HEADER HYDROLASE 18-AUG-04 1X8H TITLE THE MONO-ZINC CARBAPENEMASE CPHA (N220G MUTANT) SHOWS A ZN(II)- NH2 TITLE 2 ARG COORDINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 644; SOURCE 4 GENE: CPHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)(PLYSS); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC20-CPHA KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GARAU,O.DIDEBERG REVDAT 5 10-NOV-21 1X8H 1 REMARK SEQADV LINK REVDAT 4 17-FEB-16 1X8H 1 LINK REVDAT 3 13-JUL-11 1X8H 1 VERSN REVDAT 2 24-FEB-09 1X8H 1 VERSN REVDAT 1 28-DEC-04 1X8H 0 JRNL AUTH G.GARAU,C.BEBRONE,C.ANNE,M.GALLENI,J.M.FRERE,O.DIDEBERG JRNL TITL A METALLO-BETA-LACTAMASE ENZYME IN ACTION: CRYSTAL JRNL TITL 2 STRUCTURES OF THE MONOZINC CARBAPENEMASE CPHA AND ITS JRNL TITL 3 COMPLEX WITH BIAPENEM JRNL REF J.MOL.BIOL. V. 345 785 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15588826 JRNL DOI 10.1016/J.JMB.2004.10.070 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GARAU,I.GARCIA-SAEZ,C.BEBRONE,C.ANNE,P.MERCURI,M.GALLENI, REMARK 1 AUTH 2 J.M.FRERE,O.DIDEBERG REMARK 1 TITL UPDATE OF THE STANDARD NUMBERING SCHEME FOR CLASS B REMARK 1 TITL 2 BETA-LACTAMASES REMARK 1 REF ANTIMICROB.AGENTS CHEMOTHER. V. 48 2347 2004 REMARK 1 REFN ISSN 0066-4804 REMARK 1 PMID 15215079 REMARK 1 DOI 10.1128/AAC.48.7.2347-2349.2004 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.CARFI,S.PARES,E.DUEE,M.GALLENI,C.DUEZ,J.M.FRERE,O.DIDEBERG REMARK 1 TITL THE 3-D STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM REMARK 1 TITL 2 BACILLUS CEREUS REVEALS A NEW TYPE OF PROTEIN FOLD REMARK 1 REF EMBO J. V. 14 4914 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 7588620 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.AOKI,K.IWAIDA,N.HANAMOTO,M.SHIRO,E.KIMURA REMARK 1 TITL GUANIDINE IS A ZN(2+)-BINDING LIGAND AT NEUTRAL PH IN REMARK 1 TITL 2 AQUEOUS SOLUTION REMARK 1 REF J.AM.CHEM.SOC. V. 124 5256 2002 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 11996552 REMARK 1 DOI 10.1021/JA020029Y REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 30092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1400 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.1860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1863 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1682 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2511 ; 1.364 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3931 ; 1.042 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 6.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1971 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 420 ; 0.413 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1907 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 982 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.038 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.105 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.324 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1810 ; 1.299 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ; 2.076 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 701 ; 3.357 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ; 8.379 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8 ; 4.173 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97970 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : 0.07000 REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, AS, PH 6.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.34150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.64300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.34150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.64300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.34150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.64300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.34150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.64300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 SO4 A 3 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 SER A 308 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 90 O HOH A 615 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 106 C PRO A 108 N 0.157 REMARK 500 ARG A 121 C ALA A 122 N 0.282 REMARK 500 ILE A 131 C GLY A 133 N 0.192 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 60 -127.94 57.07 REMARK 500 THR A 86 172.94 73.57 REMARK 500 ALA A 195 -103.72 -157.37 REMARK 500 ASP A 264 -158.05 58.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CO3 A 2 O1 REMARK 620 2 ASP A 120 OD2 102.5 REMARK 620 3 CYS A 221 SG 124.9 108.2 REMARK 620 4 HIS A 263 NE2 101.9 90.7 121.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 ARG A 121 NH2 118.3 REMARK 620 3 CYS A 221 SG 106.0 113.0 REMARK 620 4 HIS A 263 NE2 84.0 103.9 129.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X8G RELATED DB: PDB REMARK 900 THE MONO-ZINC CARBAPENEMASE REMARK 900 RELATED ID: 1X8I RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE ANTIBIOTIC BIAPENEM DBREF 1X8H A 41 307 UNP P26918 BLAB_AERHY 28 254 SEQADV 1X8H GLY A 220 UNP P26918 ASN 192 ENGINEERED MUTATION SEQADV 1X8H SER A 308 UNP P26918 CLONING ARTIFACT SEQRES 1 A 228 ALA GLY MET SER LEU THR GLN VAL SER GLY PRO VAL TYR SEQRES 2 A 228 VAL VAL GLU ASP ASN TYR TYR VAL GLN GLU ASN SER MET SEQRES 3 A 228 VAL TYR PHE GLY ALA LYS GLY VAL THR VAL VAL GLY ALA SEQRES 4 A 228 THR TRP THR PRO ASP THR ALA ARG GLU LEU HIS LYS LEU SEQRES 5 A 228 ILE LYS ARG VAL SER ARG LYS PRO VAL LEU GLU VAL ILE SEQRES 6 A 228 ASN THR ASN TYR HIS THR ASP ARG ALA GLY GLY ASN ALA SEQRES 7 A 228 TYR TRP LYS SER ILE GLY ALA LYS VAL VAL SER THR ARG SEQRES 8 A 228 GLN THR ARG ASP LEU MET LYS SER ASP TRP ALA GLU ILE SEQRES 9 A 228 VAL ALA PHE THR ARG LYS GLY LEU PRO GLU TYR PRO ASP SEQRES 10 A 228 LEU PRO LEU VAL LEU PRO ASN VAL VAL HIS ASP GLY ASP SEQRES 11 A 228 PHE THR LEU GLN GLU GLY LYS VAL ARG ALA PHE TYR ALA SEQRES 12 A 228 GLY PRO ALA HIS THR PRO ASP GLY ILE PHE VAL TYR PHE SEQRES 13 A 228 PRO ASP GLU GLN VAL LEU TYR GLY GLY CYS ILE LEU LYS SEQRES 14 A 228 GLU LYS LEU GLY ASN LEU SER PHE ALA ASP VAL LYS ALA SEQRES 15 A 228 TYR PRO GLN THR LEU GLU ARG LEU LYS ALA MET LYS LEU SEQRES 16 A 228 PRO ILE LYS THR VAL ILE GLY GLY HIS ASP SER PRO LEU SEQRES 17 A 228 HIS GLY PRO GLU LEU ILE ASP HIS TYR GLU ALA LEU ILE SEQRES 18 A 228 LYS ALA ALA PRO GLN SER SER HET ZN A 401 2 HET CO3 A 2 4 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 5 5 HET GOL A 6 6 HET GOL A 7 6 HETNAM ZN ZINC ION HETNAM CO3 CARBONATE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CO3 C O3 2- FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *258(H2 O) HELIX 1 1 THR A 88 ARG A 102 1 14 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 ILE A 131 1 8 HELIX 4 4 ARG A 140 LEU A 161 1 22 HELIX 5 5 GLY A 220 LEU A 223 5 4 HELIX 6 6 LYS A 240 MET A 252 1 13 HELIX 7 7 PRO A 291 ALA A 303 1 13 SHEET 1 A 7 MET A 43 SER A 49 0 SHEET 2 A 7 VAL A 52 ASP A 57 -1 O VAL A 54 N THR A 46 SHEET 3 A 7 GLU A 69 PHE A 75 -1 O SER A 71 N VAL A 55 SHEET 4 A 7 VAL A 80 VAL A 83 -1 O VAL A 83 N MET A 72 SHEET 5 A 7 VAL A 109 ILE A 113 1 O ILE A 113 N VAL A 82 SHEET 6 A 7 LYS A 135 THR A 139 1 O VAL A 137 N VAL A 112 SHEET 7 A 7 VAL A 174 HIS A 176 1 O HIS A 176 N SER A 138 SHEET 1 B 6 PHE A 180 LEU A 182 0 SHEET 2 B 6 VAL A 187 PHE A 190 -1 O ALA A 189 N PHE A 180 SHEET 3 B 6 PHE A 202 PHE A 205 -1 O TYR A 204 N ARG A 188 SHEET 4 B 6 VAL A 216 TYR A 218 -1 O TYR A 218 N VAL A 203 SHEET 5 B 6 THR A 258 ILE A 260 1 O ILE A 260 N LEU A 217 SHEET 6 B 6 LEU A 267 HIS A 289 -1 O HIS A 289 N VAL A 259 LINK O1 CO3 A 2 ZN A ZN A 401 1555 1555 2.00 LINK OD2 ASP A 120 ZN A ZN A 401 1555 1555 1.97 LINK OD2 ASP A 120 ZN B ZN A 401 1555 1555 2.21 LINK NH2BARG A 121 ZN B ZN A 401 1555 1555 2.31 LINK SG CYS A 221 ZN B ZN A 401 1555 1555 2.10 LINK SG CYS A 221 ZN A ZN A 401 1555 1555 2.27 LINK NE2 HIS A 263 ZN A ZN A 401 1555 1555 2.09 LINK NE2 HIS A 263 ZN B ZN A 401 1555 1555 2.11 SITE 1 AC1 5 CO3 A 2 ASP A 120 ARG A 121 CYS A 221 SITE 2 AC1 5 HIS A 263 SITE 1 AC2 9 ASP A 120 HIS A 196 CYS A 221 LYS A 224 SITE 2 AC2 9 HIS A 263 ZN A 401 HOH A 403 HOH A 404 SITE 3 AC2 9 HOH A 410 SITE 1 AC3 4 ARG A 143 LYS A 147 HOH A 560 HOH A 561 SITE 1 AC4 3 ARG A 140 HOH A 496 HOH A 601 SITE 1 AC5 6 LYS A 97 ARG A 102 LYS A 257 HOH A 446 SITE 2 AC5 6 HOH A 451 HOH A 637 SITE 1 AC6 5 HIS A 176 ASP A 177 GLY A 178 ASP A 179 SITE 2 AC6 5 HOH A 642 SITE 1 AC7 6 LEU A 267 HIS A 289 GLY A 290 GLU A 292 SITE 2 AC7 6 HOH A 566 HOH A 645 CRYST1 42.683 101.286 117.820 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008488 0.00000