HEADER TRANSFERASE 16-AUG-04 1X81 TITLE FARNESYL TRANSFERASE STRUCTURE OF JANSEN COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE COMPND 3 I ALPHA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 55-369; COMPND 6 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT, RAS PROTEINS COMPND 7 PRENYLTRANSFERASE ALPHA, FTASE-ALPHA, TYPE I PROTEIN GERANYL- COMPND 8 GERANYLTRANSFERASE ALPHA SUBUNIT, GGTASE-I-ALPHA; COMPND 9 EC: 2.5.1.58, 2.5.1.59; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RESIDUES 22-418; COMPND 14 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT, RAS PROTEINS COMPND 15 PRENYLTRANSFERASE BETA, FTASE-BETA; COMPND 16 EC: 2.5.1.58 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 7 ORGANISM_COMMON: NORWAY RAT; SOURCE 8 ORGANISM_TAXID: 10116 KEYWDS FANESYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LI,A.CLAIBORNE,T.LI,L.HASVOLD,V.S.STOLL,S.MUCHMORE,C.G.JAKOB,W.GU, AUTHOR 2 J.COHEN,C.HUTCHINS,D.FROST,S.H.ROSENBERG,H.L.SHAM REVDAT 3 14-FEB-24 1X81 1 REMARK REVDAT 2 24-FEB-09 1X81 1 VERSN REVDAT 1 21-DEC-04 1X81 0 JRNL AUTH Q.LI,A.CLAIBORNE,T.LI,L.HASVOLD,V.S.STOLL,S.MUCHMORE, JRNL AUTH 2 C.G.JAKOB,W.GU,J.COHEN,C.HUTCHINS,D.FROST,S.H.ROSENBERG, JRNL AUTH 3 H.L.SHAM JRNL TITL DESIGN, SYNTHESIS, AND ACTIVITY OF 4-QUINOLONE AND PYRIDONE JRNL TITL 2 COMPOUNDS AS NONTHIOL-CONTAINING FARNESYLTRANSFERASE JRNL TITL 3 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 14 5367 2004 JRNL REFN ISSN 0960-894X JRNL PMID 15454228 JRNL DOI 10.1016/J.BMCL.2004.08.012 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 7.8 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13627 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.04433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.08867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.56650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.61083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.52217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 149 OG1 THR B 153 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 86 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO A 271 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 56 -131.87 -67.57 REMARK 500 ASP A 68 35.35 -84.33 REMARK 500 VAL A 88 47.46 28.20 REMARK 500 TYR A 92 151.25 -38.99 REMARK 500 SER A 93 -162.80 -72.35 REMARK 500 ASP A 98 -70.89 -45.33 REMARK 500 ASN A 127 72.37 -166.27 REMARK 500 ASP A 147 97.63 -61.38 REMARK 500 PRO A 163 -3.77 -59.94 REMARK 500 GLN A 184 -103.95 -101.25 REMARK 500 GLU A 185 -83.50 44.13 REMARK 500 ARG A 214 40.39 38.47 REMARK 500 LEU A 215 40.20 -91.33 REMARK 500 TRP A 216 -80.82 -59.48 REMARK 500 ASP A 217 -92.81 32.67 REMARK 500 ASP A 230 97.41 -179.38 REMARK 500 ASN A 233 91.24 -66.52 REMARK 500 ALA A 276 -2.69 -56.13 REMARK 500 GLN A 285 6.17 -69.02 REMARK 500 ASP A 286 -71.56 -70.16 REMARK 500 PRO A 293 -75.89 -52.26 REMARK 500 ASN A 294 -19.68 -33.95 REMARK 500 LEU A 296 -18.40 -44.37 REMARK 500 GLN A 303 -48.72 -22.25 REMARK 500 PRO A 304 -85.50 -74.91 REMARK 500 SER A 305 13.26 -64.20 REMARK 500 HIS A 306 11.38 -147.05 REMARK 500 SER A 308 149.46 161.68 REMARK 500 PRO A 309 -1.96 -59.62 REMARK 500 GLN A 326 72.65 30.39 REMARK 500 LYS A 330 -72.72 -25.86 REMARK 500 LEU A 334 -8.77 -57.94 REMARK 500 ALA A 337 -60.10 -90.11 REMARK 500 GLU A 347 -53.55 -150.74 REMARK 500 ASP A 349 65.78 -159.52 REMARK 500 HIS A 367 34.68 -152.62 REMARK 500 SER A 368 107.91 -170.60 REMARK 500 SER B 39 17.86 58.73 REMARK 500 ILE B 55 -9.30 -56.58 REMARK 500 TYR B 62 44.06 -76.79 REMARK 500 LYS B 63 49.58 -151.08 REMARK 500 PHE B 64 -7.19 -155.88 REMARK 500 HIS B 66 72.20 151.67 REMARK 500 VAL B 68 -161.20 -119.25 REMARK 500 GLN B 74 49.28 -67.24 REMARK 500 ARG B 75 -54.93 -23.89 REMARK 500 LYS B 83 -48.02 -27.63 REMARK 500 THR B 90 -178.70 -62.74 REMARK 500 TYR B 93 62.76 -64.12 REMARK 500 SER B 99 29.21 -163.99 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD2 REMARK 620 2 ASP B 297 OD1 47.8 REMARK 620 3 CYS B 299 SG 103.9 66.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JAN B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NI1 RELATED DB: PDB DBREF 1X81 A 55 369 UNP Q04631 PFTA_RAT 55 369 DBREF 1X81 B 22 418 UNP Q02293 PFTB_RAT 22 418 SEQRES 1 A 315 PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU TYR ARG SEQRES 2 A 315 ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL PRO GLN SEQRES 3 A 315 ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE TYR SER SEQRES 4 A 315 GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG ALA VAL SEQRES 5 A 315 LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE LYS LEU SEQRES 6 A 315 THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN TYR THR SEQRES 7 A 315 VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER LEU GLN SEQRES 8 A 315 LYS ASP LEU GLN GLU GLU MET ASN TYR ILE ILE ALA ILE SEQRES 9 A 315 ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP HIS HIS SEQRES 10 A 315 ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SER GLN SEQRES 11 A 315 GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN ASP ALA SEQRES 12 A 315 LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP VAL ILE SEQRES 13 A 315 GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN TYR VAL SEQRES 14 A 315 ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SER VAL SEQRES 15 A 315 TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR THR GLY SEQRES 16 A 315 TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL GLN TYR SEQRES 17 A 315 THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN GLU SER SEQRES 18 A 315 ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP ARG GLY SEQRES 19 A 315 LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU LEU ASP SEQRES 20 A 315 LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE ALA PHE SEQRES 21 A 315 LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN GLN CYS SEQRES 22 A 315 ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU GLU LEU SEQRES 23 A 315 CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE ARG LYS SEQRES 24 A 315 GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SER LYS SEQRES 25 A 315 HIS SER ARG SEQRES 1 B 397 PRO LEU TYR SER LEU ARG PRO GLU HIS ALA ARG GLU ARG SEQRES 2 B 397 LEU GLN ASP ASP SER VAL GLU THR VAL THR SER ILE GLU SEQRES 3 B 397 GLN ALA LYS VAL GLU GLU LYS ILE GLN GLU VAL PHE SER SEQRES 4 B 397 SER TYR LYS PHE ASN HIS LEU VAL PRO ARG LEU VAL LEU SEQRES 5 B 397 GLN ARG GLU LYS HIS PHE HIS TYR LEU LYS ARG GLY LEU SEQRES 6 B 397 ARG GLN LEU THR ASP ALA TYR GLU CYS LEU ASP ALA SER SEQRES 7 B 397 ARG PRO TRP LEU CYS TYR TRP ILE LEU HIS SER LEU GLU SEQRES 8 B 397 LEU LEU ASP GLU PRO ILE PRO GLN ILE VAL ALA THR ASP SEQRES 9 B 397 VAL CYS GLN PHE LEU GLU LEU CYS GLN SER PRO ASP GLY SEQRES 10 B 397 GLY PHE GLY GLY GLY PRO GLY GLN TYR PRO HIS LEU ALA SEQRES 11 B 397 PRO THR TYR ALA ALA VAL ASN ALA LEU CYS ILE ILE GLY SEQRES 12 B 397 THR GLU GLU ALA TYR ASN VAL ILE ASN ARG GLU LYS LEU SEQRES 13 B 397 LEU GLN TYR LEU TYR SER LEU LYS GLN PRO ASP GLY SER SEQRES 14 B 397 PHE LEU MET HIS VAL GLY GLY GLU VAL ASP VAL ARG SER SEQRES 15 B 397 ALA TYR CYS ALA ALA SER VAL ALA SER LEU THR ASN ILE SEQRES 16 B 397 ILE THR PRO ASP LEU PHE GLU GLY THR ALA GLU TRP ILE SEQRES 17 B 397 ALA ARG CYS GLN ASN TRP GLU GLY GLY ILE GLY GLY VAL SEQRES 18 B 397 PRO GLY MET GLU ALA HIS GLY GLY TYR THR PHE CYS GLY SEQRES 19 B 397 LEU ALA ALA LEU VAL ILE LEU LYS LYS GLU ARG SER LEU SEQRES 20 B 397 ASN LEU LYS SER LEU LEU GLN TRP VAL THR SER ARG GLN SEQRES 21 B 397 MET ARG PHE GLU GLY GLY PHE GLN GLY ARG CYS ASN LYS SEQRES 22 B 397 LEU VAL ASP GLY CYS TYR SER PHE TRP GLN ALA GLY LEU SEQRES 23 B 397 LEU PRO LEU LEU HIS ARG ALA LEU HIS ALA GLN GLY ASP SEQRES 24 B 397 PRO ALA LEU SER MET SER HIS TRP MET PHE HIS GLN GLN SEQRES 25 B 397 ALA LEU GLN GLU TYR ILE LEU MET CYS CYS GLN CYS PRO SEQRES 26 B 397 ALA GLY GLY LEU LEU ASP LYS PRO GLY LYS SER ARG ASP SEQRES 27 B 397 PHE TYR HIS THR CYS TYR CYS LEU SER GLY LEU SER ILE SEQRES 28 B 397 ALA GLN HIS PHE GLY SER GLY ALA MET LEU HIS ASP VAL SEQRES 29 B 397 VAL MET GLY VAL PRO GLU ASN VAL LEU GLN PRO THR HIS SEQRES 30 B 397 PRO VAL TYR ASN ILE GLY PRO ASP LYS VAL ILE GLN ALA SEQRES 31 B 397 THR THR HIS PHE LEU GLN LYS HET ZN B 2 1 HET JAN B 1 34 HETNAM ZN ZINC ION HETNAM JAN 6-[(S)-AMINO(4-CHLOROPHENYL)(1-METHYL-1H-IMIDAZOL-5- HETNAM 2 JAN YL)METHYL]-4-(3-CHLOROPHENYL)-1-METHYLQUINOLIN-2(1H)- HETNAM 3 JAN ONE HETSYN JAN R115777; TIPIFARNIB FORMUL 3 ZN ZN 2+ FORMUL 4 JAN C27 H22 CL2 N4 O HELIX 1 1 SER A 93 ARG A 109 1 17 HELIX 2 2 SER A 113 ASN A 127 1 15 HELIX 3 3 ASN A 130 LEU A 144 1 15 HELIX 4 4 GLN A 149 GLN A 162 1 14 HELIX 5 5 TYR A 166 LYS A 180 1 15 HELIX 6 6 GLU A 185 LEU A 193 1 9 HELIX 7 7 ASN A 199 PHE A 213 1 15 HELIX 8 8 ASN A 218 ASP A 230 1 13 HELIX 9 9 SER A 235 THR A 248 1 14 HELIX 10 10 ASP A 252 LYS A 268 1 17 HELIX 11 11 GLU A 274 ILE A 283 1 10 HELIX 12 12 GLY A 288 PRO A 293 5 6 HELIX 13 13 ASN A 294 GLN A 303 1 10 HELIX 14 14 SER A 308 ASN A 325 1 18 HELIX 15 15 ASN A 329 LYS A 346 1 18 HELIX 16 16 ASP A 349 ILE A 351 5 3 HELIX 17 17 ARG A 352 SER A 368 1 17 HELIX 18 18 LEU B 23 ARG B 34 5 12 HELIX 19 19 THR B 42 TYR B 62 1 21 HELIX 20 20 GLN B 74 LEU B 86 1 13 HELIX 21 21 SER B 99 ASP B 115 1 17 HELIX 22 22 PRO B 119 GLN B 134 1 16 HELIX 23 23 HIS B 149 GLY B 164 1 16 HELIX 24 24 THR B 165 ASN B 170 1 6 HELIX 25 25 ASN B 173 LYS B 185 1 13 HELIX 26 26 ASP B 200 THR B 214 1 15 HELIX 27 27 GLY B 224 ARG B 231 1 8 HELIX 28 28 HIS B 248 LYS B 263 1 16 HELIX 29 29 LYS B 264 LEU B 268 5 5 HELIX 30 30 ASN B 269 GLN B 281 1 13 HELIX 31 31 GLN B 304 GLY B 306 5 3 HELIX 32 32 LEU B 307 GLN B 318 1 12 HELIX 33 33 HIS B 331 CYS B 343 1 13 HELIX 34 34 TYR B 361 GLN B 374 1 14 HELIX 35 35 VAL B 389 VAL B 393 5 5 HELIX 36 36 GLY B 404 LEU B 416 1 13 SHEET 1 A 2 HIS B 375 SER B 378 0 SHEET 2 A 2 MET B 381 ASP B 384 -1 O MET B 381 N SER B 378 LINK ZN ZN B 2 OD2 ASP B 297 1555 1555 2.72 LINK ZN ZN B 2 OD1 ASP B 297 1555 1555 2.69 LINK ZN ZN B 2 SG CYS B 299 1555 1555 2.74 SITE 1 AC1 4 JAN B 1 ASP B 297 CYS B 299 HIS B 362 SITE 1 AC2 6 ZN B 2 TRP B 102 TRP B 106 ASP B 297 SITE 2 AC2 6 ASP B 359 TYR B 361 CRYST1 170.086 170.086 69.133 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005879 0.003394 0.000000 0.00000 SCALE2 0.000000 0.006789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014465 0.00000