HEADER TRANSFERASE 18-AUG-04 1X8L TITLE CRYSTAL STRUCTURE OF RETINOL DEHYDRATASE IN COMPLEX WITH ALL-TRANS-4- TITLE 2 OXORETINOL AND INACTIVE COFACTOR PAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPODOPTERA FRUGIPERDA; SOURCE 3 ORGANISM_COMMON: FALL ARMYWORM; SOURCE 4 ORGANISM_TAXID: 7108; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS SULFOTRANSFERASE, DEHYDRATASE, OXORETINOL, RETINOL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,J.BUCK,M.E.NEWCOMER REVDAT 4 23-AUG-23 1X8L 1 REMARK REVDAT 3 20-OCT-21 1X8L 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1X8L 1 VERSN REVDAT 1 08-FEB-05 1X8L 0 JRNL AUTH S.PAKHOMOVA,J.BUCK,M.E.NEWCOMER JRNL TITL THE STRUCTURES OF THE UNIQUE SULFOTRANSFERASE RETINOL JRNL TITL 2 DEHYDRATASE WITH PRODUCT AND INHIBITORS PROVIDE INSIGHT INTO JRNL TITL 3 ENZYME MECHANISM AND INHIBITION. JRNL REF PROTEIN SCI. V. 14 176 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15608121 JRNL DOI 10.1110/PS.041061105 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 40422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2976 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5952 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5255 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8066 ; 1.588 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12253 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 824 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6546 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1282 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1221 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5876 ; 0.233 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3159 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.051 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3435 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5545 ; 1.238 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2517 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2521 ; 2.905 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 349 4 REMARK 3 1 B 8 B 349 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5394 ; 0.20 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5394 ; 0.58 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1FMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% PEG4000, 0.1M NA HEPES, 0.05M REMARK 280 CALCIUM CHLORIDE, 4% GLYCEROL, PH 6.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.59600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 350 REMARK 465 LEU A 351 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 GLU B 350 REMARK 465 LEU B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASN B 348 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 113 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 324 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 113 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 324 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 341 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 223 115.07 -39.62 REMARK 500 ASP A 254 79.34 -159.35 REMARK 500 MET A 295 17.42 59.99 REMARK 500 ARG B 73 31.72 70.49 REMARK 500 ASN B 88 30.49 -99.63 REMARK 500 ASP B 254 73.36 -152.85 REMARK 500 MET B 295 17.68 59.78 REMARK 500 ARG B 312 -76.07 -106.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 O REMARK 620 2 ASN A 121 OD1 72.0 REMARK 620 3 ASP A 122 OD1 76.7 104.4 REMARK 620 4 HOH A1243 O 133.2 94.8 63.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1103 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 316 O REMARK 620 2 CYS A 318 N 65.1 REMARK 620 3 CYS A 318 SG 105.0 73.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 O REMARK 620 2 ASN B 121 OD1 86.9 REMARK 620 3 ASP B 122 OD1 86.5 72.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B2203 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 318 SG REMARK 620 2 CYS B 318 N 67.6 REMARK 620 3 HOH B2357 O 67.9 101.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 2203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXR A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXR B 2202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FML RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH RETINOL REMARK 900 RELATED ID: 1X8J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RETINOL DEHYDRATASE IN COMPLEX WITH REMARK 900 ANDROSTERONE AND INACTIVE COFACTOR PAP REMARK 900 RELATED ID: 1X8K RELATED DB: PDB REMARK 900 THE STRUCTURES OF THE UNIQUE SULFOTRANSFERASE RETINOL DEHYDRATASE REMARK 900 WITH PRODUCT AND INHIBITORS PROVIDE INSIGHT INTO ENZYME MECHANISM REMARK 900 AND INHIBITION. REMARK 999 REMARK 999 SEQUENCE AUTHOR STATES THAT THERE IS AN ERROR IN THE SEQUENCE REMARK 999 DATABASE. PHE142 IS ACTUALLY SER142. DBREF 1X8L A 1 351 UNP Q26490 Q26490_SPOFR 1 351 DBREF 1X8L B 1 351 UNP Q26490 Q26490_SPOFR 1 351 SEQADV 1X8L SER A 142 UNP Q26490 PHE 142 SEE REMARK 999 SEQADV 1X8L SER A 258 UNP Q26490 CYS 258 ENGINEERED MUTATION SEQADV 1X8L SER A 279 UNP Q26490 CYS 279 ENGINEERED MUTATION SEQADV 1X8L SER B 142 UNP Q26490 PHE 142 SEE REMARK 999 SEQADV 1X8L SER B 258 UNP Q26490 CYS 258 ENGINEERED MUTATION SEQADV 1X8L SER B 279 UNP Q26490 CYS 279 ENGINEERED MUTATION SEQRES 1 A 351 MET GLU LYS GLN GLN ASP LEU PRO PHE PRO TYR GLU PHE SEQRES 2 A 351 ARG GLU LEU ASN PRO GLU GLU ASP LYS LEU VAL LYS ALA SEQRES 3 A 351 ASN LEU GLY ALA PHE PRO THR THR TYR VAL LYS LEU GLY SEQRES 4 A 351 PRO LYS GLY TYR MET VAL TYR ARG PRO TYR LEU LYS ASP SEQRES 5 A 351 ALA ALA ASN ILE TYR ASN MET PRO LEU ARG PRO THR ASP SEQRES 6 A 351 VAL PHE VAL ALA SER TYR GLN ARG SER GLY THR THR MET SEQRES 7 A 351 THR GLN GLU LEU VAL TRP LEU ILE GLU ASN ASP LEU ASN SEQRES 8 A 351 PHE GLU ALA ALA LYS THR TYR MET SER LEU ARG TYR ILE SEQRES 9 A 351 TYR LEU ASP GLY PHE MET ILE TYR ASP PRO GLU LYS GLN SEQRES 10 A 351 GLU GLU TYR ASN ASP ILE LEU PRO ASN PRO GLU ASN LEU SEQRES 11 A 351 ASP MET GLU ARG TYR LEU GLY LEU LEU GLU TYR SER SER SEQRES 12 A 351 ARG PRO GLY SER SER LEU LEU ALA ALA VAL PRO PRO THR SEQRES 13 A 351 GLU LYS ARG PHE VAL LYS THR HIS LEU PRO LEU SER LEU SEQRES 14 A 351 MET PRO PRO ASN MET LEU ASP THR VAL LYS MET VAL TYR SEQRES 15 A 351 LEU ALA ARG ASP PRO ARG ASP VAL ALA VAL SER SER PHE SEQRES 16 A 351 HIS HIS ALA ARG LEU LEU TYR LEU LEU ASN LYS GLN SER SEQRES 17 A 351 ASN PHE LYS ASP PHE TRP GLU MET PHE HIS ARG GLY LEU SEQRES 18 A 351 TYR THR LEU THR PRO TYR PHE GLU HIS VAL LYS GLU ALA SEQRES 19 A 351 TRP ALA LYS ARG HIS ASP PRO ASN MET LEU PHE LEU PHE SEQRES 20 A 351 TYR GLU ASP TYR LEU LYS ASP LEU PRO GLY SER ILE ALA SEQRES 21 A 351 ARG ILE ALA ASP PHE LEU GLY LYS LYS LEU SER GLU GLU SEQRES 22 A 351 GLN ILE GLN ARG LEU SER GLU HIS LEU ASN PHE GLU LYS SEQRES 23 A 351 PHE LYS ASN ASN GLY ALA VAL ASN MET GLU ASP TYR ARG SEQRES 24 A 351 GLU ILE GLY ILE LEU ALA ASP GLY GLU HIS PHE ILE ARG SEQRES 25 A 351 LYS GLY LYS ALA GLY CYS TRP ARG ASP TYR PHE ASP GLU SEQRES 26 A 351 GLU MET THR LYS GLN ALA GLU LYS TRP ILE LYS ASP ASN SEQRES 27 A 351 LEU LYS ASP THR ASP LEU ARG TYR PRO ASN MET GLU LEU SEQRES 1 B 351 MET GLU LYS GLN GLN ASP LEU PRO PHE PRO TYR GLU PHE SEQRES 2 B 351 ARG GLU LEU ASN PRO GLU GLU ASP LYS LEU VAL LYS ALA SEQRES 3 B 351 ASN LEU GLY ALA PHE PRO THR THR TYR VAL LYS LEU GLY SEQRES 4 B 351 PRO LYS GLY TYR MET VAL TYR ARG PRO TYR LEU LYS ASP SEQRES 5 B 351 ALA ALA ASN ILE TYR ASN MET PRO LEU ARG PRO THR ASP SEQRES 6 B 351 VAL PHE VAL ALA SER TYR GLN ARG SER GLY THR THR MET SEQRES 7 B 351 THR GLN GLU LEU VAL TRP LEU ILE GLU ASN ASP LEU ASN SEQRES 8 B 351 PHE GLU ALA ALA LYS THR TYR MET SER LEU ARG TYR ILE SEQRES 9 B 351 TYR LEU ASP GLY PHE MET ILE TYR ASP PRO GLU LYS GLN SEQRES 10 B 351 GLU GLU TYR ASN ASP ILE LEU PRO ASN PRO GLU ASN LEU SEQRES 11 B 351 ASP MET GLU ARG TYR LEU GLY LEU LEU GLU TYR SER SER SEQRES 12 B 351 ARG PRO GLY SER SER LEU LEU ALA ALA VAL PRO PRO THR SEQRES 13 B 351 GLU LYS ARG PHE VAL LYS THR HIS LEU PRO LEU SER LEU SEQRES 14 B 351 MET PRO PRO ASN MET LEU ASP THR VAL LYS MET VAL TYR SEQRES 15 B 351 LEU ALA ARG ASP PRO ARG ASP VAL ALA VAL SER SER PHE SEQRES 16 B 351 HIS HIS ALA ARG LEU LEU TYR LEU LEU ASN LYS GLN SER SEQRES 17 B 351 ASN PHE LYS ASP PHE TRP GLU MET PHE HIS ARG GLY LEU SEQRES 18 B 351 TYR THR LEU THR PRO TYR PHE GLU HIS VAL LYS GLU ALA SEQRES 19 B 351 TRP ALA LYS ARG HIS ASP PRO ASN MET LEU PHE LEU PHE SEQRES 20 B 351 TYR GLU ASP TYR LEU LYS ASP LEU PRO GLY SER ILE ALA SEQRES 21 B 351 ARG ILE ALA ASP PHE LEU GLY LYS LYS LEU SER GLU GLU SEQRES 22 B 351 GLN ILE GLN ARG LEU SER GLU HIS LEU ASN PHE GLU LYS SEQRES 23 B 351 PHE LYS ASN ASN GLY ALA VAL ASN MET GLU ASP TYR ARG SEQRES 24 B 351 GLU ILE GLY ILE LEU ALA ASP GLY GLU HIS PHE ILE ARG SEQRES 25 B 351 LYS GLY LYS ALA GLY CYS TRP ARG ASP TYR PHE ASP GLU SEQRES 26 B 351 GLU MET THR LYS GLN ALA GLU LYS TRP ILE LYS ASP ASN SEQRES 27 B 351 LEU LYS ASP THR ASP LEU ARG TYR PRO ASN MET GLU LEU HET HG A1103 1 HET CA A1104 1 HET OXR A1102 22 HET HG B2203 1 HET CA B2204 1 HET A3P B1101 27 HET A3P B2201 27 HET OXR B2202 22 HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION HETNAM OXR 4-OXORETINOL HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE FORMUL 3 HG 2(HG 2+) FORMUL 4 CA 2(CA 2+) FORMUL 5 OXR 2(C20 H28 O2) FORMUL 8 A3P 2(C10 H15 N5 O10 P2) FORMUL 11 HOH *301(H2 O) HELIX 1 1 ASN A 17 GLY A 29 1 13 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASP A 52 ASN A 58 1 7 HELIX 4 4 GLY A 75 ASN A 88 1 14 HELIX 5 5 GLU A 93 THR A 97 5 5 HELIX 6 6 TYR A 98 TYR A 103 1 6 HELIX 7 7 ASP A 107 TYR A 112 5 6 HELIX 8 8 ASP A 113 GLU A 115 5 3 HELIX 9 9 LYS A 116 ASN A 121 1 6 HELIX 10 10 ASP A 122 LEU A 124 5 3 HELIX 11 11 ASN A 126 LEU A 130 5 5 HELIX 12 12 ASP A 131 SER A 143 1 13 HELIX 13 13 PRO A 145 VAL A 153 1 9 HELIX 14 14 PRO A 166 MET A 170 5 5 HELIX 15 15 ASN A 173 THR A 177 5 5 HELIX 16 16 ASP A 186 LEU A 201 1 16 HELIX 17 17 ASN A 209 ARG A 219 1 11 HELIX 18 18 PRO A 226 ALA A 236 1 11 HELIX 19 19 TYR A 248 ASP A 254 1 7 HELIX 20 20 ASP A 254 LEU A 266 1 13 HELIX 21 21 SER A 271 LEU A 282 1 12 HELIX 22 22 ASN A 283 ASN A 289 1 7 HELIX 23 23 GLU A 296 GLY A 302 1 7 HELIX 24 24 GLY A 317 TYR A 322 5 6 HELIX 25 25 ASP A 324 LYS A 340 1 17 HELIX 26 26 ASN B 17 GLY B 29 1 13 HELIX 27 27 TYR B 49 ASN B 58 1 10 HELIX 28 28 GLY B 75 ASN B 88 1 14 HELIX 29 29 GLU B 93 THR B 97 5 5 HELIX 30 30 TYR B 98 TYR B 103 1 6 HELIX 31 31 ASP B 107 TYR B 112 5 6 HELIX 32 32 ASP B 113 LEU B 124 5 12 HELIX 33 33 ASN B 126 LEU B 130 5 5 HELIX 34 34 ASP B 131 ARG B 144 1 14 HELIX 35 35 PRO B 145 ALA B 152 1 8 HELIX 36 36 PRO B 166 MET B 170 5 5 HELIX 37 37 ASN B 173 THR B 177 5 5 HELIX 38 38 ASP B 186 LEU B 201 1 16 HELIX 39 39 ASN B 209 ARG B 219 1 11 HELIX 40 40 PRO B 226 LYS B 237 1 12 HELIX 41 41 TYR B 248 ASP B 254 1 7 HELIX 42 42 ASP B 254 LEU B 266 1 13 HELIX 43 43 SER B 271 LEU B 282 1 12 HELIX 44 44 ASN B 283 ASN B 289 1 7 HELIX 45 45 GLU B 296 GLY B 302 1 7 HELIX 46 46 GLY B 317 TYR B 322 5 6 HELIX 47 47 ASP B 324 LYS B 340 1 17 SHEET 1 A 3 PHE A 13 ARG A 14 0 SHEET 2 A 3 TYR A 35 LEU A 38 -1 O LYS A 37 N ARG A 14 SHEET 3 A 3 TYR A 43 TYR A 46 -1 O VAL A 45 N VAL A 36 SHEET 1 B 5 ILE A 104 TYR A 105 0 SHEET 2 B 5 PHE A 160 THR A 163 1 O LYS A 162 N ILE A 104 SHEET 3 B 5 VAL A 66 SER A 70 1 N VAL A 66 O VAL A 161 SHEET 4 B 5 LYS A 179 ALA A 184 1 O LYS A 179 N PHE A 67 SHEET 5 B 5 MET A 243 PHE A 247 1 O LEU A 246 N TYR A 182 SHEET 1 C 3 PHE B 13 ARG B 14 0 SHEET 2 C 3 TYR B 35 LEU B 38 -1 O LYS B 37 N ARG B 14 SHEET 3 C 3 TYR B 43 TYR B 46 -1 O TYR B 43 N LEU B 38 SHEET 1 D 5 ILE B 104 TYR B 105 0 SHEET 2 D 5 PHE B 160 THR B 163 1 O LYS B 162 N ILE B 104 SHEET 3 D 5 VAL B 66 SER B 70 1 N VAL B 66 O VAL B 161 SHEET 4 D 5 LYS B 179 ALA B 184 1 O LYS B 179 N PHE B 67 SHEET 5 D 5 MET B 243 PHE B 247 1 O LEU B 246 N TYR B 182 LINK O GLU A 118 CA CA A1104 1555 1555 2.48 LINK OD1 ASN A 121 CA CA A1104 1555 1555 3.06 LINK OD1 ASP A 122 CA CA A1104 1555 1555 2.49 LINK O ALA A 316 HG HG A1103 1555 1555 3.51 LINK N CYS A 318 HG HG A1103 1555 1555 3.17 LINK SG CYS A 318 HG HG A1103 1555 1555 2.19 LINK CA CA A1104 O HOH A1243 1555 1555 2.76 LINK O GLU B 118 CA CA B2204 1555 1555 2.37 LINK OD1 ASN B 121 CA CA B2204 1555 1555 2.34 LINK OD1 ASP B 122 CA CA B2204 1555 1555 2.47 LINK SG CYS B 318 HG HG B2203 1555 1555 2.11 LINK N CYS B 318 HG HG B2203 1555 1555 3.37 LINK HG HG B2203 O HOH B2357 1555 1555 3.23 CISPEP 1 THR A 225 PRO A 226 0 5.77 CISPEP 2 THR B 225 PRO B 226 0 7.23 SITE 1 AC1 3 ALA A 316 GLY A 317 CYS A 318 SITE 1 AC2 3 ALA B 316 GLY B 317 CYS B 318 SITE 1 AC3 4 GLU A 118 ASN A 121 ASP A 122 HOH A1243 SITE 1 AC4 3 GLU B 118 ASN B 121 ASP B 122 SITE 1 AC5 20 ARG A 73 SER A 74 GLY A 75 THR A 76 SITE 2 AC5 20 THR A 77 MET A 78 ARG A 185 SER A 193 SITE 3 AC5 20 TYR A 248 LEU A 282 PHE A 284 PHE A 287 SITE 4 AC5 20 ILE A 311 ARG A 312 LYS A 313 GLY A 314 SITE 5 AC5 20 HOH B2205 HOH B2219 HOH B2221 HOH B2337 SITE 1 AC6 19 ARG B 73 SER B 74 GLY B 75 THR B 76 SITE 2 AC6 19 THR B 77 MET B 78 ARG B 185 SER B 193 SITE 3 AC6 19 TYR B 248 LEU B 282 PHE B 284 PHE B 287 SITE 4 AC6 19 ARG B 312 LYS B 313 GLY B 314 HOH B2208 SITE 5 AC6 19 HOH B2209 HOH B2235 HOH B2264 SITE 1 AC7 9 TYR A 105 LEU A 138 LEU A 139 LYS A 162 SITE 2 AC7 9 HIS A 164 HIS A 197 LEU A 201 PHE A 310 SITE 3 AC7 9 HOH B2337 SITE 1 AC8 10 PHE B 31 TYR B 105 TYR B 120 LEU B 138 SITE 2 AC8 10 LEU B 139 SER B 142 LYS B 162 HIS B 164 SITE 3 AC8 10 HIS B 197 HOH B2264 CRYST1 82.506 67.192 85.066 90.00 111.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012120 0.000000 0.004859 0.00000 SCALE2 0.000000 0.014883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012665 0.00000