HEADER UNKNOWN FUNCTION 27-AUG-04 1XB4 TITLE CRYSTAL STRUCTURE OF SUBUNIT VPS25 OF THE ENDOSOMAL TRAFFICKING TITLE 2 COMPLEX ESCRT-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 23.6 KDA PROTEIN IN YUH1-URA8 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: VPS25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YJR102C, J1957; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WINGED HELIX, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR W.WEISSENHORN,A.K.WERNIMONT REVDAT 4 14-FEB-24 1XB4 1 REMARK REVDAT 3 11-OCT-17 1XB4 1 REMARK REVDAT 2 24-FEB-09 1XB4 1 VERSN REVDAT 1 22-MAR-05 1XB4 0 JRNL AUTH A.K.WERNIMONT,W.WEISSENHORN JRNL TITL CRYSTAL STRUCTURE OF SUBUNIT VPS25 OF THE ENDOSOMAL JRNL TITL 2 TRAFFICKING COMPLEX ESCRT-II. JRNL REF BMC STRUCT.BIOL. V. 4 10 2004 JRNL REFN ESSN 1472-6807 JRNL PMID 15579210 JRNL DOI 10.1186/1472-6807-4-10 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 16404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.327 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 790 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID29; ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : .97914; .931 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18350 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 27.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, GLYCEROL, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 56 REMARK 465 GLU A 57 REMARK 465 LEU A 58 REMARK 465 ASP A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 THR A 63 REMARK 465 ASP A 64 REMARK 465 ASN A 65 REMARK 465 ASP A 66 REMARK 465 ASP A 67 REMARK 465 SER A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 ILE A 71 REMARK 465 SER A 72 REMARK 465 SER A 114 REMARK 465 ASN A 115 REMARK 465 GLU A 156 REMARK 465 GLY A 157 REMARK 465 VAL A 202 REMARK 465 ILE B 53 REMARK 465 ASN B 54 REMARK 465 ASP B 55 REMARK 465 ASN B 56 REMARK 465 GLU B 57 REMARK 465 LEU B 58 REMARK 465 ASP B 59 REMARK 465 SER B 60 REMARK 465 GLY B 61 REMARK 465 SER B 62 REMARK 465 THR B 63 REMARK 465 ASP B 64 REMARK 465 ASN B 65 REMARK 465 ASP B 66 REMARK 465 ASP B 67 REMARK 465 SER B 68 REMARK 465 LYS B 69 REMARK 465 LYS B 70 REMARK 465 ILE B 71 REMARK 465 SER B 72 REMARK 465 LYS B 73 REMARK 465 GLY B 157 REMARK 465 ASP B 158 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 57 REMARK 465 LEU C 58 REMARK 465 ASP C 59 REMARK 465 SER C 60 REMARK 465 GLY C 61 REMARK 465 SER C 62 REMARK 465 THR C 63 REMARK 465 ASP C 64 REMARK 465 ASN C 65 REMARK 465 ASP C 66 REMARK 465 ASP C 67 REMARK 465 SER C 68 REMARK 465 LYS C 69 REMARK 465 LYS C 70 REMARK 465 ILE C 71 REMARK 465 SER C 72 REMARK 465 GLU C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 VAL C 202 REMARK 465 MET D 1 REMARK 465 ASN D 19 REMARK 465 SER D 20 REMARK 465 LEU D 21 REMARK 465 ASP D 55 REMARK 465 ASN D 56 REMARK 465 GLU D 57 REMARK 465 LEU D 58 REMARK 465 ASP D 59 REMARK 465 SER D 60 REMARK 465 GLY D 61 REMARK 465 SER D 62 REMARK 465 THR D 63 REMARK 465 ASP D 64 REMARK 465 ASN D 65 REMARK 465 ASP D 66 REMARK 465 ASP D 67 REMARK 465 SER D 68 REMARK 465 LYS D 69 REMARK 465 LYS D 70 REMARK 465 ILE D 71 REMARK 465 SER D 72 REMARK 465 LYS D 73 REMARK 465 ASP D 107 REMARK 465 GLN D 108 REMARK 465 SER D 109 REMARK 465 GLY D 110 REMARK 465 ARG D 111 REMARK 465 ARG D 112 REMARK 465 SER D 113 REMARK 465 SER D 114 REMARK 465 ASN D 115 REMARK 465 THR D 116 REMARK 465 THR D 117 REMARK 465 THR D 118 REMARK 465 THR D 119 REMARK 465 ARG D 120 REMARK 465 GLU D 140 REMARK 465 ASP D 141 REMARK 465 SER D 142 REMARK 465 GLU D 156 REMARK 465 GLY D 157 REMARK 465 ASP D 158 REMARK 465 GLU D 159 REMARK 465 THR D 160 REMARK 465 ARG D 185 REMARK 465 ALA D 186 REMARK 465 VAL D 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 470 LYS C 73 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN C 115 N THR C 117 2.07 REMARK 500 O ASN B 115 N THR B 117 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 182 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG C 120 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 120 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -66.69 -149.73 REMARK 500 ALA A 3 -91.29 76.96 REMARK 500 ASN A 19 112.55 157.56 REMARK 500 ASP A 107 -135.23 -97.51 REMARK 500 SER A 109 -79.59 176.51 REMARK 500 ARG A 111 103.69 -49.58 REMARK 500 THR A 117 77.85 69.16 REMARK 500 SER A 127 159.41 -49.81 REMARK 500 ASP A 141 12.47 -66.13 REMARK 500 SER A 142 14.50 -143.93 REMARK 500 LYS A 144 8.55 -56.93 REMARK 500 LEU A 145 12.17 -54.27 REMARK 500 ASN A 162 32.19 -173.53 REMARK 500 ASN A 184 49.50 29.43 REMARK 500 ASN A 193 52.19 -96.85 REMARK 500 ASP A 194 45.60 25.45 REMARK 500 ASN B 19 113.32 157.93 REMARK 500 GLN B 108 -10.32 -48.29 REMARK 500 SER B 109 -120.18 -110.45 REMARK 500 SER B 113 162.37 -45.12 REMARK 500 SER B 114 -83.17 -40.41 REMARK 500 THR B 116 27.35 -38.74 REMARK 500 LEU B 124 74.83 -101.79 REMARK 500 ASP B 141 8.99 -65.26 REMARK 500 LYS B 144 8.71 -58.78 REMARK 500 LEU B 145 13.48 -52.78 REMARK 500 ASN B 146 -19.74 -140.77 REMARK 500 SER B 155 -76.59 -90.24 REMARK 500 ASN B 162 28.48 -169.56 REMARK 500 ASN B 184 41.78 32.76 REMARK 500 ASN B 193 53.64 -100.30 REMARK 500 ASP B 194 48.92 23.09 REMARK 500 VAL B 201 53.68 -118.15 REMARK 500 ASN C 19 112.52 157.30 REMARK 500 ASN C 54 -146.93 -146.27 REMARK 500 ASP C 55 74.94 -170.25 REMARK 500 ASP C 107 -167.65 -106.58 REMARK 500 SER C 109 -111.58 -88.02 REMARK 500 SER C 114 -74.46 -51.94 REMARK 500 THR C 116 18.92 -49.89 REMARK 500 THR C 117 76.32 57.47 REMARK 500 SER C 127 157.56 -46.38 REMARK 500 ASP C 141 8.29 -61.87 REMARK 500 LYS C 144 10.98 -57.92 REMARK 500 LEU C 145 10.64 -53.54 REMARK 500 ASN C 162 29.52 -170.51 REMARK 500 ASN C 184 47.38 32.15 REMARK 500 ASN C 193 53.99 -96.94 REMARK 500 ASP C 194 52.36 22.17 REMARK 500 TYR D 8 10.17 -67.01 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1XB4 A 1 202 UNP P47142 VPS25_YEAST 1 202 DBREF 1XB4 B 1 202 UNP P47142 VPS25_YEAST 1 202 DBREF 1XB4 C 1 202 UNP P47142 VPS25_YEAST 1 202 DBREF 1XB4 D 1 202 UNP P47142 VPS25_YEAST 1 202 SEQRES 1 A 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 A 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 A 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 A 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 A 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 A 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 A 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 A 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 A 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 A 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 A 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 A 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 A 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 A 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 A 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 A 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 B 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 B 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 B 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 B 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 B 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 B 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 B 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 B 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 B 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 B 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 B 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 B 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 B 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 B 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 B 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 B 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 C 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 C 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 C 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 C 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 C 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 C 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 C 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 C 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 C 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 C 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 C 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 C 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 C 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 C 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 C 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 C 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 D 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 D 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 D 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 D 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 D 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 D 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 D 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 D 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 D 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 D 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 D 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 D 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 D 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 D 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 D 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 D 202 VAL ILE ALA ILE LYS VAL VAL FORMUL 5 HOH *16(H2 O) HELIX 1 1 PRO A 6 TYR A 14 5 9 HELIX 2 2 ASN A 19 LYS A 41 1 23 HELIX 3 3 SER A 86 GLU A 100 1 15 HELIX 4 4 SER A 127 ASP A 141 1 15 HELIX 5 5 LEU A 151 SER A 155 1 5 HELIX 6 6 PRO A 169 ASP A 182 1 14 HELIX 7 7 ARG A 183 ARG A 185 5 3 HELIX 8 8 PRO B 5 TYR B 14 5 10 HELIX 9 9 ASN B 19 LYS B 41 1 23 HELIX 10 10 SER B 86 GLU B 100 1 15 HELIX 11 11 SER B 127 ASP B 141 1 15 HELIX 12 12 LEU B 151 GLU B 156 1 6 HELIX 13 13 PRO B 169 ASP B 182 1 14 HELIX 14 14 ARG B 183 ARG B 185 5 3 HELIX 15 15 PRO C 5 TYR C 14 5 10 HELIX 16 16 ASN C 19 LYS C 41 1 23 HELIX 17 17 SER C 86 GLU C 100 1 15 HELIX 18 18 SER C 127 ASP C 141 1 15 HELIX 19 19 PRO C 169 ASP C 182 1 14 HELIX 20 20 ARG C 183 ARG C 185 5 3 HELIX 21 21 PHE D 10 THR D 15 5 6 HELIX 22 22 GLN D 25 LYS D 41 1 17 HELIX 23 23 SER D 86 GLU D 100 1 15 HELIX 24 24 SER D 127 PHE D 139 1 13 HELIX 25 25 LEU D 172 ARG D 183 1 12 SHEET 1 A 3 TYR A 45 SER A 47 0 SHEET 2 A 3 ARG A 120 ILE A 123 -1 O TYR A 121 N MET A 46 SHEET 3 A 3 CYS A 103 ILE A 106 -1 N ILE A 106 O ARG A 120 SHEET 1 B 2 ASN A 77 ASN A 78 0 SHEET 2 B 2 ARG A 83 SER A 84 -1 O ARG A 83 N ASN A 78 SHEET 1 C 3 ILE A 149 THR A 150 0 SHEET 2 C 3 VAL A 196 LYS A 200 -1 O ILE A 199 N ILE A 149 SHEET 3 C 3 THR A 187 LYS A 190 -1 N THR A 187 O LYS A 200 SHEET 1 D 3 TYR B 45 SER B 47 0 SHEET 2 D 3 ARG B 120 ILE B 123 -1 O TYR B 121 N MET B 46 SHEET 3 D 3 CYS B 103 ILE B 106 -1 N ILE B 106 O ARG B 120 SHEET 1 E 2 ASN B 77 ASN B 78 0 SHEET 2 E 2 ARG B 83 SER B 84 -1 O ARG B 83 N ASN B 78 SHEET 1 F 3 ILE B 149 THR B 150 0 SHEET 2 F 3 VAL B 196 LYS B 200 -1 O ILE B 199 N ILE B 149 SHEET 3 F 3 THR B 187 LYS B 190 -1 N LEU B 189 O ILE B 197 SHEET 1 G 4 VAL C 52 ILE C 53 0 SHEET 2 G 4 TYR C 45 SER C 47 -1 N TYR C 45 O ILE C 53 SHEET 3 G 4 ARG C 120 ILE C 123 -1 O TYR C 121 N MET C 46 SHEET 4 G 4 CYS C 103 ILE C 106 -1 N LEU C 104 O PHE C 122 SHEET 1 H 2 ASN C 77 ASN C 78 0 SHEET 2 H 2 ARG C 83 SER C 84 -1 O ARG C 83 N ASN C 78 SHEET 1 I 3 VAL C 148 THR C 150 0 SHEET 2 I 3 VAL C 196 LYS C 200 -1 O ILE C 199 N ILE C 149 SHEET 3 I 3 THR C 187 LYS C 190 -1 N THR C 187 O LYS C 200 SHEET 1 J 2 ASN D 77 ASN D 78 0 SHEET 2 J 2 ARG D 83 SER D 84 -1 O ARG D 83 N ASN D 78 SHEET 1 K 2 CYS D 103 LEU D 104 0 SHEET 2 K 2 PHE D 122 ILE D 123 -1 O PHE D 122 N LEU D 104 SHEET 1 L 2 GLN D 147 THR D 150 0 SHEET 2 L 2 ALA D 198 VAL D 201 -1 O ILE D 199 N ILE D 149 CRYST1 53.360 123.660 140.300 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007128 0.00000