HEADER ISOMERASE/SIGNALING PROTEIN 13-AUG-04 1X75 TITLE CCDB:GYRA14 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 363-494; COMPND 5 SYNONYM: GYRA14; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYTOTOXIC PROTEIN CCDB; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: CCDB; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GYRASE, CCDB, TOPOISOMERASE, PLASMID ADDICTION, TA SYSTEM, BACTERIAL KEYWDS 2 CELL DEATH, ISOMERASE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.DAO-THI,L.VAN MELDEREN,E.DE GENST,L.WYNS,R.LORIS REVDAT 3 13-MAR-24 1X75 1 REMARK REVDAT 2 24-FEB-09 1X75 1 VERSN REVDAT 1 17-MAY-05 1X75 0 JRNL AUTH M.H.DAO-THI,L.VAN MELDEREN,E.DE GENST,H.AFIF,L.BUTS,L.WYNS, JRNL AUTH 2 R.LORIS JRNL TITL MOLECULAR BASIS OF GYRASE POISONING BY THE ADDICTION TOXIN JRNL TITL 2 CCDB JRNL REF J.MOL.BIOL. V. 348 1091 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15854646 JRNL DOI 10.1016/J.JMB.2005.03.049 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.797 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-4000, KCL, CACL2, NA-CACODYLATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.06200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.45950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.67200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.45950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.06200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.67200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HETEROTETRAMER CONSISTING OF A CCDB DIMER AND A GYRA14 DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 418 REMARK 465 ARG A 426 REMARK 465 ALA A 427 REMARK 465 GLY A 428 REMARK 465 ARG B 426 REMARK 465 ALA B 427 REMARK 465 GLY B 428 REMARK 465 ARG C 10 REMARK 465 GLU C 11 REMARK 465 SER D 12 REMARK 465 ARG D 13 REMARK 465 TYR D 14 REMARK 465 ASP D 44 REMARK 465 LYS D 45 REMARK 465 VAL D 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 364 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 365 CD NE CZ NH1 NH2 REMARK 470 ARG A 371 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 GLU A 395 CD OE1 OE2 REMARK 470 ASN A 413 CB CG OD1 ND2 REMARK 470 GLN A 416 CG CD OE1 NE2 REMARK 470 ASN A 419 N CA CB CG OD1 ND2 REMARK 470 LEU A 424 CG CD1 CD2 REMARK 470 GLU A 435 CG CD OE1 OE2 REMARK 470 LEU A 437 CG CD1 CD2 REMARK 470 GLU A 440 CD OE1 OE2 REMARK 470 ARG A 444 NE CZ NH1 NH2 REMARK 470 TYR A 449 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 453 OE1 NE2 REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 GLU A 472 CD OE1 OE2 REMARK 470 LYS A 473 CE NZ REMARK 470 LYS A 479 CE NZ REMARK 470 GLU A 487 CD OE1 OE2 REMARK 470 ARG A 490 CD NE CZ NH1 NH2 REMARK 470 LEU A 492 CB CG CD1 CD2 REMARK 470 ARG B 364 CD NE CZ NH1 NH2 REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 369 OE1 OE2 REMARK 470 LYS B 372 CD CE NZ REMARK 470 GLU B 395 CD OE1 OE2 REMARK 470 LEU B 424 CG CD1 CD2 REMARK 470 ASP B 429 CB CG OD1 OD2 REMARK 470 GLU B 435 CB CG CD OE1 OE2 REMARK 470 GLU B 438 CG CD OE1 OE2 REMARK 470 GLU B 440 CG CD OE1 OE2 REMARK 470 LEU B 469 CG CD1 CD2 REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 470 LYS B 473 CE NZ REMARK 470 LYS B 479 CE NZ REMARK 470 GLU B 487 OE1 OE2 REMARK 470 ARG B 490 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 491 CD1 REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 ARG C 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 LEU C 42 CD1 CD2 REMARK 470 ASP C 44 CG OD1 OD2 REMARK 470 LYS C 45 CB CG CD CE NZ REMARK 470 ARG C 48 CZ NH1 NH2 REMARK 470 ASP C 58 CB CG OD1 OD2 REMARK 470 GLU C 78 CB CG CD OE1 OE2 REMARK 470 LYS C 91 CD CE NZ REMARK 470 MET C 97 CE REMARK 470 ARG D 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 49 OE1 OE2 REMARK 470 ASP D 58 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C THR C 27 CD PRO C 28 1.73 REMARK 500 ND2 ASN D 95 OXT ILE D 101 1.85 REMARK 500 NH1 ARG A 462 OD1 ASN D 95 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 414 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 PRO C 28 C - N - CA ANGL. DEV. = 51.8 DEGREES REMARK 500 PRO C 28 C - N - CD ANGL. DEV. = -53.0 DEGREES REMARK 500 PRO C 28 CA - N - CD ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 389 56.09 -154.98 REMARK 500 ARG A 398 1.87 -68.06 REMARK 500 LEU A 424 9.76 -53.51 REMARK 500 ASP A 445 48.84 90.96 REMARK 500 ASN B 389 51.15 -147.76 REMARK 500 ASP B 445 42.05 95.33 REMARK 500 TYR C 6 -166.19 -110.19 REMARK 500 ARG C 13 -61.77 62.02 REMARK 500 PRO C 28 119.30 58.66 REMARK 500 ARG C 31 129.60 -176.44 REMARK 500 LEU C 41 -5.72 -55.37 REMARK 500 ASP C 44 -1.01 -58.23 REMARK 500 TYR C 51 73.15 -118.77 REMARK 500 ALA C 81 166.62 179.29 REMARK 500 ARG D 10 130.67 -177.23 REMARK 500 PRO D 28 -58.53 -10.77 REMARK 500 ARG D 31 132.03 -172.56 REMARK 500 ARG D 40 -69.03 -28.72 REMARK 500 LEU D 41 0.75 -51.23 REMARK 500 ASP D 58 49.64 -78.68 REMARK 500 MET D 68 150.49 -48.18 REMARK 500 SER D 84 -30.18 -39.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AB4 RELATED DB: PDB REMARK 900 59KD GYRA59 FRAGMENT OF E. COLI GYRASE REMARK 900 RELATED ID: 1VUB RELATED DB: PDB REMARK 900 CCDB, TETRAGONAL FORM REMARK 900 RELATED ID: 2VUB RELATED DB: PDB REMARK 900 CCDB, ORTORHOMBIC FORM REMARK 900 RELATED ID: 3VUB RELATED DB: PDB REMARK 900 CCDB, MONOCLINIC FORM (ROOM TEMPERATURE) REMARK 900 RELATED ID: 4VUB RELATED DB: PDB REMARK 900 CCDB, MONOCLINIC FORM (100 K) DBREF 1X75 A 363 494 UNP P09097 GYRA_ECOLI 363 494 DBREF 1X75 B 363 494 UNP P09097 GYRA_ECOLI 363 494 DBREF 1X75 C 1 101 UNP P62555 CCDB_ECO57 1 101 DBREF 1X75 D 1 101 UNP P62555 CCDB_ECO57 1 101 SEQRES 1 A 132 THR ARG ARG THR ILE PHE GLU LEU ARG LYS ALA ARG ASP SEQRES 2 A 132 ARG ALA HIS ILE LEU GLU ALA LEU ALA VAL ALA LEU ALA SEQRES 3 A 132 ASN ILE ASP PRO ILE ILE GLU LEU ILE ARG HIS ALA PRO SEQRES 4 A 132 THR PRO ALA GLU ALA LYS THR ALA LEU VAL ALA ASN PRO SEQRES 5 A 132 TRP GLN LEU GLY ASN VAL ALA ALA MET LEU GLU ARG ALA SEQRES 6 A 132 GLY ASP ASP ALA ALA ARG PRO GLU TRP LEU GLU PRO GLU SEQRES 7 A 132 PHE GLY VAL ARG ASP GLY LEU TYR TYR LEU THR GLU GLN SEQRES 8 A 132 GLN ALA GLN ALA ILE LEU ASP LEU ARG LEU GLN LYS LEU SEQRES 9 A 132 THR GLY LEU GLU HIS GLU LYS LEU LEU ASP GLU TYR LYS SEQRES 10 A 132 GLU LEU LEU ASP GLN ILE ALA GLU LEU LEU ARG ILE LEU SEQRES 11 A 132 GLY SER SEQRES 1 B 132 THR ARG ARG THR ILE PHE GLU LEU ARG LYS ALA ARG ASP SEQRES 2 B 132 ARG ALA HIS ILE LEU GLU ALA LEU ALA VAL ALA LEU ALA SEQRES 3 B 132 ASN ILE ASP PRO ILE ILE GLU LEU ILE ARG HIS ALA PRO SEQRES 4 B 132 THR PRO ALA GLU ALA LYS THR ALA LEU VAL ALA ASN PRO SEQRES 5 B 132 TRP GLN LEU GLY ASN VAL ALA ALA MET LEU GLU ARG ALA SEQRES 6 B 132 GLY ASP ASP ALA ALA ARG PRO GLU TRP LEU GLU PRO GLU SEQRES 7 B 132 PHE GLY VAL ARG ASP GLY LEU TYR TYR LEU THR GLU GLN SEQRES 8 B 132 GLN ALA GLN ALA ILE LEU ASP LEU ARG LEU GLN LYS LEU SEQRES 9 B 132 THR GLY LEU GLU HIS GLU LYS LEU LEU ASP GLU TYR LYS SEQRES 10 B 132 GLU LEU LEU ASP GLN ILE ALA GLU LEU LEU ARG ILE LEU SEQRES 11 B 132 GLY SER SEQRES 1 C 101 MET GLN PHE LYS VAL TYR THR TYR LYS ARG GLU SER ARG SEQRES 2 C 101 TYR ARG LEU PHE VAL ASP VAL GLN SER ASP ILE ILE ASP SEQRES 3 C 101 THR PRO GLY ARG ARG MET VAL ILE PRO LEU ALA SER ALA SEQRES 4 C 101 ARG LEU LEU SER ASP LYS VAL SER ARG GLU LEU TYR PRO SEQRES 5 C 101 VAL VAL HIS ILE GLY ASP GLU SER TRP ARG MET MET THR SEQRES 6 C 101 THR ASP MET ALA SER VAL PRO VAL SER VAL ILE GLY GLU SEQRES 7 C 101 GLU VAL ALA ASP LEU SER HIS ARG GLU ASN ASP ILE LYS SEQRES 8 C 101 ASN ALA ILE ASN LEU MET PHE TRP GLY ILE SEQRES 1 D 101 MET GLN PHE LYS VAL TYR THR TYR LYS ARG GLU SER ARG SEQRES 2 D 101 TYR ARG LEU PHE VAL ASP VAL GLN SER ASP ILE ILE ASP SEQRES 3 D 101 THR PRO GLY ARG ARG MET VAL ILE PRO LEU ALA SER ALA SEQRES 4 D 101 ARG LEU LEU SER ASP LYS VAL SER ARG GLU LEU TYR PRO SEQRES 5 D 101 VAL VAL HIS ILE GLY ASP GLU SER TRP ARG MET MET THR SEQRES 6 D 101 THR ASP MET ALA SER VAL PRO VAL SER VAL ILE GLY GLU SEQRES 7 D 101 GLU VAL ALA ASP LEU SER HIS ARG GLU ASN ASP ILE LYS SEQRES 8 D 101 ASN ALA ILE ASN LEU MET PHE TRP GLY ILE FORMUL 5 HOH *57(H2 O) HELIX 1 1 THR A 363 ASN A 389 1 27 HELIX 2 2 ASN A 389 ARG A 398 1 10 HELIX 3 3 THR A 402 ASN A 413 1 12 HELIX 4 4 THR A 451 ASP A 460 1 10 HELIX 5 5 ARG A 462 LEU A 466 5 5 HELIX 6 6 THR A 467 SER A 494 1 28 HELIX 7 7 THR B 363 ASN B 389 1 27 HELIX 8 8 ASN B 389 ARG B 398 1 10 HELIX 9 9 THR B 402 ASN B 413 1 12 HELIX 10 10 VAL B 420 GLU B 425 1 6 HELIX 11 11 THR B 451 ASP B 460 1 10 HELIX 12 12 ARG B 462 LEU B 466 5 5 HELIX 13 13 THR B 467 SER B 494 1 28 HELIX 14 14 ARG C 40 LEU C 42 5 3 HELIX 15 15 THR C 65 MET C 68 5 4 HELIX 16 16 PRO C 72 ILE C 76 5 5 HELIX 17 17 ARG C 86 GLY C 100 1 15 HELIX 18 18 THR D 65 MET D 68 5 4 HELIX 19 19 ARG D 86 TRP D 99 1 14 SHEET 1 A 3 TRP A 415 GLN A 416 0 SHEET 2 A 3 LEU A 447 TYR A 449 -1 O TYR A 448 N TRP A 415 SHEET 3 A 3 GLY A 442 VAL A 443 -1 N GLY A 442 O TYR A 449 SHEET 1 B 3 TRP B 415 GLN B 416 0 SHEET 2 B 3 LEU B 447 TYR B 449 -1 O TYR B 448 N TRP B 415 SHEET 3 B 3 GLY B 442 VAL B 443 -1 N GLY B 442 O TYR B 449 SHEET 1 C 4 VAL C 53 ILE C 56 0 SHEET 2 C 4 GLU C 59 MET C 63 -1 O TRP C 61 N VAL C 54 SHEET 3 C 4 MET C 32 SER C 38 -1 N ALA C 37 O ARG C 62 SHEET 4 C 4 ALA C 69 SER C 70 -1 O ALA C 69 N VAL C 33 SHEET 1 D 6 VAL C 53 ILE C 56 0 SHEET 2 D 6 GLU C 59 MET C 63 -1 O TRP C 61 N VAL C 54 SHEET 3 D 6 MET C 32 SER C 38 -1 N ALA C 37 O ARG C 62 SHEET 4 D 6 LEU C 16 ASP C 19 -1 N LEU C 16 O LEU C 36 SHEET 5 D 6 LYS C 4 TYR C 6 -1 N LYS C 4 O ASP C 19 SHEET 6 D 6 ALA C 81 ASP C 82 -1 O ALA C 81 N VAL C 5 SHEET 1 E 4 VAL D 53 HIS D 55 0 SHEET 2 E 4 SER D 60 MET D 63 -1 O TRP D 61 N VAL D 54 SHEET 3 E 4 MET D 32 SER D 38 -1 N ALA D 37 O ARG D 62 SHEET 4 E 4 ALA D 69 SER D 70 -1 O ALA D 69 N VAL D 33 SHEET 1 F 6 VAL D 53 HIS D 55 0 SHEET 2 F 6 SER D 60 MET D 63 -1 O TRP D 61 N VAL D 54 SHEET 3 F 6 MET D 32 SER D 38 -1 N ALA D 37 O ARG D 62 SHEET 4 F 6 PHE D 17 ASP D 19 -1 N VAL D 18 O ILE D 34 SHEET 5 F 6 LYS D 4 TYR D 8 -1 N LYS D 4 O ASP D 19 SHEET 6 F 6 ILE D 76 ASP D 82 -1 O GLY D 77 N THR D 7 CRYST1 52.124 83.344 110.919 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009016 0.00000