HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-SEP-04 1XCC TITLE 1-CYS PEROXIDOXIN FROM PLASMODIUM YOELLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-CYS PEROXIREDOXIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM YOELII; SOURCE 3 ORGANISM_TAXID: 5861; SOURCE 4 GENE: PY04285; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15-TEV; SOURCE 10 OTHER_DETAILS: PET15-TEV IS A MODIFICATION OF PET15B (NOVAGEN) WITH SOURCE 11 THROMBIN SITE REPLACED WITH TEV SITE. KEYWDS UNKNOWN FUNCTION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR M.VEDADI,S.SHARMA,S.HOUSTON,J.LEW,G.WASNEY,M.AMANI,X.XU,J.BRAY, AUTHOR 2 M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,R.HUI,A.BOCHKAREV,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 14-FEB-24 1XCC 1 REMARK REVDAT 5 14-FEB-18 1XCC 1 REMARK REVDAT 4 24-FEB-09 1XCC 1 VERSN REVDAT 3 26-DEC-06 1XCC 1 JRNL REVDAT 2 10-OCT-06 1XCC 1 AUTHOR HEADER KEYWDS REMARK REVDAT 2 2 1 MASTER REVDAT 1 09-NOV-04 1XCC 0 JRNL AUTH M.VEDADI,J.LEW,J.ARTZ,M.AMANI,Y.ZHAO,A.DONG,G.A.WASNEY, JRNL AUTH 2 M.GAO,T.HILLS,S.BROKX,W.QIU,S.SHARMA,A.DIASSITI,Z.ALAM, JRNL AUTH 3 M.MELONE,A.MULICHAK,A.WERNIMONT,J.BRAY,P.LOPPNAU, JRNL AUTH 4 O.PLOTNIKOVA,K.NEWBERRY,E.SUNDARARAJAN,S.HOUSTON,J.WALKER, JRNL AUTH 5 W.TEMPEL,A.BOCHKAREV,I.KOZIERADZKI,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 6 D.ROOS,K.KAIN,R.HUI JRNL TITL GENOME-SCALE PROTEIN EXPRESSION AND STRUCTURAL BIOLOGY OF JRNL TITL 2 PLASMODIUM FALCIPARUM AND RELATED APICOMPLEXAN ORGANISMS. JRNL REF MOL.BIOCHEM.PARASITOL. V. 151 100 2007 JRNL REFN ISSN 0166-6851 JRNL PMID 17125854 JRNL DOI 10.1016/J.MOLBIOPARA.2006.10.011 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2858 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.038 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7212 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9756 ; 1.832 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 867 ; 6.981 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;39.420 ;25.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1338 ;17.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1086 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5318 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3134 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4874 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 399 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4506 ; 1.206 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7101 ; 1.961 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3149 ; 3.114 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2655 ; 4.579 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939, 0.97952, 0.96415 REMARK 200 MONOCHROMATOR : APS 17ID REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.1M BIS-TRIS PH 5.5, REMARK 280 0.2M LITHIUM SULFATE, 5% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.03750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.03750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.19500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.42100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.19500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.42100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.03750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.19500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.42100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.03750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.19500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.42100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 TYR D 3 REMARK 465 HIS D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 222 O HOH A 247 2.17 REMARK 500 O HOH A 300 O HOH C 288 2.18 REMARK 500 O HOH D 263 O HOH D 265 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 184 CB CYS D 184 SG -0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 114 CG - SD - CE ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG C 105 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG C 105 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU D 51 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 30 125.61 -34.41 REMARK 500 ASN B 31 55.18 24.74 REMARK 500 PHE B 71 125.84 -172.45 REMARK 500 CYS B 73 37.01 -87.36 REMARK 500 ASP B 193 -38.44 -39.25 REMARK 500 LYS B 211 17.59 48.52 REMARK 500 PHE C 71 121.91 -170.25 REMARK 500 CYS C 128 -167.16 -79.88 REMARK 500 ASP C 193 -0.95 -57.76 REMARK 500 SER D 17 138.84 -39.34 REMARK 500 PHE D 71 124.31 -171.59 REMARK 500 CYS D 128 -164.76 -76.31 REMARK 500 ASN D 177 14.45 56.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 1XCC A 1 220 UNP Q86SB3 Q86SB3_9APIC 1 220 DBREF 1XCC B 1 220 UNP Q86SB3 Q86SB3_9APIC 1 220 DBREF 1XCC C 1 220 UNP Q86SB3 Q86SB3_9APIC 1 220 DBREF 1XCC D 1 220 UNP Q86SB3 Q86SB3_9APIC 1 220 SEQRES 1 A 220 MET GLY TYR HIS LEU GLY ALA THR PHE PRO ASN PHE THR SEQRES 2 A 220 ALA LYS ALA SER GLY ILE ASP GLY ASP PHE GLU LEU TYR SEQRES 3 A 220 LYS TYR ILE GLU ASN SER TRP ALA ILE LEU PHE SER HIS SEQRES 4 A 220 PRO ASN ASP PHE THR PRO VAL CYS THR THR GLU LEU ALA SEQRES 5 A 220 GLU LEU GLY LYS MET HIS GLU ASP PHE LEU LYS LEU ASN SEQRES 6 A 220 CYS LYS LEU ILE GLY PHE SER CYS ASN SER LYS GLU SER SEQRES 7 A 220 HIS ASP LYS TRP ILE GLU ASP ILE LYS TYR TYR GLY LYS SEQRES 8 A 220 LEU ASN LYS TRP GLU ILE PRO ILE VAL CYS ASP GLU SER SEQRES 9 A 220 ARG GLU LEU ALA ASN LYS LEU LYS ILE MET ASP GLU GLN SEQRES 10 A 220 GLU LYS ASP ILE THR GLY LEU PRO LEU THR CYS ARG CYS SEQRES 11 A 220 LEU PHE PHE ILE SER PRO GLU LYS LYS ILE LYS ALA THR SEQRES 12 A 220 VAL LEU TYR PRO ALA THR THR GLY ARG ASN ALA HIS GLU SEQRES 13 A 220 ILE LEU ARG VAL LEU LYS SER LEU GLN LEU THR TYR THR SEQRES 14 A 220 THR PRO VAL ALA THR PRO VAL ASN TRP ASN GLU GLY ASP SEQRES 15 A 220 LYS CYS CYS VAL ILE PRO THR LEU GLN ASP ASP GLU ILE SEQRES 16 A 220 SER LYS HIS PHE LYS ASN GLU ILE THR LYS VAL GLU MET SEQRES 17 A 220 PRO SER LYS LYS LYS TYR LEU ARG PHE VAL ASN LEU SEQRES 1 B 220 MET GLY TYR HIS LEU GLY ALA THR PHE PRO ASN PHE THR SEQRES 2 B 220 ALA LYS ALA SER GLY ILE ASP GLY ASP PHE GLU LEU TYR SEQRES 3 B 220 LYS TYR ILE GLU ASN SER TRP ALA ILE LEU PHE SER HIS SEQRES 4 B 220 PRO ASN ASP PHE THR PRO VAL CYS THR THR GLU LEU ALA SEQRES 5 B 220 GLU LEU GLY LYS MET HIS GLU ASP PHE LEU LYS LEU ASN SEQRES 6 B 220 CYS LYS LEU ILE GLY PHE SER CYS ASN SER LYS GLU SER SEQRES 7 B 220 HIS ASP LYS TRP ILE GLU ASP ILE LYS TYR TYR GLY LYS SEQRES 8 B 220 LEU ASN LYS TRP GLU ILE PRO ILE VAL CYS ASP GLU SER SEQRES 9 B 220 ARG GLU LEU ALA ASN LYS LEU LYS ILE MET ASP GLU GLN SEQRES 10 B 220 GLU LYS ASP ILE THR GLY LEU PRO LEU THR CYS ARG CYS SEQRES 11 B 220 LEU PHE PHE ILE SER PRO GLU LYS LYS ILE LYS ALA THR SEQRES 12 B 220 VAL LEU TYR PRO ALA THR THR GLY ARG ASN ALA HIS GLU SEQRES 13 B 220 ILE LEU ARG VAL LEU LYS SER LEU GLN LEU THR TYR THR SEQRES 14 B 220 THR PRO VAL ALA THR PRO VAL ASN TRP ASN GLU GLY ASP SEQRES 15 B 220 LYS CYS CYS VAL ILE PRO THR LEU GLN ASP ASP GLU ILE SEQRES 16 B 220 SER LYS HIS PHE LYS ASN GLU ILE THR LYS VAL GLU MET SEQRES 17 B 220 PRO SER LYS LYS LYS TYR LEU ARG PHE VAL ASN LEU SEQRES 1 C 220 MET GLY TYR HIS LEU GLY ALA THR PHE PRO ASN PHE THR SEQRES 2 C 220 ALA LYS ALA SER GLY ILE ASP GLY ASP PHE GLU LEU TYR SEQRES 3 C 220 LYS TYR ILE GLU ASN SER TRP ALA ILE LEU PHE SER HIS SEQRES 4 C 220 PRO ASN ASP PHE THR PRO VAL CYS THR THR GLU LEU ALA SEQRES 5 C 220 GLU LEU GLY LYS MET HIS GLU ASP PHE LEU LYS LEU ASN SEQRES 6 C 220 CYS LYS LEU ILE GLY PHE SER CYS ASN SER LYS GLU SER SEQRES 7 C 220 HIS ASP LYS TRP ILE GLU ASP ILE LYS TYR TYR GLY LYS SEQRES 8 C 220 LEU ASN LYS TRP GLU ILE PRO ILE VAL CYS ASP GLU SER SEQRES 9 C 220 ARG GLU LEU ALA ASN LYS LEU LYS ILE MET ASP GLU GLN SEQRES 10 C 220 GLU LYS ASP ILE THR GLY LEU PRO LEU THR CYS ARG CYS SEQRES 11 C 220 LEU PHE PHE ILE SER PRO GLU LYS LYS ILE LYS ALA THR SEQRES 12 C 220 VAL LEU TYR PRO ALA THR THR GLY ARG ASN ALA HIS GLU SEQRES 13 C 220 ILE LEU ARG VAL LEU LYS SER LEU GLN LEU THR TYR THR SEQRES 14 C 220 THR PRO VAL ALA THR PRO VAL ASN TRP ASN GLU GLY ASP SEQRES 15 C 220 LYS CYS CYS VAL ILE PRO THR LEU GLN ASP ASP GLU ILE SEQRES 16 C 220 SER LYS HIS PHE LYS ASN GLU ILE THR LYS VAL GLU MET SEQRES 17 C 220 PRO SER LYS LYS LYS TYR LEU ARG PHE VAL ASN LEU SEQRES 1 D 220 MET GLY TYR HIS LEU GLY ALA THR PHE PRO ASN PHE THR SEQRES 2 D 220 ALA LYS ALA SER GLY ILE ASP GLY ASP PHE GLU LEU TYR SEQRES 3 D 220 LYS TYR ILE GLU ASN SER TRP ALA ILE LEU PHE SER HIS SEQRES 4 D 220 PRO ASN ASP PHE THR PRO VAL CYS THR THR GLU LEU ALA SEQRES 5 D 220 GLU LEU GLY LYS MET HIS GLU ASP PHE LEU LYS LEU ASN SEQRES 6 D 220 CYS LYS LEU ILE GLY PHE SER CYS ASN SER LYS GLU SER SEQRES 7 D 220 HIS ASP LYS TRP ILE GLU ASP ILE LYS TYR TYR GLY LYS SEQRES 8 D 220 LEU ASN LYS TRP GLU ILE PRO ILE VAL CYS ASP GLU SER SEQRES 9 D 220 ARG GLU LEU ALA ASN LYS LEU LYS ILE MET ASP GLU GLN SEQRES 10 D 220 GLU LYS ASP ILE THR GLY LEU PRO LEU THR CYS ARG CYS SEQRES 11 D 220 LEU PHE PHE ILE SER PRO GLU LYS LYS ILE LYS ALA THR SEQRES 12 D 220 VAL LEU TYR PRO ALA THR THR GLY ARG ASN ALA HIS GLU SEQRES 13 D 220 ILE LEU ARG VAL LEU LYS SER LEU GLN LEU THR TYR THR SEQRES 14 D 220 THR PRO VAL ALA THR PRO VAL ASN TRP ASN GLU GLY ASP SEQRES 15 D 220 LYS CYS CYS VAL ILE PRO THR LEU GLN ASP ASP GLU ILE SEQRES 16 D 220 SER LYS HIS PHE LYS ASN GLU ILE THR LYS VAL GLU MET SEQRES 17 D 220 PRO SER LYS LYS LYS TYR LEU ARG PHE VAL ASN LEU FORMUL 5 HOH *320(H2 O) HELIX 1 1 LEU A 25 ILE A 29 1 5 HELIX 2 2 THR A 44 MET A 57 1 14 HELIX 3 3 MET A 57 LYS A 63 1 7 HELIX 4 4 SER A 75 LYS A 91 1 17 HELIX 5 5 ARG A 105 LYS A 112 1 8 HELIX 6 6 ASN A 153 THR A 170 1 18 HELIX 7 7 GLN A 191 ASP A 193 5 3 HELIX 8 8 GLU A 194 PHE A 199 1 6 HELIX 9 9 LEU B 25 GLU B 30 1 6 HELIX 10 10 THR B 44 MET B 57 1 14 HELIX 11 11 MET B 57 LEU B 64 1 8 HELIX 12 12 SER B 75 GLY B 90 1 16 HELIX 13 13 ARG B 105 LYS B 112 1 8 HELIX 14 14 ASN B 153 THR B 170 1 18 HELIX 15 15 GLN B 191 ILE B 195 5 5 HELIX 16 16 LEU C 25 GLU C 30 1 6 HELIX 17 17 THR C 44 MET C 57 1 14 HELIX 18 18 MET C 57 LYS C 63 1 7 HELIX 19 19 SER C 75 LYS C 91 1 17 HELIX 20 20 ARG C 105 LYS C 112 1 8 HELIX 21 21 ASN C 153 THR C 170 1 18 HELIX 22 22 GLN C 191 ILE C 195 5 5 HELIX 23 23 LEU D 25 ILE D 29 1 5 HELIX 24 24 THR D 44 MET D 57 1 14 HELIX 25 25 MET D 57 LEU D 64 1 8 HELIX 26 26 SER D 75 GLY D 90 1 16 HELIX 27 27 ARG D 105 LEU D 111 1 7 HELIX 28 28 ASN D 153 THR D 170 1 18 HELIX 29 29 GLU D 194 PHE D 199 1 6 SHEET 1 A 2 THR A 13 ALA A 14 0 SHEET 2 A 2 PHE A 23 GLU A 24 -1 O PHE A 23 N ALA A 14 SHEET 1 B10 ILE A 99 CYS A 101 0 SHEET 2 B10 CYS A 66 SER A 72 1 N GLY A 70 O VAL A 100 SHEET 3 B10 TRP A 33 PHE A 37 1 N ILE A 35 O LYS A 67 SHEET 4 B10 ARG A 129 ILE A 134 -1 O ILE A 134 N ALA A 34 SHEET 5 B10 ILE A 140 TYR A 146 -1 O TYR A 146 N ARG A 129 SHEET 6 B10 ILE C 140 TYR C 146 -1 O THR C 143 N LEU A 145 SHEET 7 B10 ARG C 129 ILE C 134 -1 N ARG C 129 O TYR C 146 SHEET 8 B10 TRP C 33 PHE C 37 -1 N ALA C 34 O ILE C 134 SHEET 9 B10 CYS C 66 SER C 72 1 O LYS C 67 N TRP C 33 SHEET 10 B10 ILE C 99 CYS C 101 1 O VAL C 100 N GLY C 70 SHEET 1 C 2 MET A 114 LYS A 119 0 SHEET 2 C 2 PRO A 125 THR A 127 -1 O LEU A 126 N ASP A 115 SHEET 1 D 4 VAL A 172 ALA A 173 0 SHEET 2 D 4 CYS A 184 VAL A 186 -1 O CYS A 185 N ALA A 173 SHEET 3 D 4 ARG A 216 VAL A 218 -1 O VAL A 218 N CYS A 184 SHEET 4 D 4 ILE A 203 LYS A 205 -1 N THR A 204 O PHE A 217 SHEET 1 E 2 THR B 13 ALA B 14 0 SHEET 2 E 2 PHE B 23 GLU B 24 -1 O PHE B 23 N ALA B 14 SHEET 1 F10 ILE B 99 CYS B 101 0 SHEET 2 F10 CYS B 66 SER B 72 1 N GLY B 70 O VAL B 100 SHEET 3 F10 TRP B 33 PHE B 37 1 N ILE B 35 O LYS B 67 SHEET 4 F10 ARG B 129 ILE B 134 -1 O ILE B 134 N ALA B 34 SHEET 5 F10 ILE B 140 TYR B 146 -1 O TYR B 146 N ARG B 129 SHEET 6 F10 ILE D 140 TYR D 146 -1 O THR D 143 N LEU B 145 SHEET 7 F10 ARG D 129 ILE D 134 -1 N ARG D 129 O TYR D 146 SHEET 8 F10 TRP D 33 PHE D 37 -1 N ALA D 34 O ILE D 134 SHEET 9 F10 CYS D 66 SER D 72 1 O ILE D 69 N PHE D 37 SHEET 10 F10 ILE D 99 CYS D 101 1 O VAL D 100 N GLY D 70 SHEET 1 G 2 MET B 114 LYS B 119 0 SHEET 2 G 2 PRO B 125 THR B 127 -1 O LEU B 126 N ASP B 115 SHEET 1 H 4 VAL B 172 ALA B 173 0 SHEET 2 H 4 CYS B 184 VAL B 186 -1 O CYS B 185 N ALA B 173 SHEET 3 H 4 ARG B 216 VAL B 218 -1 O VAL B 218 N CYS B 184 SHEET 4 H 4 ILE B 203 LYS B 205 -1 N THR B 204 O PHE B 217 SHEET 1 I 2 THR C 13 ALA C 14 0 SHEET 2 I 2 PHE C 23 GLU C 24 -1 O PHE C 23 N ALA C 14 SHEET 1 J 2 MET C 114 LYS C 119 0 SHEET 2 J 2 PRO C 125 THR C 127 -1 O LEU C 126 N ASP C 115 SHEET 1 K 4 VAL C 172 ALA C 173 0 SHEET 2 K 4 CYS C 184 VAL C 186 -1 O CYS C 185 N ALA C 173 SHEET 3 K 4 ARG C 216 VAL C 218 -1 O VAL C 218 N CYS C 184 SHEET 4 K 4 ILE C 203 LYS C 205 -1 N THR C 204 O PHE C 217 SHEET 1 L 2 THR D 13 ALA D 14 0 SHEET 2 L 2 PHE D 23 GLU D 24 -1 O PHE D 23 N ALA D 14 SHEET 1 M 2 MET D 114 LYS D 119 0 SHEET 2 M 2 PRO D 125 THR D 127 -1 O LEU D 126 N ASP D 115 SHEET 1 N 4 VAL D 172 ALA D 173 0 SHEET 2 N 4 CYS D 184 VAL D 186 -1 O CYS D 185 N ALA D 173 SHEET 3 N 4 ARG D 216 VAL D 218 -1 O VAL D 218 N CYS D 184 SHEET 4 N 4 THR D 204 LYS D 205 -1 N THR D 204 O PHE D 217 CRYST1 90.390 156.842 178.075 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005616 0.00000