HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-AUG-04 1XAF TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YFIH FROM SHIGELLA TITLE 2 FLEXNERI 2A STR. 2457T COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF, CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 198215; SOURCE 4 STRAIN: 2457T; SOURCE 5 GENE: YFIH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MCSG, HYPOTHETICAL KEYWDS 2 PROTEIN, YFIH, SHIGELLA FLEXNERI 2A STR. 2457T, PSI, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,I.DEMENTIEVA,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-JUL-11 1XAF 1 VERSN REVDAT 4 24-FEB-09 1XAF 1 VERSN REVDAT 3 20-JUN-06 1XAF 1 JRNL REVDAT 2 18-JAN-05 1XAF 1 AUTHOR KEYWDS REMARK REVDAT 1 31-AUG-04 1XAF 0 JRNL AUTH Y.KIM,N.MALTSEVA,I.DEMENTIEVA,F.COLLART,D.HOLZLE, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN YFIH FROM SHIGELLA JRNL TITL 2 FLEXNERI AT 2 A RESOLUTION. JRNL REF PROTEINS V. 63 1097 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16498617 JRNL DOI 10.1002/PROT.20589 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 27582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : -0.81000 REMARK 3 B23 (A**2) : 0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3803 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5163 ; 1.517 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;35.409 ;23.293 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;16.650 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2944 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1914 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 418 ; 0.223 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.028 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.302 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2479 ; 1.061 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3850 ; 1.505 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 2.617 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 3.619 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB030137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SAGITALLY FOCUSED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 55.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, ZINC ACETATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 587 O HOH B 707 1.66 REMARK 500 O HOH B 585 O HOH B 707 1.77 REMARK 500 O HOH A 587 O HOH A 709 1.81 REMARK 500 O HOH A 641 O HOH A 710 1.89 REMARK 500 O HOH B 638 O HOH B 647 1.99 REMARK 500 O HOH A 632 O HOH B 690 2.01 REMARK 500 O HOH B 528 O HOH B 639 2.05 REMARK 500 N GLY B 14 O HOH B 658 2.05 REMARK 500 O HOH B 712 O HOH B 731 2.05 REMARK 500 O HOH A 592 O HOH A 653 2.09 REMARK 500 O HOH A 556 O HOH A 718 2.09 REMARK 500 OE1 GLU A 81 O HOH A 555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 87 97.70 -69.40 REMARK 500 ALA A 105 58.13 -160.33 REMARK 500 ASP A 106 -42.71 139.70 REMARK 500 HIS A 186 74.23 -153.53 REMARK 500 LYS A 231 -72.83 68.29 REMARK 500 SER B 85 126.86 175.72 REMARK 500 ARG B 87 95.36 -69.09 REMARK 500 ALA B 105 67.52 -154.95 REMARK 500 ASP B 106 -45.50 130.48 REMARK 500 HIS B 186 97.10 -161.25 REMARK 500 LYS B 231 -71.15 66.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 636 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 5.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 107 SG REMARK 620 2 ACT A 512 OXT 113.8 REMARK 620 3 HIS A 71 NE2 110.6 104.0 REMARK 620 4 HIS A 124 NE2 111.2 114.3 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 GLU A 208 OE1 111.1 REMARK 620 3 HOH A 640 O 96.8 94.0 REMARK 620 4 GLU A 147 OE1 92.8 83.6 170.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT A 514 O REMARK 620 2 ACT A 514 OXT 54.6 REMARK 620 3 CYS A 216 SG 121.8 99.8 REMARK 620 4 THR A 219 OG1 99.3 152.6 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HOH A 646 O 103.6 REMARK 620 3 HIS B 39 NE2 80.9 120.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 186 NE2 REMARK 620 2 HIS A 39 NE2 97.1 REMARK 620 3 HOH B 562 O 105.9 99.8 REMARK 620 4 HOH B 657 O 65.1 68.7 56.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 124 NE2 REMARK 620 2 CYS B 107 SG 111.2 REMARK 620 3 ACT B 513 OXT 115.2 108.2 REMARK 620 4 HIS B 71 NE2 104.2 116.3 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 46 NE2 REMARK 620 2 GLU B 208 OE1 92.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT B 515 O REMARK 620 2 ACT B 516 OXT 85.2 REMARK 620 3 CYS B 216 SG 131.7 97.6 REMARK 620 4 ACT B 516 O 102.7 53.3 117.5 REMARK 620 5 THR B 219 OG1 96.1 148.5 104.5 96.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC27896 RELATED DB: TARGETDB DBREF 1XAF A 1 243 UNP Q83K13 Q83K13_SHIFL 1 243 DBREF 1XAF B 1 243 UNP Q83K13 Q83K13_SHIFL 1 243 SEQADV 1XAF SER A -2 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF ASN A -1 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF ALA A 0 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF MSE A 103 UNP Q83K13 MET 103 MODIFIED RESIDUE SEQADV 1XAF MSE A 173 UNP Q83K13 MET 173 MODIFIED RESIDUE SEQADV 1XAF MSE A 236 UNP Q83K13 MET 236 MODIFIED RESIDUE SEQADV 1XAF SER B -2 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF ASN B -1 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF ALA B 0 UNP Q83K13 CLONING ARTIFACT SEQADV 1XAF MSE B 103 UNP Q83K13 MET 103 MODIFIED RESIDUE SEQADV 1XAF MSE B 173 UNP Q83K13 MET 173 MODIFIED RESIDUE SEQADV 1XAF MSE B 236 UNP Q83K13 MET 236 MODIFIED RESIDUE SEQRES 1 A 246 SER ASN ALA MET SER LYS LEU ILE VAL PRO GLN TRP PRO SEQRES 2 A 246 LEU PRO LYS GLY VAL ALA ALA CYS SER SER THR ARG ILE SEQRES 3 A 246 GLY GLY VAL SER LEU PRO PRO TYR ASP SER LEU ASN LEU SEQRES 4 A 246 GLY ALA HIS CYS GLY ASP ASN PRO ASP HIS VAL GLU GLU SEQRES 5 A 246 ASN ARG LYS ARG LEU PHE ALA ALA GLY ASN LEU PRO SER SEQRES 6 A 246 LYS PRO VAL TRP LEU GLU GLN VAL HIS GLY LYS ASP VAL SEQRES 7 A 246 LEU LYS LEU THR GLY GLU PRO TYR ALA SER LYS ARG ALA SEQRES 8 A 246 ASP ALA SER TYR SER ASN THR PRO GLY THR VAL CYS ALA SEQRES 9 A 246 VAL MSE THR ALA ASP CYS LEU PRO VAL LEU PHE CYS ASN SEQRES 10 A 246 ARG ALA GLY THR GLU VAL ALA ALA VAL HIS ALA GLY TRP SEQRES 11 A 246 ARG GLY LEU CYS ALA GLY VAL LEU GLU GLU THR VAL SER SEQRES 12 A 246 CYS PHE ALA ASP LYS PRO GLU ASN ILE LEU ALA TRP LEU SEQRES 13 A 246 GLY PRO ALA ILE GLY PRO ARG ALA PHE GLU VAL GLY ALA SEQRES 14 A 246 GLU VAL ARG GLU ALA PHE MSE ALA VAL ASP ALA LYS ALA SEQRES 15 A 246 SER ALA ALA PHE ILE GLN HIS GLY ASP LYS TYR LEU ALA SEQRES 16 A 246 ASP ILE TYR GLN LEU ALA ARG GLN ARG LEU ALA ASN VAL SEQRES 17 A 246 GLY VAL GLU GLN ILE PHE GLY GLY ASP ARG CYS THR TYR SEQRES 18 A 246 THR GLU ASN GLU THR PHE PHE SER TYR ARG ARG ASP LYS SEQRES 19 A 246 THR THR GLY ARG MSE ALA SER PHE ILE TRP LEU ILE SEQRES 1 B 246 SER ASN ALA MET SER LYS LEU ILE VAL PRO GLN TRP PRO SEQRES 2 B 246 LEU PRO LYS GLY VAL ALA ALA CYS SER SER THR ARG ILE SEQRES 3 B 246 GLY GLY VAL SER LEU PRO PRO TYR ASP SER LEU ASN LEU SEQRES 4 B 246 GLY ALA HIS CYS GLY ASP ASN PRO ASP HIS VAL GLU GLU SEQRES 5 B 246 ASN ARG LYS ARG LEU PHE ALA ALA GLY ASN LEU PRO SER SEQRES 6 B 246 LYS PRO VAL TRP LEU GLU GLN VAL HIS GLY LYS ASP VAL SEQRES 7 B 246 LEU LYS LEU THR GLY GLU PRO TYR ALA SER LYS ARG ALA SEQRES 8 B 246 ASP ALA SER TYR SER ASN THR PRO GLY THR VAL CYS ALA SEQRES 9 B 246 VAL MSE THR ALA ASP CYS LEU PRO VAL LEU PHE CYS ASN SEQRES 10 B 246 ARG ALA GLY THR GLU VAL ALA ALA VAL HIS ALA GLY TRP SEQRES 11 B 246 ARG GLY LEU CYS ALA GLY VAL LEU GLU GLU THR VAL SER SEQRES 12 B 246 CYS PHE ALA ASP LYS PRO GLU ASN ILE LEU ALA TRP LEU SEQRES 13 B 246 GLY PRO ALA ILE GLY PRO ARG ALA PHE GLU VAL GLY ALA SEQRES 14 B 246 GLU VAL ARG GLU ALA PHE MSE ALA VAL ASP ALA LYS ALA SEQRES 15 B 246 SER ALA ALA PHE ILE GLN HIS GLY ASP LYS TYR LEU ALA SEQRES 16 B 246 ASP ILE TYR GLN LEU ALA ARG GLN ARG LEU ALA ASN VAL SEQRES 17 B 246 GLY VAL GLU GLN ILE PHE GLY GLY ASP ARG CYS THR TYR SEQRES 18 B 246 THR GLU ASN GLU THR PHE PHE SER TYR ARG ARG ASP LYS SEQRES 19 B 246 THR THR GLY ARG MSE ALA SER PHE ILE TRP LEU ILE MODRES 1XAF MSE A 103 MET SELENOMETHIONINE MODRES 1XAF MSE A 173 MET SELENOMETHIONINE MODRES 1XAF MSE A 236 MET SELENOMETHIONINE MODRES 1XAF MSE B 103 MET SELENOMETHIONINE MODRES 1XAF MSE B 173 MET SELENOMETHIONINE MODRES 1XAF MSE B 236 MET SELENOMETHIONINE HET MSE A 103 8 HET MSE A 173 8 HET MSE A 236 8 HET MSE B 103 8 HET MSE B 173 8 HET MSE B 236 8 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN B 505 1 HET ZN B 506 1 HET ZN B 507 1 HET ZN A 508 1 HET ACT A 512 4 HET ACT B 513 4 HET ACT A 514 4 HET ACT B 515 4 HET ACT B 516 4 HET GOL A 510 6 HET GOL B 511 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 ZN 8(ZN 2+) FORMUL 11 ACT 5(C2 H3 O2 1-) FORMUL 16 GOL 2(C3 H8 O3) FORMUL 18 HOH *420(H2 O) HELIX 1 1 ASN A 43 ASN A 59 1 17 HELIX 2 2 GLY A 126 ALA A 132 1 7 HELIX 3 3 GLY A 133 SER A 140 1 8 HELIX 4 4 LYS A 145 GLU A 147 5 3 HELIX 5 5 ALA A 166 ASP A 176 1 11 HELIX 6 6 ALA A 177 ALA A 181 5 5 HELIX 7 7 ASP A 193 GLY A 206 1 14 HELIX 8 8 SER A 226 LYS A 231 1 6 HELIX 9 9 ASN B 43 GLY B 58 1 16 HELIX 10 10 GLY B 126 GLY B 133 1 8 HELIX 11 11 GLY B 133 SER B 140 1 8 HELIX 12 12 LYS B 145 GLU B 147 5 3 HELIX 13 13 ALA B 166 ASP B 176 1 11 HELIX 14 14 ALA B 177 ALA B 181 5 5 HELIX 15 15 ASP B 193 VAL B 205 1 13 HELIX 16 16 SER B 226 LYS B 231 1 6 SHEET 1 A 4 LEU A 4 ILE A 5 0 SHEET 2 A 4 VAL A 15 SER A 20 -1 O SER A 19 N ILE A 5 SHEET 3 A 4 MSE A 236 LEU A 242 -1 O PHE A 239 N CYS A 18 SHEET 4 A 4 VAL A 99 THR A 104 -1 N VAL A 102 O SER A 238 SHEET 1 B 6 VAL A 75 LYS A 77 0 SHEET 2 B 6 ALA A 90 SER A 93 1 O ALA A 90 N LEU A 76 SHEET 3 B 6 VAL A 120 ALA A 125 -1 O VAL A 120 N SER A 93 SHEET 4 B 6 LEU A 108 ASN A 114 -1 N LEU A 108 O ALA A 125 SHEET 5 B 6 ILE A 149 LEU A 153 -1 O LEU A 150 N CYS A 113 SHEET 6 B 6 GLN A 209 GLY A 212 1 O PHE A 211 N LEU A 153 SHEET 1 C 3 GLU A 163 GLY A 165 0 SHEET 2 C 3 LYS A 189 ALA A 192 -1 O TYR A 190 N VAL A 164 SHEET 3 C 3 PHE A 183 GLN A 185 -1 N ILE A 184 O LEU A 191 SHEET 1 D 5 LEU B 4 ILE B 5 0 SHEET 2 D 5 VAL B 15 SER B 20 -1 O SER B 19 N ILE B 5 SHEET 3 D 5 MSE B 236 LEU B 242 -1 O PHE B 239 N CYS B 18 SHEET 4 D 5 VAL B 99 THR B 104 -1 N THR B 104 O MSE B 236 SHEET 5 D 5 PRO B 64 VAL B 65 1 N VAL B 65 O VAL B 99 SHEET 1 E 6 VAL B 75 LYS B 77 0 SHEET 2 E 6 ALA B 90 SER B 93 1 O ALA B 90 N LEU B 76 SHEET 3 E 6 VAL B 120 ALA B 125 -1 O VAL B 120 N SER B 93 SHEET 4 E 6 LEU B 108 ASN B 114 -1 N PHE B 112 O ALA B 121 SHEET 5 E 6 ILE B 149 LEU B 153 -1 O LEU B 150 N CYS B 113 SHEET 6 E 6 GLN B 209 GLY B 212 1 O PHE B 211 N LEU B 153 SHEET 1 F 3 GLU B 163 GLY B 165 0 SHEET 2 F 3 LYS B 189 ALA B 192 -1 O TYR B 190 N VAL B 164 SHEET 3 F 3 PHE B 183 HIS B 186 -1 N HIS B 186 O LYS B 189 LINK ND1 HIS A 39 O2 GOL A 510 1555 1555 1.92 LINK C VAL A 102 N MSE A 103 1555 1555 1.32 LINK C MSE A 103 N THR A 104 1555 1555 1.33 LINK C PHE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ALA A 174 1555 1555 1.33 LINK C ARG A 235 N MSE A 236 1555 1555 1.35 LINK C MSE A 236 N ALA A 237 1555 1555 1.33 LINK ZN ZN A 501 SG CYS A 107 1555 1555 2.13 LINK ZN ZN A 501 OXT ACT A 512 1555 1555 2.00 LINK ZN ZN A 501 NE2 HIS A 71 1555 1555 2.19 LINK ZN ZN A 501 NE2 HIS A 124 1555 1555 2.10 LINK ZN ZN A 502 NE2 HIS A 46 1555 1555 2.00 LINK ZN ZN A 503 O ACT A 514 1555 1555 2.10 LINK ZN ZN A 503 OXT ACT A 514 1555 1555 2.55 LINK ZN ZN A 503 SG CYS A 216 1555 1555 2.22 LINK ZN ZN A 503 OG1 THR A 219 1555 1555 1.99 LINK ZN ZN A 504 NE2 HIS A 186 1555 1555 2.24 LINK ZN ZN A 504 O HOH A 646 1555 1555 2.61 LINK ZN ZN A 508 NE2 HIS B 186 1555 1555 2.05 LINK ZN ZN A 508 NE2 HIS A 39 1555 1555 2.05 LINK ZN ZN A 508 O HOH B 562 1555 1555 2.62 LINK ZN ZN A 508 O HOH B 657 1555 1555 2.73 LINK C VAL B 102 N MSE B 103 1555 1555 1.32 LINK C MSE B 103 N THR B 104 1555 1555 1.33 LINK C PHE B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N ALA B 174 1555 1555 1.33 LINK C ARG B 235 N MSE B 236 1555 1555 1.34 LINK C MSE B 236 N ALA B 237 1555 1555 1.33 LINK ZN ZN B 505 NE2 HIS B 124 1555 1555 2.13 LINK ZN ZN B 505 SG CYS B 107 1555 1555 2.12 LINK ZN ZN B 505 OXT ACT B 513 1555 1555 2.00 LINK ZN ZN B 505 NE2 HIS B 71 1555 1555 2.18 LINK ZN ZN B 506 NE2 HIS B 46 1555 1555 2.06 LINK ZN ZN B 507 O ACT B 515 1555 1555 2.12 LINK ZN ZN B 507 OXT ACT B 516 1555 1555 2.56 LINK ZN ZN B 507 SG CYS B 216 1555 1555 2.23 LINK ZN ZN B 507 O ACT B 516 1555 1555 2.12 LINK ZN ZN B 507 OG1 THR B 219 1555 1555 2.04 LINK ZN ZN A 502 OE1 GLU A 208 1555 1565 2.01 LINK ZN ZN A 502 O HOH A 640 1555 1565 1.63 LINK ZN ZN A 502 OE1 GLU A 147 1555 1565 1.84 LINK ZN ZN A 504 NE2 HIS B 39 1555 1455 2.20 LINK ZN ZN B 506 OE1 GLU B 208 1555 1545 1.73 CISPEP 1 PRO A 29 PRO A 30 0 4.92 CISPEP 2 ASP A 32 SER A 33 0 -8.21 CISPEP 3 PRO B 29 PRO B 30 0 -0.31 CISPEP 4 ASP B 32 SER B 33 0 -4.09 SITE 1 AC1 4 HIS A 71 CYS A 107 HIS A 124 ACT A 512 SITE 1 AC2 4 HIS A 46 GLU A 147 GLU A 208 HOH A 640 SITE 1 AC3 4 CYS A 216 THR A 219 ACT A 514 HOH A 538 SITE 1 AC4 4 HIS A 186 HOH A 646 HIS B 39 HOH B 666 SITE 1 AC5 4 HIS B 71 CYS B 107 HIS B 124 ACT B 513 SITE 1 AC6 2 HIS B 46 GLU B 208 SITE 1 AC7 4 CYS B 216 THR B 219 ACT B 515 ACT B 516 SITE 1 AC8 4 HIS A 39 HIS B 186 HOH B 562 HOH B 657 SITE 1 AC9 8 HIS A 71 THR A 104 ALA A 105 ASP A 106 SITE 2 AC9 8 CYS A 107 HIS A 124 ARG A 235 ZN A 501 SITE 1 BC1 6 HIS B 71 THR B 104 ALA B 105 CYS B 107 SITE 2 BC1 6 HIS B 124 ZN B 505 SITE 1 BC2 7 GLY A 158 PRO A 159 ARG A 160 CYS A 216 SITE 2 BC2 7 THR A 219 ZN A 503 HOH A 541 SITE 1 BC3 6 HIS A 39 ARG B 160 ALA B 161 THR B 219 SITE 2 BC3 6 ZN B 507 ACT B 516 SITE 1 BC4 7 GLY B 158 PRO B 159 ARG B 160 CYS B 216 SITE 2 BC4 7 THR B 219 ZN B 507 ACT B 515 SITE 1 BC5 5 GLY A 37 ALA A 38 HIS A 39 ARG A 51 SITE 2 BC5 5 MSE A 103 SITE 1 BC6 8 GLY B 37 ALA B 38 HIS B 39 ARG B 51 SITE 2 BC6 8 MSE B 103 HOH B 649 HOH B 653 HOH B 708 CRYST1 43.874 50.583 55.347 90.32 96.32 90.40 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022793 0.000158 0.002526 0.00000 SCALE2 0.000000 0.019770 0.000127 0.00000 SCALE3 0.000000 0.000000 0.018179 0.00000