data_1X5Z # _entry.id 1X5Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5Z pdb_00001x5z 10.2210/pdb1x5z/pdb RCSB RCSB024421 ? ? WWPDB D_1000024421 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001101.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5Z _pdbx_database_status.recvd_initial_deposition_date 2005-05-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Saito, K.' 2 'Tochio, N.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the fibronectin type-III domain of human protein tyrosine phosphatase, receptor type, D isoform 4 variant' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Saito, K.' 2 ? primary 'Tochio, N.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Receptor-type tyrosine-protein phosphatase delta' _entity.formula_weight 12272.406 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.3.48 _entity.pdbx_mutation ? _entity.pdbx_fragment 'Fibronectin type-III domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein-tyrosine phosphatase delta, R-PTP-delta, Protein tyrosine phosphatase, receptor type, D isoform 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPN SLYYFRLAARSPQGLGASTAEISARTMQSSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPN SLYYFRLAARSPQGLGASTAEISARTMQSSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001101.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 ILE n 1 10 GLN n 1 11 VAL n 1 12 ILE n 1 13 THR n 1 14 GLN n 1 15 THR n 1 16 GLY n 1 17 VAL n 1 18 PRO n 1 19 GLY n 1 20 GLN n 1 21 PRO n 1 22 LEU n 1 23 ASN n 1 24 PHE n 1 25 LYS n 1 26 ALA n 1 27 GLU n 1 28 PRO n 1 29 GLU n 1 30 SER n 1 31 GLU n 1 32 THR n 1 33 SER n 1 34 ILE n 1 35 LEU n 1 36 LEU n 1 37 SER n 1 38 TRP n 1 39 THR n 1 40 PRO n 1 41 PRO n 1 42 ARG n 1 43 SER n 1 44 ASP n 1 45 THR n 1 46 ILE n 1 47 ALA n 1 48 ASN n 1 49 TYR n 1 50 GLU n 1 51 LEU n 1 52 VAL n 1 53 TYR n 1 54 LYS n 1 55 ASP n 1 56 GLY n 1 57 GLU n 1 58 HIS n 1 59 GLY n 1 60 GLU n 1 61 GLU n 1 62 GLN n 1 63 ARG n 1 64 ILE n 1 65 THR n 1 66 ILE n 1 67 GLU n 1 68 PRO n 1 69 GLY n 1 70 THR n 1 71 SER n 1 72 TYR n 1 73 ARG n 1 74 LEU n 1 75 GLN n 1 76 GLY n 1 77 LEU n 1 78 LYS n 1 79 PRO n 1 80 ASN n 1 81 SER n 1 82 LEU n 1 83 TYR n 1 84 TYR n 1 85 PHE n 1 86 ARG n 1 87 LEU n 1 88 ALA n 1 89 ALA n 1 90 ARG n 1 91 SER n 1 92 PRO n 1 93 GLN n 1 94 GLY n 1 95 LEU n 1 96 GLY n 1 97 ALA n 1 98 SER n 1 99 THR n 1 100 ALA n 1 101 GLU n 1 102 ILE n 1 103 SER n 1 104 ALA n 1 105 ARG n 1 106 THR n 1 107 MET n 1 108 GLN n 1 109 SER n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 SER n 1 114 SER n 1 115 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PTPRD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050131-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTPRD_HUMAN _struct_ref.pdbx_db_accession P23468 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRL AARSPQGLGASTAEISARTMQS ; _struct_ref.pdbx_align_begin 506 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23468 _struct_ref_seq.db_align_beg 506 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 607 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5Z GLY A 1 ? UNP P23468 ? ? 'cloning artifact' 1 1 1 1X5Z SER A 2 ? UNP P23468 ? ? 'cloning artifact' 2 2 1 1X5Z SER A 3 ? UNP P23468 ? ? 'cloning artifact' 3 3 1 1X5Z GLY A 4 ? UNP P23468 ? ? 'cloning artifact' 4 4 1 1X5Z SER A 5 ? UNP P23468 ? ? 'cloning artifact' 5 5 1 1X5Z SER A 6 ? UNP P23468 ? ? 'cloning artifact' 6 6 1 1X5Z GLY A 7 ? UNP P23468 ? ? 'cloning artifact' 7 7 1 1X5Z SER A 110 ? UNP P23468 ? ? 'cloning artifact' 110 8 1 1X5Z GLY A 111 ? UNP P23468 ? ? 'cloning artifact' 111 9 1 1X5Z PRO A 112 ? UNP P23468 ? ? 'cloning artifact' 112 10 1 1X5Z SER A 113 ? UNP P23468 ? ? 'cloning artifact' 113 11 1 1X5Z SER A 114 ? UNP P23468 ? ? 'cloning artifact' 114 12 1 1X5Z GLY A 115 ? UNP P23468 ? ? 'cloning artifact' 115 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.37mM fn3 domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5Z _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5Z _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5Z _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20020425 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5Z _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5Z _struct.title 'Solution structure of the fibronectin type-III domain of human protein tyrosine phosphatase, receptor type, D isoform 4 variant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5Z _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Fibronectin type III domain containing protein, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 22 ? GLU A 27 ? LEU A 22 GLU A 27 A 2 SER A 33 ? THR A 39 ? SER A 33 THR A 39 A 3 SER A 71 ? GLN A 75 ? SER A 71 GLN A 75 B 1 THR A 65 ? ILE A 66 ? THR A 65 ILE A 66 B 2 ASN A 48 ? LEU A 51 ? ASN A 48 LEU A 51 B 3 LEU A 87 ? ARG A 90 ? LEU A 87 ARG A 90 B 4 LEU A 95 ? SER A 98 ? LEU A 95 SER A 98 C 1 LYS A 54 ? ASP A 55 ? LYS A 54 ASP A 55 C 2 LEU A 82 ? PHE A 85 ? LEU A 82 PHE A 85 C 3 ILE A 102 ? ARG A 105 ? ILE A 102 ARG A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 25 ? N LYS A 25 O SER A 37 ? O SER A 37 A 2 3 N ILE A 34 ? N ILE A 34 O LEU A 74 ? O LEU A 74 B 1 2 O ILE A 66 ? O ILE A 66 N TYR A 49 ? N TYR A 49 B 2 3 N ASN A 48 ? N ASN A 48 O ARG A 90 ? O ARG A 90 B 3 4 N ALA A 89 ? N ALA A 89 O GLY A 96 ? O GLY A 96 C 1 2 N LYS A 54 ? N LYS A 54 O TYR A 84 ? O TYR A 84 C 2 3 N PHE A 85 ? N PHE A 85 O ILE A 102 ? O ILE A 102 # _database_PDB_matrix.entry_id 1X5Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -129.77 -54.78 2 1 GLN A 20 ? ? -37.51 144.46 3 1 PRO A 28 ? ? -69.76 92.19 4 1 PRO A 41 ? ? -69.82 -177.46 5 1 SER A 43 ? ? -46.49 108.13 6 1 ASP A 55 ? ? -56.11 103.08 7 1 HIS A 58 ? ? -91.88 31.62 8 1 PRO A 68 ? ? -69.73 82.03 9 1 ASN A 80 ? ? 37.25 51.80 10 1 ALA A 88 ? ? -162.83 108.22 11 1 PRO A 112 ? ? -69.79 86.48 12 2 GLN A 10 ? ? -67.65 94.68 13 2 GLN A 20 ? ? -38.96 145.80 14 2 PRO A 28 ? ? -69.77 93.13 15 2 SER A 43 ? ? -49.37 104.79 16 2 HIS A 58 ? ? -89.65 34.00 17 2 PRO A 68 ? ? -69.75 83.16 18 2 ALA A 100 ? ? -42.50 154.53 19 3 VAL A 17 ? ? -39.23 146.68 20 3 PRO A 28 ? ? -69.77 96.96 21 3 PRO A 41 ? ? -69.85 -176.71 22 3 ASN A 48 ? ? -176.24 -175.75 23 3 PRO A 68 ? ? -69.74 79.89 24 3 THR A 70 ? ? -131.93 -34.30 25 3 PRO A 92 ? ? -69.78 2.02 26 4 ASP A 8 ? ? -69.93 79.24 27 4 GLN A 10 ? ? -104.07 41.08 28 4 THR A 13 ? ? -83.97 31.25 29 4 GLN A 20 ? ? -34.56 148.29 30 4 PRO A 41 ? ? -69.73 -165.16 31 4 SER A 43 ? ? -45.76 102.01 32 4 ASN A 48 ? ? -176.60 -175.03 33 4 ASP A 55 ? ? -55.47 100.38 34 4 PRO A 68 ? ? -69.79 80.48 35 4 ALA A 88 ? ? -164.68 105.54 36 4 THR A 106 ? ? -59.60 176.25 37 4 GLN A 108 ? ? -52.19 86.00 38 5 THR A 15 ? ? -39.10 126.43 39 5 GLN A 20 ? ? -35.32 144.05 40 5 PRO A 28 ? ? -69.69 93.08 41 5 SER A 43 ? ? -48.77 103.23 42 5 HIS A 58 ? ? -86.54 30.82 43 5 PRO A 68 ? ? -69.71 82.29 44 5 ALA A 88 ? ? -165.85 105.36 45 5 PRO A 92 ? ? -69.81 2.17 46 6 SER A 6 ? ? -174.87 113.82 47 6 GLN A 20 ? ? -34.51 146.13 48 6 PRO A 21 ? ? -69.80 -176.79 49 6 SER A 43 ? ? -43.76 103.40 50 6 PRO A 68 ? ? -69.70 80.27 51 6 PRO A 92 ? ? -69.69 2.73 52 6 SER A 109 ? ? -35.11 145.48 53 7 GLN A 10 ? ? -164.11 119.50 54 7 GLN A 20 ? ? -39.76 148.81 55 7 SER A 43 ? ? -45.51 98.35 56 7 ASP A 55 ? ? -54.45 105.24 57 7 PRO A 68 ? ? -69.76 81.52 58 8 SER A 3 ? ? -68.29 80.10 59 8 PRO A 28 ? ? -69.75 97.34 60 8 PRO A 41 ? ? -69.76 -178.02 61 8 SER A 43 ? ? -58.44 96.04 62 8 THR A 45 ? ? -68.66 98.61 63 8 PRO A 68 ? ? -69.72 82.07 64 8 ALA A 88 ? ? -163.75 106.62 65 8 PRO A 92 ? ? -69.78 2.51 66 8 THR A 99 ? ? -52.64 175.67 67 8 GLN A 108 ? ? -85.80 39.00 68 8 PRO A 112 ? ? -69.76 2.66 69 9 ILE A 12 ? ? -75.33 -71.92 70 9 SER A 43 ? ? -45.32 97.84 71 9 THR A 45 ? ? -68.92 97.13 72 9 PRO A 68 ? ? -69.80 80.05 73 9 ALA A 88 ? ? -161.90 107.41 74 9 SER A 109 ? ? -51.86 107.98 75 10 ASN A 48 ? ? -173.77 -179.81 76 10 PRO A 68 ? ? -69.71 80.30 77 10 ASN A 80 ? ? 37.87 52.96 78 10 ALA A 88 ? ? -164.35 107.11 79 10 PRO A 92 ? ? -69.71 2.75 80 10 SER A 109 ? ? -49.17 97.52 81 11 SER A 2 ? ? -90.56 43.04 82 11 SER A 5 ? ? -130.28 -44.84 83 11 VAL A 11 ? ? -88.20 -74.87 84 11 ILE A 12 ? ? -59.96 95.06 85 11 ASN A 23 ? ? 38.26 39.20 86 11 PRO A 28 ? ? -69.76 92.16 87 11 PRO A 41 ? ? -69.79 -175.64 88 11 ASN A 48 ? ? -174.64 -177.41 89 11 HIS A 58 ? ? -89.64 34.05 90 11 PRO A 68 ? ? -69.83 80.86 91 11 ASN A 80 ? ? 37.90 48.01 92 11 ALA A 88 ? ? -165.45 105.51 93 12 SER A 2 ? ? -48.42 170.33 94 12 GLN A 20 ? ? -34.71 148.47 95 12 PRO A 28 ? ? -69.71 93.26 96 12 HIS A 58 ? ? -91.74 32.38 97 12 PRO A 68 ? ? -69.76 80.23 98 12 PRO A 92 ? ? -69.80 1.14 99 12 SER A 109 ? ? -83.30 42.51 100 13 ILE A 12 ? ? -39.31 145.97 101 13 GLN A 14 ? ? -170.41 112.06 102 13 SER A 43 ? ? -53.10 100.47 103 13 THR A 45 ? ? -69.68 97.34 104 13 HIS A 58 ? ? -84.56 33.65 105 13 PRO A 68 ? ? -69.78 80.01 106 13 ALA A 88 ? ? -160.99 105.47 107 13 PRO A 92 ? ? -69.72 0.94 108 13 GLN A 108 ? ? -55.05 107.13 109 14 GLN A 10 ? ? -172.54 116.63 110 14 GLN A 20 ? ? -39.66 142.82 111 14 PRO A 28 ? ? -69.80 99.35 112 14 PRO A 41 ? ? -69.75 -172.60 113 14 SER A 43 ? ? -40.18 100.41 114 14 PRO A 68 ? ? -69.77 81.81 115 14 THR A 99 ? ? -59.50 171.05 116 15 GLN A 20 ? ? -38.39 142.84 117 15 SER A 43 ? ? -48.20 104.96 118 15 HIS A 58 ? ? -88.30 33.41 119 15 PRO A 68 ? ? -69.68 80.66 120 15 THR A 70 ? ? -133.85 -37.09 121 15 ALA A 89 ? ? -33.92 139.62 122 15 PRO A 92 ? ? -69.75 0.99 123 16 ASP A 8 ? ? -109.93 44.78 124 16 GLN A 20 ? ? -35.25 148.50 125 16 ASN A 23 ? ? 38.32 50.96 126 16 PRO A 28 ? ? -69.72 97.21 127 16 PRO A 41 ? ? -69.78 -168.40 128 16 SER A 43 ? ? -59.22 96.05 129 16 THR A 45 ? ? -69.27 96.49 130 16 PRO A 68 ? ? -69.79 80.09 131 16 ASN A 80 ? ? 36.76 51.88 132 16 ALA A 88 ? ? -160.34 106.46 133 16 GLU A 101 ? ? -59.58 105.20 134 16 SER A 110 ? ? -170.86 144.50 135 17 ILE A 12 ? ? -88.51 41.89 136 17 PRO A 28 ? ? -69.78 99.23 137 17 SER A 43 ? ? -37.61 106.02 138 17 ASP A 55 ? ? -53.86 103.02 139 17 HIS A 58 ? ? -91.73 33.44 140 17 PRO A 68 ? ? -69.69 80.29 141 17 ALA A 88 ? ? -163.21 106.38 142 17 THR A 99 ? ? -59.71 -176.70 143 18 ILE A 9 ? ? 32.81 48.77 144 18 GLN A 20 ? ? -39.97 145.52 145 18 SER A 43 ? ? -38.19 127.74 146 18 ASN A 48 ? ? -176.41 -175.38 147 18 GLU A 61 ? ? -66.49 95.10 148 18 PRO A 68 ? ? -69.72 80.00 149 18 ASN A 80 ? ? 34.96 52.80 150 18 THR A 99 ? ? -62.06 -176.85 151 18 THR A 106 ? ? -59.97 171.74 152 19 SER A 6 ? ? -51.93 173.70 153 19 THR A 15 ? ? -99.88 -68.44 154 19 GLN A 20 ? ? -34.72 143.07 155 19 PRO A 41 ? ? -69.78 -179.80 156 19 SER A 43 ? ? -34.78 109.02 157 19 HIS A 58 ? ? -92.35 30.75 158 19 PRO A 68 ? ? -69.65 80.63 159 19 ALA A 88 ? ? -164.22 106.85 160 19 PRO A 92 ? ? -69.80 2.54 161 20 GLN A 20 ? ? -38.10 146.93 162 20 PRO A 21 ? ? -69.71 -173.65 163 20 PRO A 28 ? ? -69.80 94.39 164 20 SER A 43 ? ? -44.17 94.97 165 20 PRO A 68 ? ? -69.73 80.79 166 20 THR A 70 ? ? -131.50 -31.75 167 20 ASN A 80 ? ? 39.83 52.53 #