data_1XCE # _entry.id 1XCE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XCE pdb_00001xce 10.2210/pdb1xce/pdb RCSB RCSB030199 ? ? WWPDB D_1000030199 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-06-06 5 'Structure model' 1 4 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Experimental preparation' 7 4 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_caveat 2 4 'Structure model' ndb_struct_conf_na 3 4 'Structure model' ndb_struct_na_base_pair 4 4 'Structure model' ndb_struct_na_base_pair_step 5 4 'Structure model' pdbx_entity_src_syn 6 4 'Structure model' pdbx_nmr_exptl_sample_conditions 7 4 'Structure model' pdbx_struct_assembly 8 4 'Structure model' pdbx_struct_assembly_prop 9 4 'Structure model' pdbx_struct_oper_list 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 3 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 4 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 ;DG A 4 HAS WRONG CHIRALITY AT ATOM C4' ; 2 ;DG B 4 HAS WRONG CHIRALITY AT ATOM C4' ; 3 ;DG C 4 HAS WRONG CHIRALITY AT ATOM C4' ; 4 ;DG D 4 HAS WRONG CHIRALITY AT ATOM C4' ; 5 'chirality error at G4' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCE _pdbx_database_status.recvd_initial_deposition_date 2004-09-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Webba da Silva, M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Experimental Demonstration of T:(G:G:G):T Hexad and T:A:A:T Tetrad Alignments within a DNA Quadruplex Stem' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 3754 _citation.page_last 3764 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15751952 _citation.pdbx_database_id_DOI 10.1021/bi0478190 # _citation_author.citation_id primary _citation_author.name 'Webba da Silva, M.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*GP*CP*GP*GP*TP*TP*GP*GP*AP*T)-3'" _entity.formula_weight 3116.039 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DG)(DT)(DT)(DG)(DG)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can GCGGTTGGAT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DA n 1 10 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in homo sapiens (humans)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DT 10 10 10 DT T A . n B 1 1 DG 1 1 1 DG G B . n B 1 2 DC 2 2 2 DC C B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DT 6 6 6 DT T B . n B 1 7 DG 7 7 7 DG G B . n B 1 8 DG 8 8 8 DG G B . n B 1 9 DA 9 9 9 DA A B . n B 1 10 DT 10 10 10 DT T B . n C 1 1 DG 1 1 1 DG G C . n C 1 2 DC 2 2 2 DC C C . n C 1 3 DG 3 3 3 DG G C . n C 1 4 DG 4 4 4 DG G C . n C 1 5 DT 5 5 5 DT T C . n C 1 6 DT 6 6 6 DT T C . n C 1 7 DG 7 7 7 DG G C . n C 1 8 DG 8 8 8 DG G C . n C 1 9 DA 9 9 9 DA A C . n C 1 10 DT 10 10 10 DT T C . n D 1 1 DG 1 1 1 DG G D . n D 1 2 DC 2 2 2 DC C D . n D 1 3 DG 3 3 3 DG G D . n D 1 4 DG 4 4 4 DG G D . n D 1 5 DT 5 5 5 DT T D . n D 1 6 DT 6 6 6 DT T D . n D 1 7 DG 7 7 7 DG G D . n D 1 8 DG 8 8 8 DG G D . n D 1 9 DA 9 9 9 DA A D . n D 1 10 DT 10 10 10 DT T D . n # _exptl.entry_id 1XCE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? _diffrn_radiation.collimation ? _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1XCE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XCE _struct.title 'Helica Structure of DNA by Design: The T(GGGG)T Hexad Alignment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCE _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA Quadruplex, hexad, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XCE _struct_ref.pdbx_db_accession 1XCE _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XCE A 1 ? 10 ? 1XCE 1 ? 10 ? 1 10 2 1 1XCE B 1 ? 10 ? 1XCE 1 ? 10 ? 1 10 3 1 1XCE C 1 ? 10 ? 1XCE 1 ? 10 ? 1 10 4 1 1XCE D 1 ? 10 ? 1XCE 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3920 ? 1 MORE 10 ? 1 'SSA (A^2)' 4160 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 C DC 2 N3 ? ? A DG 1 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 C DC 2 O2 ? ? A DG 1 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 C DC 2 N4 ? ? A DG 1 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 D DC 2 N4 ? ? A DG 1 D DC 2 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog5 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 1 N1 ? ? A DC 2 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 1 O6 ? ? A DC 2 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 1 N2 ? ? A DC 2 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 2 N4 ? ? ? 1_555 D DG 1 O6 ? ? A DC 2 D DG 1 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog9 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DT 6 O2 ? ? A DG 3 A DT 6 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog10 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 7 N2 ? ? A DG 3 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 7 N1 ? ? A DG 3 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 8 N2 ? ? A DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 8 N1 ? ? A DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 5 A DA 9 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 7 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 7 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 8 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 8 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 8 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 8 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DA 9 N6 ? ? A DA 9 B DA 9 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog26 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DA 9 N1 ? ? A DA 9 B DA 9 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog27 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DT 10 O4 ? ? A DT 10 B DT 10 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog28 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DT 10 N3 ? ? A DT 10 B DT 10 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog29 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 1 C DC 2 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog30 hydrog ? ? B DG 1 N1 ? ? ? 1_555 D DC 2 N3 ? ? B DG 1 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 1 N2 ? ? ? 1_555 D DC 2 O2 ? ? B DG 1 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 1 O6 ? ? ? 1_555 D DC 2 N4 ? ? B DG 1 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 2 C DG 1 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog34 hydrog ? ? B DC 2 N3 ? ? ? 1_555 D DG 1 N1 ? ? B DC 2 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DG 1 O6 ? ? B DC 2 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DG 1 N2 ? ? B DC 2 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DT 6 O2 ? ? B DG 3 B DT 6 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog38 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 7 O6 ? ? B DG 3 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 7 N7 ? ? B DG 3 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 7 O6 ? ? B DG 4 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 7 N7 ? ? B DG 4 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 8 O6 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 8 N7 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 5 B DA 9 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog45 hydrog ? ? C DG 3 N2 ? ? ? 1_555 C DT 6 O2 ? ? C DG 3 C DT 6 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog46 hydrog ? ? C DG 3 N1 ? ? ? 1_555 C DG 7 O6 ? ? C DG 3 C DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? C DG 3 N2 ? ? ? 1_555 C DG 7 N7 ? ? C DG 3 C DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? C DG 3 N7 ? ? ? 1_555 D DG 7 N2 ? ? C DG 3 D DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DG 7 N1 ? ? C DG 3 D DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? C DG 3 N7 ? ? ? 1_555 D DG 8 N2 ? ? C DG 3 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DG 8 N1 ? ? C DG 3 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? C DG 4 N1 ? ? ? 1_555 C DG 8 O6 ? ? C DG 4 C DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? C DG 4 N2 ? ? ? 1_555 C DG 8 N7 ? ? C DG 4 C DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? C DG 4 N7 ? ? ? 1_555 D DG 8 N2 ? ? C DG 4 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DG 8 N1 ? ? C DG 4 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? C DT 5 O4 ? ? ? 1_555 C DA 9 N6 ? ? C DT 5 C DA 9 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog57 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DG 3 O6 ? ? C DG 7 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DG 3 N7 ? ? C DG 7 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DG 3 O6 ? ? C DG 8 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DG 3 N7 ? ? C DG 8 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DG 4 O6 ? ? C DG 8 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DG 4 N7 ? ? C DG 8 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DA 9 N6 ? ? C DA 9 D DA 9 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog64 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DA 9 N1 ? ? C DA 9 D DA 9 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog65 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DT 10 O4 ? ? C DT 10 D DT 10 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog66 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DT 10 N3 ? ? C DT 10 D DT 10 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog67 hydrog ? ? D DG 3 N2 ? ? ? 1_555 D DT 6 O2 ? ? D DG 3 D DT 6 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog68 hydrog ? ? D DG 3 N1 ? ? ? 1_555 D DG 7 O6 ? ? D DG 3 D DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog69 hydrog ? ? D DG 3 N2 ? ? ? 1_555 D DG 7 N7 ? ? D DG 3 D DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? D DG 4 N1 ? ? ? 1_555 D DG 8 O6 ? ? D DG 4 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? D DG 4 N2 ? ? ? 1_555 D DG 8 N7 ? ? D DG 4 D DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog72 hydrog ? ? D DT 5 O4 ? ? ? 1_555 D DA 9 N6 ? ? D DT 5 D DA 9 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A DT 6 ? ? "H5'" A DG 7 ? ? 1.37 2 1 "O5'" B DG 1 ? ? "HO5'" C DG 1 ? ? 1.38 3 1 "HO5'" A DG 1 ? ? "O5'" D DG 1 ? ? 1.45 4 1 H3 A DT 10 ? ? O4 B DT 10 ? ? 1.57 5 1 H22 C DG 7 ? ? OP2 D DC 2 ? ? 1.60 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 1.431 1.518 -0.087 0.010 N 2 1 C8 A DG 1 ? ? N9 A DG 1 ? ? 1.313 1.374 -0.061 0.007 N 3 1 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.328 1.367 -0.039 0.006 N 4 1 C8 A DG 3 ? ? N9 A DG 3 ? ? 1.329 1.374 -0.045 0.007 N 5 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.441 1.521 -0.080 0.010 N 6 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.462 1.516 -0.054 0.008 N 7 1 N9 A DG 4 ? ? C4 A DG 4 ? ? 1.428 1.375 0.053 0.008 N 8 1 "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 1.459 1.521 -0.062 0.010 N 9 1 C2 A DT 6 ? ? N3 A DT 6 ? ? 1.427 1.373 0.054 0.008 N 10 1 C5 A DT 6 ? ? C6 A DT 6 ? ? 1.258 1.339 -0.081 0.007 N 11 1 C6 A DT 6 ? ? N1 A DT 6 ? ? 1.247 1.378 -0.131 0.007 N 12 1 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.402 1.496 -0.094 0.006 N 13 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.307 1.374 -0.067 0.007 N 14 1 "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 1.450 1.518 -0.068 0.010 N 15 1 C8 A DG 8 ? ? N9 A DG 8 ? ? 1.307 1.374 -0.067 0.007 N 16 1 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.459 1.516 -0.057 0.008 N 17 1 "C4'" A DT 10 ? ? "C3'" A DT 10 ? ? 1.441 1.521 -0.080 0.010 N 18 1 C5 A DT 10 ? ? C6 A DT 10 ? ? 1.265 1.339 -0.074 0.007 N 19 1 C6 A DT 10 ? ? N1 A DT 10 ? ? 1.326 1.378 -0.052 0.007 N 20 1 C5 B DT 5 ? ? C7 B DT 5 ? ? 1.545 1.496 0.049 0.006 N 21 1 C6 B DT 6 ? ? N1 B DT 6 ? ? 1.322 1.378 -0.056 0.007 N 22 1 "C2'" C DT 6 ? ? "C1'" C DT 6 ? ? 1.457 1.518 -0.061 0.010 N 23 1 C6 C DT 6 ? ? N1 C DT 6 ? ? 1.295 1.378 -0.083 0.007 N 24 1 C6 D DT 6 ? ? N1 D DT 6 ? ? 1.324 1.378 -0.054 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 91.72 102.20 -10.48 0.70 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.37 108.30 4.07 0.30 N 3 1 C5 A DG 1 ? ? N7 A DG 1 ? ? C8 A DG 1 ? ? 99.65 104.30 -4.65 0.50 N 4 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DC 2 ? ? 135.65 119.70 15.95 1.20 Y 5 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 99.44 104.50 -5.06 0.40 N 6 1 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 96.53 102.20 -5.67 0.70 N 7 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.53 105.90 -8.37 0.80 N 8 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.92 108.30 5.62 0.30 N 9 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 123.29 119.90 3.39 0.50 N 10 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 116.56 121.90 -5.34 0.40 N 11 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.59 118.90 3.69 0.60 N 12 1 C5 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 124.89 120.20 4.69 0.70 N 13 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? "O4'" A DG 3 ? ? 116.99 109.80 7.19 1.10 N 14 1 "C1'" A DG 3 ? ? "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 101.82 110.10 -8.28 1.00 N 15 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 97.51 105.90 -8.39 0.80 N 16 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 100.80 108.00 -7.20 0.70 N 17 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 108.74 111.90 -3.16 0.50 N 18 1 C5 A DG 3 ? ? N7 A DG 3 ? ? C8 A DG 3 ? ? 100.98 104.30 -3.32 0.50 N 19 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 116.69 113.10 3.59 0.50 N 20 1 C6 A DG 3 ? ? C5 A DG 3 ? ? N7 A DG 3 ? ? 126.75 130.40 -3.65 0.60 N 21 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 93.79 102.20 -8.41 0.70 N 22 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 93.13 105.90 -12.77 0.80 N 23 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.64 108.30 5.34 0.30 N 24 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.09 128.60 -3.51 0.50 N 25 1 N3 A DG 4 ? ? C4 A DG 4 ? ? N9 A DG 4 ? ? 130.30 126.00 4.30 0.60 N 26 1 C4 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 135.09 126.50 8.59 1.30 N 27 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DT 5 ? ? 109.35 119.70 -10.35 1.20 Y 28 1 P A DT 5 ? ? "O5'" A DT 5 ? ? "C5'" A DT 5 ? ? 103.77 120.90 -17.13 1.60 N 29 1 "C1'" A DT 5 ? ? "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? 103.93 110.10 -6.17 1.00 N 30 1 "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? "C2'" A DT 5 ? ? 96.92 102.20 -5.28 0.70 N 31 1 "C3'" A DT 5 ? ? "C2'" A DT 5 ? ? "C1'" A DT 5 ? ? 92.83 102.40 -9.57 0.80 N 32 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 97.85 105.90 -8.05 0.80 N 33 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 115.02 108.30 6.71 0.30 N 34 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.42 122.90 -4.48 0.60 N 35 1 "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 93.95 104.50 -10.55 0.40 N 36 1 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 96.87 102.20 -5.33 0.70 N 37 1 "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? "C1'" A DT 6 ? ? 111.07 102.50 8.57 1.20 N 38 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 77.44 105.90 -28.46 0.80 N 39 1 N1 A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 95.04 112.60 -17.56 1.90 N 40 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 121.36 108.30 13.06 0.30 N 41 1 C2 A DT 6 ? ? N3 A DT 6 ? ? C4 A DT 6 ? ? 122.67 127.20 -4.53 0.60 N 42 1 N3 A DT 6 ? ? C4 A DT 6 ? ? C5 A DT 6 ? ? 111.05 115.20 -4.15 0.60 N 43 1 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 125.68 118.00 7.68 0.60 N 44 1 N3 A DT 6 ? ? C4 A DT 6 ? ? O4 A DT 6 ? ? 123.95 119.90 4.05 0.60 N 45 1 C4 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 129.50 119.00 10.50 0.60 N 46 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 104.45 122.90 -18.45 0.60 N 47 1 C6 A DT 6 ? ? N1 A DT 6 ? ? "C1'" A DT 6 ? ? 104.85 120.40 -15.55 1.50 N 48 1 C2 A DT 6 ? ? N1 A DT 6 ? ? "C1'" A DT 6 ? ? 132.76 118.20 14.56 1.60 N 49 1 P A DG 7 ? ? "O5'" A DG 7 ? ? "C5'" A DG 7 ? ? 104.84 120.90 -16.06 1.60 N 50 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 96.28 102.20 -5.92 0.70 N 51 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 119.14 108.30 10.84 0.30 N 52 1 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 100.15 104.50 -4.35 0.40 N 53 1 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 96.41 102.40 -5.99 0.80 N 54 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? "C2'" A DG 8 ? ? 100.46 105.90 -5.44 0.80 N 55 1 N9 A DG 8 ? ? "C1'" A DG 8 ? ? "C2'" A DG 8 ? ? 94.03 112.60 -18.57 1.90 N 56 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 118.52 108.30 10.22 0.30 N 57 1 C5 A DG 8 ? ? N7 A DG 8 ? ? C8 A DG 8 ? ? 100.93 104.30 -3.37 0.50 N 58 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.22 113.10 3.12 0.50 N 59 1 N1 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 122.83 116.20 6.63 0.90 N 60 1 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 114.04 119.90 -5.86 0.70 N 61 1 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? "C1'" A DA 9 ? ? 113.49 102.50 10.99 1.20 N 62 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 117.04 108.30 8.74 0.30 N 63 1 "C3'" A DA 9 ? ? "O3'" A DA 9 ? ? P A DT 10 ? ? 127.57 119.70 7.87 1.20 Y 64 1 "O4'" A DT 10 ? ? "C4'" A DT 10 ? ? "C3'" A DT 10 ? ? 98.16 104.50 -6.34 0.40 N 65 1 "C3'" A DT 10 ? ? "C2'" A DT 10 ? ? "C1'" A DT 10 ? ? 96.78 102.40 -5.62 0.80 N 66 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 120.96 108.30 12.66 0.30 N 67 1 N3 A DT 10 ? ? C4 A DT 10 ? ? C5 A DT 10 ? ? 110.99 115.20 -4.21 0.60 N 68 1 C4 A DT 10 ? ? C5 A DT 10 ? ? C6 A DT 10 ? ? 123.42 118.00 5.42 0.60 N 69 1 C4 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 131.87 119.00 12.87 0.60 N 70 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 104.63 122.90 -18.27 0.60 N 71 1 "C4'" B DG 1 ? ? "C3'" B DG 1 ? ? "C2'" B DG 1 ? ? 88.04 102.20 -14.16 0.70 N 72 1 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 139.03 119.70 19.33 1.20 Y 73 1 "O4'" B DC 2 ? ? "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? 102.07 104.50 -2.43 0.40 N 74 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 112.12 108.30 3.82 0.30 N 75 1 C2 B DC 2 ? ? N3 B DC 2 ? ? C4 B DC 2 ? ? 123.18 119.90 3.28 0.50 N 76 1 N3 B DC 2 ? ? C4 B DC 2 ? ? C5 B DC 2 ? ? 118.39 121.90 -3.51 0.40 N 77 1 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P B DG 3 ? ? 107.98 119.70 -11.72 1.20 Y 78 1 "C1'" B DG 3 ? ? "O4'" B DG 3 ? ? "C4'" B DG 3 ? ? 102.39 110.10 -7.71 1.00 N 79 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? "C2'" B DG 3 ? ? 94.69 105.90 -11.21 0.80 N 80 1 "C4'" B DG 4 ? ? "C3'" B DG 4 ? ? "C2'" B DG 4 ? ? 94.80 102.20 -7.40 0.70 N 81 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? "C2'" B DG 4 ? ? 98.50 105.90 -7.40 0.80 N 82 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.56 108.30 5.26 0.30 N 83 1 P B DT 5 ? ? "O5'" B DT 5 ? ? "C5'" B DT 5 ? ? 111.16 120.90 -9.74 1.60 N 84 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 97.16 102.40 -5.24 0.80 N 85 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? "C2'" B DT 5 ? ? 100.06 105.90 -5.84 0.80 N 86 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 113.07 108.30 4.77 0.30 N 87 1 "O4'" B DT 6 ? ? "C4'" B DT 6 ? ? "C3'" B DT 6 ? ? 93.50 104.50 -11.00 0.40 N 88 1 "C1'" B DT 6 ? ? "O4'" B DT 6 ? ? "C4'" B DT 6 ? ? 99.00 110.10 -11.10 1.00 N 89 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? "C2'" B DT 6 ? ? 92.36 105.90 -13.54 0.80 N 90 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1 B DT 6 ? ? 115.47 108.30 7.17 0.30 N 91 1 P B DG 7 ? ? "O5'" B DG 7 ? ? "C5'" B DG 7 ? ? 110.36 120.90 -10.54 1.60 N 92 1 "C4'" B DG 7 ? ? "C3'" B DG 7 ? ? "C2'" B DG 7 ? ? 97.53 102.20 -4.67 0.70 N 93 1 "C3'" B DG 7 ? ? "C2'" B DG 7 ? ? "C1'" B DG 7 ? ? 97.00 102.40 -5.40 0.80 N 94 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 115.10 108.30 6.80 0.30 N 95 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 97.43 102.20 -4.77 0.70 N 96 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 97.33 102.40 -5.07 0.80 N 97 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 115.90 108.30 7.60 0.30 N 98 1 "C4'" B DA 9 ? ? "C3'" B DA 9 ? ? "C2'" B DA 9 ? ? 97.85 102.20 -4.35 0.70 N 99 1 "C3'" B DA 9 ? ? "C2'" B DA 9 ? ? "C1'" B DA 9 ? ? 95.27 102.40 -7.13 0.80 N 100 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 110.63 108.30 2.33 0.30 N 101 1 "O4'" B DT 10 ? ? "C4'" B DT 10 ? ? "C3'" B DT 10 ? ? 96.01 104.50 -8.49 0.40 N 102 1 "C4'" B DT 10 ? ? "C3'" B DT 10 ? ? "C2'" B DT 10 ? ? 95.12 102.20 -7.08 0.70 N 103 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 115.98 108.30 7.68 0.30 N 104 1 C4 B DT 10 ? ? C5 B DT 10 ? ? C6 B DT 10 ? ? 121.96 118.00 3.96 0.60 N 105 1 "C5'" C DG 1 ? ? "C4'" C DG 1 ? ? "O4'" C DG 1 ? ? 117.13 109.80 7.33 1.10 N 106 1 "C4'" C DG 1 ? ? "C3'" C DG 1 ? ? "C2'" C DG 1 ? ? 90.47 102.20 -11.73 0.70 N 107 1 "C3'" C DG 1 ? ? "C2'" C DG 1 ? ? "C1'" C DG 1 ? ? 96.97 102.40 -5.43 0.80 N 108 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 103.08 108.00 -4.92 0.70 N 109 1 N1 C DG 1 ? ? C6 C DG 1 ? ? O6 C DG 1 ? ? 123.77 119.90 3.87 0.60 N 110 1 C5 C DG 1 ? ? C6 C DG 1 ? ? O6 C DG 1 ? ? 121.86 128.60 -6.74 0.60 N 111 1 "C3'" C DG 1 ? ? "O3'" C DG 1 ? ? P C DC 2 ? ? 136.73 119.70 17.03 1.20 Y 112 1 "O4'" C DC 2 ? ? "C4'" C DC 2 ? ? "C3'" C DC 2 ? ? 102.05 104.50 -2.45 0.40 N 113 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 113.32 108.30 5.02 0.30 N 114 1 C2 C DC 2 ? ? N3 C DC 2 ? ? C4 C DC 2 ? ? 123.41 119.90 3.51 0.50 N 115 1 N3 C DC 2 ? ? C4 C DC 2 ? ? C5 C DC 2 ? ? 117.91 121.90 -3.99 0.40 N 116 1 "C3'" C DC 2 ? ? "O3'" C DC 2 ? ? P C DG 3 ? ? 109.80 119.70 -9.90 1.20 Y 117 1 "C1'" C DG 3 ? ? "O4'" C DG 3 ? ? "C4'" C DG 3 ? ? 100.39 110.10 -9.71 1.00 N 118 1 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? "C2'" C DG 3 ? ? 98.42 105.90 -7.48 0.80 N 119 1 "O4'" C DG 4 ? ? "C4'" C DG 4 ? ? "C3'" C DG 4 ? ? 101.21 104.50 -3.29 0.40 N 120 1 "C4'" C DG 4 ? ? "C3'" C DG 4 ? ? "C2'" C DG 4 ? ? 96.69 102.20 -5.51 0.70 N 121 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? "C2'" C DG 4 ? ? 101.01 105.90 -4.89 0.80 N 122 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 112.01 108.30 3.71 0.30 N 123 1 P C DT 5 ? ? "O5'" C DT 5 ? ? "C5'" C DT 5 ? ? 111.09 120.90 -9.81 1.60 N 124 1 "C3'" C DT 5 ? ? "C2'" C DT 5 ? ? "C1'" C DT 5 ? ? 94.46 102.40 -7.94 0.80 N 125 1 "O4'" C DT 5 ? ? "C1'" C DT 5 ? ? "C2'" C DT 5 ? ? 100.31 105.90 -5.59 0.80 N 126 1 "O4'" C DT 5 ? ? "C1'" C DT 5 ? ? N1 C DT 5 ? ? 113.88 108.30 5.58 0.30 N 127 1 "O4'" C DT 6 ? ? "C4'" C DT 6 ? ? "C3'" C DT 6 ? ? 93.87 104.50 -10.63 0.40 N 128 1 "C1'" C DT 6 ? ? "O4'" C DT 6 ? ? "C4'" C DT 6 ? ? 97.63 110.10 -12.47 1.00 N 129 1 "C3'" C DT 6 ? ? "C2'" C DT 6 ? ? "C1'" C DT 6 ? ? 96.81 102.40 -5.59 0.80 N 130 1 "O4'" C DT 6 ? ? "C1'" C DT 6 ? ? N1 C DT 6 ? ? 120.44 108.30 12.14 0.30 N 131 1 C6 C DT 6 ? ? N1 C DT 6 ? ? "C1'" C DT 6 ? ? 109.63 120.40 -10.77 1.50 N 132 1 C2 C DT 6 ? ? N1 C DT 6 ? ? "C1'" C DT 6 ? ? 128.87 118.20 10.67 1.60 N 133 1 P C DG 7 ? ? "O5'" C DG 7 ? ? "C5'" C DG 7 ? ? 109.52 120.90 -11.38 1.60 N 134 1 "C4'" C DG 7 ? ? "C3'" C DG 7 ? ? "C2'" C DG 7 ? ? 97.17 102.20 -5.03 0.70 N 135 1 "C3'" C DG 7 ? ? "C2'" C DG 7 ? ? "C1'" C DG 7 ? ? 97.55 102.40 -4.85 0.80 N 136 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 115.50 108.30 7.20 0.30 N 137 1 "C4'" C DG 8 ? ? "C3'" C DG 8 ? ? "C2'" C DG 8 ? ? 97.24 102.20 -4.96 0.70 N 138 1 "C3'" C DG 8 ? ? "C2'" C DG 8 ? ? "C1'" C DG 8 ? ? 97.03 102.40 -5.37 0.80 N 139 1 "O4'" C DG 8 ? ? "C1'" C DG 8 ? ? N9 C DG 8 ? ? 117.02 108.30 8.72 0.30 N 140 1 "C4'" C DA 9 ? ? "C3'" C DA 9 ? ? "C2'" C DA 9 ? ? 97.52 102.20 -4.68 0.70 N 141 1 "C3'" C DA 9 ? ? "C2'" C DA 9 ? ? "C1'" C DA 9 ? ? 94.43 102.40 -7.97 0.80 N 142 1 "O4'" C DA 9 ? ? "C1'" C DA 9 ? ? N9 C DA 9 ? ? 112.65 108.30 4.35 0.30 N 143 1 "O4'" C DT 10 ? ? "C4'" C DT 10 ? ? "C3'" C DT 10 ? ? 99.71 104.50 -4.79 0.40 N 144 1 "C4'" C DT 10 ? ? "C3'" C DT 10 ? ? "C2'" C DT 10 ? ? 96.11 102.20 -6.09 0.70 N 145 1 "O4'" C DT 10 ? ? "C1'" C DT 10 ? ? N1 C DT 10 ? ? 113.67 108.30 5.37 0.30 N 146 1 C4 C DT 10 ? ? C5 C DT 10 ? ? C6 C DT 10 ? ? 122.10 118.00 4.10 0.60 N 147 1 C6 C DT 10 ? ? C5 C DT 10 ? ? C7 C DT 10 ? ? 119.06 122.90 -3.84 0.60 N 148 1 "C4'" D DG 1 ? ? "C3'" D DG 1 ? ? "C2'" D DG 1 ? ? 90.42 102.20 -11.78 0.70 N 149 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.56 108.30 2.26 0.30 N 150 1 C5 D DG 1 ? ? C6 D DG 1 ? ? O6 D DG 1 ? ? 124.53 128.60 -4.07 0.60 N 151 1 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 135.61 119.70 15.91 1.20 Y 152 1 C2 D DC 2 ? ? N3 D DC 2 ? ? C4 D DC 2 ? ? 123.68 119.90 3.78 0.50 N 153 1 N3 D DC 2 ? ? C4 D DC 2 ? ? C5 D DC 2 ? ? 117.90 121.90 -4.00 0.40 N 154 1 "C3'" D DC 2 ? ? "O3'" D DC 2 ? ? P D DG 3 ? ? 110.03 119.70 -9.67 1.20 Y 155 1 "C1'" D DG 3 ? ? "O4'" D DG 3 ? ? "C4'" D DG 3 ? ? 102.96 110.10 -7.14 1.00 N 156 1 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? "C2'" D DG 3 ? ? 95.17 105.90 -10.73 0.80 N 157 1 "C4'" D DG 4 ? ? "C3'" D DG 4 ? ? "C2'" D DG 4 ? ? 96.93 102.20 -5.27 0.70 N 158 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? "C2'" D DG 4 ? ? 101.07 105.90 -4.83 0.80 N 159 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 112.33 108.30 4.03 0.30 N 160 1 P D DT 5 ? ? "O5'" D DT 5 ? ? "C5'" D DT 5 ? ? 111.05 120.90 -9.85 1.60 N 161 1 "C3'" D DT 5 ? ? "C2'" D DT 5 ? ? "C1'" D DT 5 ? ? 96.08 102.40 -6.32 0.80 N 162 1 "O4'" D DT 5 ? ? "C1'" D DT 5 ? ? "C2'" D DT 5 ? ? 100.35 105.90 -5.55 0.80 N 163 1 "O4'" D DT 5 ? ? "C1'" D DT 5 ? ? N1 D DT 5 ? ? 112.71 108.30 4.41 0.30 N 164 1 "O4'" D DT 6 ? ? "C4'" D DT 6 ? ? "C3'" D DT 6 ? ? 92.78 104.50 -11.72 0.40 N 165 1 "C5'" D DT 6 ? ? "C4'" D DT 6 ? ? "O4'" D DT 6 ? ? 116.47 109.80 6.67 1.10 N 166 1 "C1'" D DT 6 ? ? "O4'" D DT 6 ? ? "C4'" D DT 6 ? ? 99.05 110.10 -11.05 1.00 N 167 1 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? "C2'" D DT 6 ? ? 91.78 105.90 -14.12 0.80 N 168 1 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 116.69 108.30 8.39 0.30 N 169 1 P D DG 7 ? ? "O5'" D DG 7 ? ? "C5'" D DG 7 ? ? 110.18 120.90 -10.72 1.60 N 170 1 "C4'" D DG 7 ? ? "C3'" D DG 7 ? ? "C2'" D DG 7 ? ? 97.46 102.20 -4.74 0.70 N 171 1 "C3'" D DG 7 ? ? "C2'" D DG 7 ? ? "C1'" D DG 7 ? ? 97.14 102.40 -5.26 0.80 N 172 1 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 113.81 108.30 5.51 0.30 N 173 1 "C4'" D DG 8 ? ? "C3'" D DG 8 ? ? "C2'" D DG 8 ? ? 97.20 102.20 -5.00 0.70 N 174 1 "C3'" D DG 8 ? ? "C2'" D DG 8 ? ? "C1'" D DG 8 ? ? 97.07 102.40 -5.33 0.80 N 175 1 "O4'" D DG 8 ? ? "C1'" D DG 8 ? ? N9 D DG 8 ? ? 116.65 108.30 8.35 0.30 N 176 1 "C4'" D DA 9 ? ? "C3'" D DA 9 ? ? "C2'" D DA 9 ? ? 97.65 102.20 -4.55 0.70 N 177 1 "C3'" D DA 9 ? ? "C2'" D DA 9 ? ? "C1'" D DA 9 ? ? 94.21 102.40 -8.19 0.80 N 178 1 "O4'" D DA 9 ? ? "C1'" D DA 9 ? ? N9 D DA 9 ? ? 112.80 108.30 4.50 0.30 N 179 1 "O4'" D DT 10 ? ? "C4'" D DT 10 ? ? "C3'" D DT 10 ? ? 99.61 104.50 -4.89 0.40 N 180 1 "C4'" D DT 10 ? ? "C3'" D DT 10 ? ? "C2'" D DT 10 ? ? 96.08 102.20 -6.12 0.70 N 181 1 "O4'" D DT 10 ? ? "C1'" D DT 10 ? ? N1 D DT 10 ? ? 113.70 108.30 5.40 0.30 N 182 1 C4 D DT 10 ? ? C5 D DT 10 ? ? C6 D DT 10 ? ? 122.07 118.00 4.07 0.60 N 183 1 C6 D DT 10 ? ? C5 D DT 10 ? ? C7 D DT 10 ? ? 119.08 122.90 -3.82 0.60 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? A DG 4 ? 'WRONG HAND' . 2 1 "C4'" ? B DG 4 ? 'WRONG HAND' . 3 1 "C4'" ? C DG 4 ? 'WRONG HAND' . 4 1 "C4'" ? D DG 4 ? 'WRONG HAND' . # _pdbx_nmr_ensemble.entry_id 1XCE _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XCE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'synthesized by solid phase phosphoramidite methods, phosphate buffer pH 6.8, H2O' _pdbx_nmr_sample_details.solvent_system H2O _pdbx_nmr_sample_details.label ? _pdbx_nmr_sample_details.type ? _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 1 293 normal 6.8 '100 mM NaCl' ? K ? ? ? 2 273 normal 6.8 '100 mM NaCl' ? K ? ? ? # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D NOESY' 4 1 2 '1H,15N HSQC' 5 1 1 '31P,1H HETCOR' 6 1 2 JR-NOESY # _pdbx_nmr_details.entry_id 1XCE _pdbx_nmr_details.text 'The structure was determine using standard and non-standard homo- and heteronuclear NMR techniques' # _pdbx_nmr_refine.entry_id 1XCE _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 2.1 refinement Brunger 1 XPLOR-NIH 2.9.7 refinement Brunger/Schwieters 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XCE 'double helix' 1XCE 'parallel strands' 1XCE 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 10 1_555 A DT 10 1_555 1.878 -2.485 0.157 -3.192 11.089 167.231 1 B_DT10:DT10_A B 10 ? A 10 ? 12 2 1 A DA 9 1_555 B DA 9 1_555 1.345 1.026 0.160 -3.019 -1.496 -173.897 2 A_DA9:DA9_B A 9 ? B 9 ? 1 2 1 A DG 4 1_555 B DG 8 1_555 -1.198 -3.609 -0.019 1.294 -0.027 88.889 3 A_DG4:DG8_B A 4 ? B 8 ? 6 3 1 B DG 7 1_555 A DG 3 1_555 2.493 2.721 0.136 -16.409 4.281 -89.834 4 B_DG7:DG3_A B 7 ? A 3 ? 6 3 1 B DG 3 1_555 A DG 7 1_555 -2.350 -2.776 0.144 19.078 -2.857 86.970 5 B_DG3:DG7_A B 3 ? A 7 ? 6 3 1 B DG 4 1_555 A DG 8 1_555 -1.201 -3.898 0.040 1.239 2.403 80.678 6 B_DG4:DG8_A B 4 ? A 8 ? 6 3 1 D DT 10 1_555 C DT 10 1_555 -1.822 2.710 -0.001 4.846 -24.356 -179.969 7 D_DT10:DT10_C D 10 ? C 10 ? 12 2 1 C DA 9 1_555 D DA 9 1_555 -1.289 -1.034 -0.008 -0.103 3.469 179.955 8 C_DA9:DA9_D C 9 ? D 9 ? 1 2 1 D DG 4 1_555 D DG 8 1_555 1.195 3.548 -0.012 -0.178 -0.879 -96.207 9 D_DG4:DG8_D D 4 ? D 8 ? 6 3 1 D DG 7 1_555 D DG 3 1_555 -2.369 -2.702 0.255 12.193 -2.914 89.857 10 D_DG7:DG3_D D 7 ? D 3 ? 6 3 1 C DG 3 1_555 C DG 7 1_555 2.389 2.761 0.032 -14.572 -1.562 -86.507 11 C_DG3:DG7_C C 3 ? C 7 ? 6 3 1 C DG 4 1_555 C DG 8 1_555 1.217 3.553 -0.035 0.462 -0.748 -94.346 12 C_DG4:DG8_C C 4 ? C 8 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 10 1_555 A DT 10 1_555 A DA 9 1_555 B DA 9 1_555 -0.196 0.450 -2.765 -8.521 0.478 -23.607 -0.915 1.710 -2.679 -1.123 -20.009 -25.082 1 BA_DT10DA9:DA9DT10_BA B 10 ? A 10 ? A 9 ? B 9 ? 1 A DA 9 1_555 B DA 9 1_555 A DG 4 1_555 B DG 8 1_555 -1.369 -0.403 -3.091 1.033 -1.961 81.984 -0.354 1.019 -3.096 -1.495 -0.787 82.008 2 AA_DA9DG4:DG8DA9_BB A 9 ? B 9 ? A 4 ? B 8 ? 1 A DG 4 1_555 B DG 8 1_555 B DG 7 1_555 A DG 3 1_555 0.395 0.941 -2.734 -3.266 -3.783 -14.140 -6.077 3.647 -2.258 14.777 -12.759 -14.994 3 AB_DG4DG7:DG3DG8_AB A 4 ? B 8 ? B 7 ? A 3 ? 1 B DG 7 1_555 A DG 3 1_555 B DG 3 1_555 A DG 7 1_555 -2.054 -2.938 0.031 11.269 -3.975 177.584 -1.469 1.027 0.029 -1.988 -5.636 177.597 4 BB_DG7DG3:DG7DG3_AA B 7 ? A 3 ? B 3 ? A 7 ? 1 B DG 3 1_555 A DG 7 1_555 B DG 4 1_555 A DG 8 1_555 -0.337 -0.620 2.774 3.082 5.703 15.639 -5.106 2.765 2.297 19.881 -10.743 16.922 5 BB_DG3DG4:DG8DG7_AA B 3 ? A 7 ? B 4 ? A 8 ? 1 D DT 10 1_555 C DT 10 1_555 C DA 9 1_555 D DA 9 1_555 -0.004 0.006 -2.524 -0.252 0.047 -22.719 -0.002 0.059 -2.523 -0.120 -0.639 -22.721 6 DC_DT10DA9:DA9DT10_DC D 10 ? C 10 ? C 9 ? D 9 ? 1 C DA 9 1_555 D DA 9 1_555 D DG 4 1_555 D DG 8 1_555 -0.793 -1.829 -3.025 0.374 -0.366 173.145 -0.916 0.397 -3.025 -0.183 -0.187 173.145 7 CD_DA9DG4:DG8DA9_DD C 9 ? D 9 ? D 4 ? D 8 ? 1 D DG 4 1_555 D DG 8 1_555 D DG 7 1_555 D DG 3 1_555 0.499 1.043 -2.737 -4.682 -8.542 -10.529 -9.625 4.984 -1.230 37.605 -20.613 -14.335 8 DD_DG4DG7:DG3DG8_DD D 4 ? D 8 ? D 7 ? D 3 ? 1 D DG 7 1_555 D DG 3 1_555 C DG 3 1_555 C DG 7 1_555 -2.444 -2.609 -0.071 17.897 -10.103 179.390 -1.305 1.222 -0.071 -5.052 -8.948 179.399 9 DC_DG7DG3:DG7DG3_CD D 7 ? D 3 ? C 3 ? C 7 ? 1 C DG 3 1_555 C DG 7 1_555 C DG 4 1_555 C DG 8 1_555 -0.607 -0.900 2.813 7.207 8.011 11.111 -7.909 6.359 1.277 32.899 -29.595 15.467 10 CC_DG3DG4:DG8DG7_CC C 3 ? C 7 ? C 4 ? C 8 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1XCE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_