'cloning artifact' 4 4 1 1X5K SER A 5 ? UNP Q92859 ? ? 'cloning artifact' 5 5 1 1X5K SER A 6 ? UNP Q92859 ? ? 'cloning artifact' 6 6 1 1X5K GLY A 7 ? UNP Q92859 ? ? 'cloning artifact' 7 7 1 1X5K SER A 119 ? UNP Q92859 ? ? 'cloning artifact' 119 8 1 1X5K GLY A 120 ? UNP Q92859 ? ? 'cloning artifact' 120 9 1 1X5K PRO A 121 ? UNP Q92859 ? ? 'cloning artifact' 121 10 1 1X5K SER A 122 ? UNP Q92859 ? ? 'cloning artifact' 122 11 1 1X5K SER A 123 ? UNP Q92859 ? ? 'cloning artifact' 123 12 1 1X5K GLY A 124 ? UNP Q92859 ? ? 'cloning artifact' 124 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.3mM FN3 domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5K _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5K _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5K _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5K _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5K _struct.title 'The solution structure of the sixth fibronectin type III domain of human Neogenin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5K _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;RGM binding, fibronectin type III domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CELL ADHESION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 23 ? SER A 29 ? LYS A 23 SER A 29 A 2 ILE A 37 ? GLN A 42 ? ILE A 37 GLN A 42 A 3 THR A 80 ? ILE A 83 ? THR A 80 ILE A 83 B 1 VAL A 70 ? VAL A 74 ? VAL A 70 VAL A 74 B 2 GLY A 53 ? SER A 59 ? GLY A 53 SER A 59 B 3 PRO A 91 ? ARG A 99 ? PRO A 91 ARG A 99 B 4 VAL A 111 ? ARG A 114 ? VAL A 111 ARG A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 23 ? N LYS A 23 O GLN A 42 ? O GLN A 42 A 2 3 N VAL A 39 ? N VAL A 39 O HIS A 81 ? O HIS A 81 B 1 2 O VAL A 74 ? O VAL A 74 N TYR A 54 ? N TYR A 54 B 2 3 N TYR A 57 ? N TYR A 57 O LYS A 95 ? O LYS A 95 B 3 4 N PHE A 94 ? N PHE A 94 O VAL A 111 ? O VAL A 111 # _database_PDB_matrix.entry_id 1X5K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5K _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLY 124 124 124 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 9 ? ? -83.59 46.12 2 1 VAL A 17 ? ? -47.29 153.46 3 1 PRO A 18 ? ? -69.70 93.56 4 1 THR A 19 ? ? -83.80 30.69 5 1 ALA A 47 ? ? 34.66 52.98 6 1 ASN A 48 ? ? -34.43 -34.30 7 1 THR A 52 ? ? -130.65 -30.41 8 1 ILE A 66 ? ? -34.92 -31.98 9 1 ASN A 77 ? ? 39.03 43.20 10 1 ASP A 89 ? ? 39.21 47.44 11 1 LYS A 102 ? ? -68.06 -73.18 12 1 PRO A 116 ? ? -69.74 -163.80 13 1 SER A 123 ? ? -173.32 131.87 14 2 ALA A 9 ? ? -93.67 47.92 15 2 THR A 12 ? ? -35.72 134.66 16 2 PHE A 14 ? ? -174.85 108.75 17 2 PRO A 18 ? ? -69.71 94.82 18 2 GLU A 46 ? ? -97.30 58.71 19 2 ASN A 48 ? ? -34.24 -36.10 20 2 SER A 59 ? ? -171.94 146.80 21 2 ASN A 77 ? ? 34.70 54.70 22 2 ALA A 110 ? ? -35.07 144.43 23 2 PRO A 116 ? ? -69.80 -163.72 24 2 PRO A 121 ? ? -69.74 96.18 25 3 SER A 2 ? ? -167.55 107.67 26 3 GLU A 15 ? ? -55.31 -177.45 27 3 ASP A 24 ? ? 39.80 54.01 28 3 ASN A 48 ? ? -34.67 -32.62 29 3 LYS A 102 ? ? -65.29 -75.23 30 3 PRO A 116 ? ? -69.81 -163.83 31 4 HIS A 10 ? ? -38.04 130.73 32 4 THR A 12 ? ? -66.48 95.10 33 4 VAL A 17 ? ? -45.86 154.01 34 4 LYS A 30 ? ? -47.53 152.23 35 4 ALA A 47 ? ? 37.71 51.11 36 4 THR A 60 ? ? -87.92 32.30 37 4 ILE A 66 ? ? -39.16 -26.09 38 4 ASP A 89 ? ? 36.27 45.32 39 4 LYS A 102 ? ? -85.23 -75.35 40 4 ALA A 110 ? ? -37.92 120.10 41 4 PRO A 116 ? ? -69.74 -163.83 42 5 PRO A 18 ? ? -69.73 96.89 43 5 PRO A 22 ? ? -69.78 -166.82 44 5 ALA A 47 ? ? 35.87 52.26 45 5 ASN A 48 ? ? -35.65 -31.22 46 5 ASN A 77 ? ? -83.71 41.59 47 5 ASP A 89 ? ? 39.75 40.52 48 5 LYS A 102 ? ? -73.43 -71.98 49 5 ALA A 110 ? ? -57.35 108.97 50 5 PRO A 116 ? ? -69.78 -163.82 51 5 SER A 123 ? ? -165.62 108.95 52 6 SER A 5 ? ? -161.61 112.95 53 6 VAL A 17 ? ? -47.23 152.03 54 6 ALA A 47 ? ? 35.85 51.81 55 6 ASP A 89 ? ? 37.54 38.64 56 6 LYS A 102 ? ? -62.90 -70.38 57 6 PRO A 116 ? ? -69.78 -163.87 58 7 THR A 12 ? ? -89.34 42.68 59 7 THR A 13 ? ? -122.16 -56.34 60 7 ALA A 47 ? ? 34.21 52.31 61 7 ASN A 48 ? ? -75.82 48.92 62 7 ASN A 77 ? ? 37.19 54.60 63 7 LYS A 102 ? ? -79.96 -71.93 64 7 PRO A 106 ? ? -69.69 -164.15 65 7 PRO A 116 ? ? -69.71 -163.80 66 7 ALA A 118 ? ? -78.85 44.83 67 7 SER A 119 ? ? -39.10 135.85 68 8 THR A 8 ? ? 37.26 35.93 69 8 HIS A 10 ? ? -83.39 43.72 70 8 ASN A 48 ? ? 40.21 25.27 71 8 THR A 60 ? ? -84.60 32.06 72 8 ILE A 66 ? ? -37.21 -34.55 73 8 ASN A 77 ? ? -86.41 42.38 74 8 LYS A 102 ? ? -60.26 -71.86 75 8 PRO A 116 ? ? -69.76 -163.66 76 8 ALA A 118 ? ? -82.16 39.26 77 9 THR A 12 ? ? -124.36 -56.82 78 9 GLU A 15 ? ? -52.43 -178.73 79 9 PRO A 18 ? ? -69.81 94.95 80 9 ASN A 48 ? ? -38.03 -28.35 81 9 THR A 60 ? ? -87.65 45.86 82 9 ASP A 61 ? ? -172.61 128.38 83 9 ASN A 77 ? ? -91.54 43.81 84 9 ASP A 89 ? ? 35.82 54.97 85 9 LYS A 102 ? ? -79.20 -72.52 86 9 PRO A 116 ? ? -69.77 -163.95 87 9 SER A 123 ? ? -131.54 -49.82 88 10 PRO A 18 ? ? -69.76 96.50 89 10 PRO A 22 ? ? -69.77 -172.20 90 10 ASN A 48 ? ? -35.31 -33.11 91 10 THR A 60 ? ? -96.57 36.65 92 10 ASN A 77 ? ? 39.66 36.22 93 10 PRO A 116 ? ? -69.82 -163.62 94 10 ALA A 118 ? ? -90.77 40.85 95 11 VAL A 17 ? ? -41.24 154.20 96 11 ALA A 47 ? ? -106.35 68.03 97 11 ASN A 48 ? ? -35.20 -31.92 98 11 ILE A 66 ? ? -36.12 -32.06 99 11 VAL A 75 ? ? -55.47 170.34 100 11 ARG A 78 ? ? -37.17 150.11 101 11 LYS A 102 ? ? -83.89 -75.20 102 11 ALA A 110 ? ? -52.75 108.49 103 11 PRO A 116 ? ? -69.74 -163.74 104 12 VAL A 17 ? ? -47.31 153.60 105 12 GLU A 46 ? ? -102.43 73.82 106 12 ALA A 47 ? ? -100.31 64.47 107 12 ASN A 48 ? ? -38.61 -35.75 108 12 ASN A 77 ? ? 36.95 31.10 109 12 SER A 101 ? ? -36.18 -36.65 110 12 LYS A 102 ? ? -65.64 -74.40 111 12 PRO A 116 ? ? -69.77 -163.67 112 12 ALA A 118 ? ? -85.20 44.30 113 12 PRO A 121 ? ? -69.69 -179.27 114 13 PRO A 18 ? ? -69.79 99.95 115 13 PRO A 22 ? ? -69.86 -170.30 116 13 GLU A 46 ? ? -80.75 47.60 117 13 ASN A 48 ? ? 39.44 25.10 118 13 ASN A 63 ? ? -97.55 32.96 119 13 ILE A 66 ? ? -34.27 -37.44 120 13 LYS A 102 ? ? -74.56 -70.82 121 13 PRO A 116 ? ? -69.75 -164.04 122 13 PRO A 121 ? ? -69.73 94.80 123 14 SER A 6 ? ? -49.91 101.61 124 14 HIS A 10 ? ? -91.55 55.47 125 14 PRO A 22 ? ? -69.71 -177.38 126 14 ASN A 48 ? ? -75.89 49.39 127 14 THR A 60 ? ? -82.64 46.94 128 14 ASP A 89 ? ? 32.49 54.26 129 14 LYS A 102 ? ? -62.93 -72.57 130 14 PRO A 116 ? ? -69.71 -163.82 131 14 SER A 123 ? ? -95.26 -61.16 132 15 HIS A 10 ? ? -35.65 -39.84 133 15 VAL A 17 ? ? -45.55 152.26 134 15 PRO A 22 ? ? -69.76 -177.54 135 15 ALA A 47 ? ? 33.97 45.13 136 15 ASN A 48 ? ? -36.29 -30.87 137 15 LYS A 102 ? ? -68.89 -72.19 138 15 PRO A 116 ? ? -69.80 -163.59 139 15 PRO A 121 ? ? -69.84 89.68 140 16 THR A 8 ? ? -35.63 140.11 141 16 PRO A 18 ? ? -69.75 97.03 142 16 TRP A 41 ? ? -174.99 -176.11 143 16 ALA A 47 ? ? -102.12 65.22 144 16 SER A 59 ? ? -174.13 132.15 145 16 ILE A 66 ? ? -38.90 -28.15 146 16 ASN A 77 ? ? -85.89 43.89 147 16 LYS A 102 ? ? -73.57 -70.53 148 16 PRO A 116 ? ? -69.75 -163.75 149 17 THR A 13 ? ? -36.88 134.59 150 17 TRP A 41 ? ? -171.01 -176.84 151 17 ASN A 48 ? ? 39.38 25.02 152 17 ASN A 77 ? ? -86.88 36.29 153 17 ASP A 89 ? ? 36.91 43.62 154 17 LYS A 102 ? ? -65.95 -73.57 155 17 PRO A 116 ? ? -69.76 -163.70 156 17 ALA A 118 ? ? -79.58 45.27 157 17 SER A 119 ? ? -89.63 48.60 158 18 SER A 6 ? ? -96.36 49.20 159 18 THR A 12 ? ? -45.10 106.48 160 18 VAL A 17 ? ? -44.97 154.10 161 18 ALA A 47 ? ? 34.29 51.37 162 18 ASN A 48 ? ? -34.34 -35.16 163 18 SER A 59 ? ? -171.18 144.06 164 18 ASN A 77 ? ? -91.94 42.16 165 18 ASP A 89 ? ? 36.28 43.31 166 18 LYS A 102 ? ? -83.89 -75.08 167 18 PRO A 116 ? ? -69.73 -163.82 168 18 SER A 122 ? ? -38.30 104.07 169 19 HIS A 10 ? ? -93.17 42.22 170 19 PRO A 18 ? ? -69.78 98.68 171 19 SER A 45 ? ? -39.94 -33.57 172 19 ALA A 47 ? ? 37.89 51.41 173 19 ASN A 48 ? ? -36.53 -29.90 174 19 LYS A 50 ? ? -55.10 108.03 175 19 ILE A 66 ? ? -34.86 -31.99 176 19 ARG A 78 ? ? -34.32 145.77 177 19 ASP A 89 ? ? 38.75 41.10 178 19 LYS A 102 ? ? -81.51 -75.55 179 19 PRO A 116 ? ? -69.71 -163.49 180 19 ALA A 118 ? ? -82.92 39.50 181 20 THR A 8 ? ? -101.81 58.27 182 20 VAL A 17 ? ? -44.93 152.67 183 20 PRO A 18 ? ? -69.80 98.55 184 20 PRO A 22 ? ? -69.77 -175.51 185 20 TRP A 41 ? ? -174.46 -179.69 186 20 ALA A 47 ? ? 34.49 45.44 187 20 THR A 60 ? ? -84.78 47.33 188 20 ASP A 61 ? ? -171.89 118.47 189 20 ASP A 89 ? ? 38.21 39.63 190 20 LYS A 102 ? ? -66.81 -75.07 191 20 ALA A 110 ? ? -55.84 106.53 192 20 PRO A 116 ? ? -69.77 -163.54 193 20 ALA A 118 ? ? -81.08 42.94 #