data_1XCI # _entry.id 1XCI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XCI pdb_00001xci 10.2210/pdb1xci/pdb RCSB RCSB030202 ? ? WWPDB D_1000030202 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-06-06 5 'Structure model' 1 4 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' ndb_struct_conf_na 2 4 'Structure model' pdbx_entity_src_syn 3 4 'Structure model' pdbx_nmr_exptl_sample_conditions 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_assembly_prop 6 4 'Structure model' pdbx_struct_oper_list 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCI _pdbx_database_status.recvd_initial_deposition_date 2004-09-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'da Silva, M.W.' 1 'Bierbryer, R.G.' 2 'Wilds, C.J.' 3 'Noronha, A.M.' 4 'Colvin, O.M.' 5 'Miller, P.S.' 6 'Gamcsik, M.P.' 7 # _citation.id primary _citation.title 'Intrastrand base-stacking buttresses widening of major groove in interstrand cross-linked B-DNA.' _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_volume 13 _citation.page_first 4580 _citation.page_last 4587 _citation.year 2005 _citation.journal_id_ASTM BMECEP _citation.country UK _citation.journal_id_ISSN 0968-0896 _citation.journal_id_CSD 1200 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15953553 _citation.pdbx_database_id_DOI 10.1016/j.bmc.2005.03.032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'da Silva, M.W.' 1 ? primary 'Bierbryer, R.G.' 2 ? primary 'Wilds, C.J.' 3 ? primary 'Noronha, A.M.' 4 ? primary 'Colvin, O.M.' 5 ? primary 'Miller, P.S.' 6 ? primary 'Gamcsik, M.P.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3'" _entity.formula_weight 3376.263 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DA)(DA)(TTM)(DT)(DT)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGAAATTTTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DA n 1 5 DA n 1 6 TTM n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DC n 1 11 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 TTM 'DNA linking' n "N3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE" ? 'C12 H19 N2 O8 P' 350.262 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DA 3 3 3 DA ADE A . n A 1 4 DA 4 4 4 DA ADE A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 TTM 6 6 6 TTM THZ A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DT 9 9 9 DT THY A . n A 1 10 DC 10 10 10 DC CYT A . n A 1 11 DG 11 11 11 DG GUA A . n B 1 1 DC 1 1 1 DC CYT B . n B 1 2 DG 2 2 2 DG GUA B . n B 1 3 DA 3 3 3 DA ADE B . n B 1 4 DA 4 4 4 DA ADE B . n B 1 5 DA 5 5 5 DA ADE B . n B 1 6 TTM 6 6 6 TTM THZ B . n B 1 7 DT 7 7 7 DT THY B . n B 1 8 DT 8 8 8 DT THY B . n B 1 9 DT 9 9 9 DT THY B . n B 1 10 DC 10 10 10 DC CYT B . n B 1 11 DG 11 11 11 DG GUA B . n # _exptl.entry_id 1XCI _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1XCI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XCI _struct.title 'Mispair Aligned N3T-Butyl-N3T Interstrand Crosslink' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCI _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'interstrand cross-link, double helix, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XCI _struct_ref.pdbx_db_accession 1XCI _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XCI A 1 ? 11 ? 1XCI 1 ? 11 ? 1 11 2 1 1XCI B 1 ? 11 ? 1XCI 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2500 ? 1 MORE -2 ? 1 'SSA (A^2)' 3590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A TTM 6 P ? ? A DA 5 A TTM 6 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? A TTM 6 "O3'" ? ? ? 1_555 A DT 7 P ? ? A TTM 6 A DT 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale none ? A TTM 6 C2Q ? ? ? 1_555 B TTM 6 C2Q ? ? A TTM 6 B TTM 6 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale4 covale both ? B DA 5 "O3'" ? ? ? 1_555 B TTM 6 P ? ? B DA 5 B TTM 6 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale5 covale both ? B TTM 6 "O3'" ? ? ? 1_555 B DT 7 P ? ? B TTM 6 B DT 7 1_555 ? ? ? ? ? ? ? 1.602 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 3 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 3 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 5 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 5 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 7 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 7 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.57 102.20 -4.63 0.70 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.51 102.40 -5.89 0.80 N 3 1 "C3'" A DA 3 ? ? "C2'" A DA 3 ? ? "C1'" A DA 3 ? ? 96.23 102.40 -6.17 0.80 N 4 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.45 118.60 3.85 0.60 N 5 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DA 4 ? ? 127.81 119.70 8.11 1.20 Y 6 1 "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 97.72 102.20 -4.48 0.70 N 7 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 94.45 102.40 -7.95 0.80 N 8 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 99.37 105.90 -6.53 0.80 N 9 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 114.98 108.30 6.68 0.30 N 10 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 96.34 102.40 -6.06 0.80 N 11 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 123.55 118.60 4.95 0.60 N 12 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.69 118.00 3.69 0.60 N 13 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.08 122.90 -3.82 0.60 N 14 1 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 96.93 102.40 -5.47 0.80 N 15 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 121.96 118.00 3.96 0.60 N 16 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.10 122.90 -5.80 0.60 N 17 1 "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 101.96 104.50 -2.54 0.40 N 18 1 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 92.09 102.40 -10.31 0.80 N 19 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 100.85 105.90 -5.05 0.80 N 20 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.01 108.30 3.71 0.30 N 21 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C6 A DT 9 ? ? 121.74 118.00 3.74 0.60 N 22 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.74 122.90 -4.16 0.60 N 23 1 "C3'" A DC 10 ? ? "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 96.24 102.40 -6.16 0.80 N 24 1 "O4'" A DG 11 ? ? "C4'" A DG 11 ? ? "C3'" A DG 11 ? ? 100.91 104.50 -3.59 0.40 N 25 1 "C3'" A DG 11 ? ? "C2'" A DG 11 ? ? "C1'" A DG 11 ? ? 93.99 102.40 -8.41 0.80 N 26 1 "C3'" B DC 1 ? ? "C2'" B DC 1 ? ? "C1'" B DC 1 ? ? 95.76 102.40 -6.64 0.80 N 27 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 100.12 105.90 -5.78 0.80 N 28 1 "O4'" B DG 2 ? ? "C4'" B DG 2 ? ? "C3'" B DG 2 ? ? 101.43 104.50 -3.07 0.40 N 29 1 "C3'" B DG 2 ? ? "C2'" B DG 2 ? ? "C1'" B DG 2 ? ? 91.84 102.40 -10.56 0.80 N 30 1 "C3'" B DA 3 ? ? "C2'" B DA 3 ? ? "C1'" B DA 3 ? ? 95.88 102.40 -6.52 0.80 N 31 1 N1 B DA 3 ? ? C6 B DA 3 ? ? N6 B DA 3 ? ? 122.99 118.60 4.39 0.60 N 32 1 "C3'" B DA 3 ? ? "O3'" B DA 3 ? ? P B DA 4 ? ? 127.24 119.70 7.54 1.20 Y 33 1 "C3'" B DA 4 ? ? "C2'" B DA 4 ? ? "C1'" B DA 4 ? ? 93.30 102.40 -9.10 0.80 N 34 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.94 108.30 3.64 0.30 N 35 1 "C3'" B DA 5 ? ? "C2'" B DA 5 ? ? "C1'" B DA 5 ? ? 95.21 102.40 -7.19 0.80 N 36 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 110.42 108.30 2.12 0.30 N 37 1 N1 B DA 5 ? ? C6 B DA 5 ? ? N6 B DA 5 ? ? 123.30 118.60 4.70 0.60 N 38 1 "C3'" B DT 7 ? ? "C2'" B DT 7 ? ? "C1'" B DT 7 ? ? 96.93 102.40 -5.47 0.80 N 39 1 "C3'" B DT 8 ? ? "C2'" B DT 8 ? ? "C1'" B DT 8 ? ? 96.65 102.40 -5.75 0.80 N 40 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? "C2'" B DT 8 ? ? 100.84 105.90 -5.06 0.80 N 41 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 110.20 108.30 1.90 0.30 N 42 1 "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? "C1'" B DT 9 ? ? 92.95 102.40 -9.45 0.80 N 43 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 113.18 108.30 4.88 0.30 N 44 1 "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? "C1'" B DC 10 ? ? 95.47 102.40 -6.93 0.80 N 45 1 "O4'" B DG 11 ? ? "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? 100.75 104.50 -3.75 0.40 N 46 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? "C1'" B DG 11 ? ? 93.44 102.40 -8.96 0.80 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TTM 6 A TTM 6 ? DT "N3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE" 2 B TTM 6 B TTM 6 ? DT "N3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE" # _pdbx_nmr_ensemble.entry_id 1XCI _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XCI _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.5 mM sample in 100 mM NaCl, 50 mM phosphate pH 7.4, D2O' D2O ? ? ? 2 '1.5 mM sample in 100 mM NaCl, 50 mM phosphate pH 7.4, H2O' H2O ? ? ? # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 1 293 normal 7.4 '100 mM NaCl' ? K ? ? ? 2 273 normal 7.4 '100 mM NaCl' ? K ? ? ? # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D NOESY' 4 2 2 JR-NOESY 5 1 1 '31P,1H HETCOR' # _pdbx_nmr_details.entry_id 1XCI _pdbx_nmr_details.text 'Structure determined using standard NMR techniques' # _pdbx_nmr_refine.entry_id 1XCI _pdbx_nmr_refine.method 'distance geometry, simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version 2.1 _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors Brunger _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 TTM P P N N 144 TTM OP1 O N N 145 TTM OP2 O N N 146 TTM "O5'" O N N 147 TTM "C5'" C N N 148 TTM "C4'" C N R 149 TTM "O4'" O N N 150 TTM "C1'" C N R 151 TTM N1 N N N 152 TTM C6 C N N 153 TTM C2 C N N 154 TTM O2 O N N 155 TTM N3 N N N 156 TTM C1Q C N N 157 TTM C2Q C N N 158 TTM C4 C N N 159 TTM O4 O N N 160 TTM C5 C N N 161 TTM C5M C N N 162 TTM "C2'" C N N 163 TTM "C3'" C N S 164 TTM "O3'" O N N 165 TTM OP3 O N N 166 TTM HOP2 H N N 167 TTM "H5'" H N N 168 TTM "H5''" H N N 169 TTM "H4'" H N N 170 TTM "H1'" H N N 171 TTM H6 H N N 172 TTM H1Q H N N 173 TTM H2Q H N N 174 TTM H2 H N N 175 TTM H3Q H N N 176 TTM H4Q H N N 177 TTM H71 H N N 178 TTM H72 H N N 179 TTM H73 H N N 180 TTM "H2'" H N N 181 TTM "H2''" H N N 182 TTM "H3'" H N N 183 TTM "HO3'" H N N 184 TTM HOP3 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 TTM P OP1 doub N N 150 TTM P OP2 sing N N 151 TTM P "O5'" sing N N 152 TTM P OP3 sing N N 153 TTM OP2 HOP2 sing N N 154 TTM "O5'" "C5'" sing N N 155 TTM "C5'" "C4'" sing N N 156 TTM "C5'" "H5'" sing N N 157 TTM "C5'" "H5''" sing N N 158 TTM "C4'" "O4'" sing N N 159 TTM "C4'" "C3'" sing N N 160 TTM "C4'" "H4'" sing N N 161 TTM "O4'" "C1'" sing N N 162 TTM "C1'" N1 sing N N 163 TTM "C1'" "C2'" sing N N 164 TTM "C1'" "H1'" sing N N 165 TTM N1 C6 sing N N 166 TTM N1 C2 sing N N 167 TTM C6 C5 doub N N 168 TTM C6 H6 sing N N 169 TTM C2 O2 doub N N 170 TTM C2 N3 sing N N 171 TTM N3 C1Q sing N N 172 TTM N3 C4 sing N N 173 TTM C1Q C2Q sing N N 174 TTM C1Q H1Q sing N N 175 TTM C1Q H2Q sing N N 176 TTM C2Q H2 sing N N 177 TTM C2Q H3Q sing N N 178 TTM C2Q H4Q sing N N 179 TTM C4 O4 doub N N 180 TTM C4 C5 sing N N 181 TTM C5 C5M sing N N 182 TTM C5M H71 sing N N 183 TTM C5M H72 sing N N 184 TTM C5M H73 sing N N 185 TTM "C2'" "C3'" sing N N 186 TTM "C2'" "H2'" sing N N 187 TTM "C2'" "H2''" sing N N 188 TTM "C3'" "O3'" sing N N 189 TTM "C3'" "H3'" sing N N 190 TTM "O3'" "HO3'" sing N N 191 TTM OP3 HOP3 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XCI 'double helix' 1XCI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.388 -0.201 0.008 -0.250 -0.506 -1.073 1 A_DC1:DG11_B A 1 ? B 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.247 -0.203 -0.032 -0.282 -0.848 -0.318 2 A_DG2:DC10_B A 2 ? B 10 ? 19 1 1 A DA 3 1_555 B DT 9 1_555 -0.255 -0.213 0.040 0.161 0.748 -1.797 3 A_DA3:DT9_B A 3 ? B 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.417 -0.082 -0.015 0.014 -0.259 -5.386 4 A_DA4:DT8_B A 4 ? B 8 ? 20 1 1 A DA 5 1_555 B DT 7 1_555 -0.248 -0.195 0.058 1.128 0.345 -5.851 5 A_DA5:DT7_B A 5 ? B 7 ? 20 1 1 A DT 7 1_555 B DA 5 1_555 0.244 -0.199 -0.034 -1.570 2.514 -5.527 6 A_DT7:DA5_B A 7 ? B 5 ? 20 1 1 A DT 8 1_555 B DA 4 1_555 -0.363 -0.092 0.016 -0.879 0.928 -4.647 7 A_DT8:DA4_B A 8 ? B 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 0.253 -0.211 0.039 -0.100 0.705 -4.006 8 A_DT9:DA3_B A 9 ? B 3 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 0.239 -0.204 -0.023 0.128 -0.683 -1.429 9 A_DC10:DG2_B A 10 ? B 2 ? 19 1 1 A DG 11 1_555 B DC 1 1_555 -0.541 -0.233 0.019 0.488 -0.583 -0.204 10 A_DG11:DC1_B A 11 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.310 1.229 2.966 1.910 -2.131 44.147 1.811 -0.251 2.917 -2.831 -2.538 44.235 1 AA_DC1DG2:DC10DG11_BB A 1 ? B 11 ? A 2 ? B 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DA 3 1_555 B DT 9 1_555 0.210 0.170 3.344 0.222 -16.035 48.280 1.350 -0.229 3.143 -19.004 -0.263 50.722 2 AA_DG2DA3:DT9DC10_BB A 2 ? B 10 ? A 3 ? B 9 ? 1 A DA 3 1_555 B DT 9 1_555 A DA 4 1_555 B DT 8 1_555 0.116 -0.120 3.290 -2.303 4.074 34.645 -0.817 -0.543 3.241 6.802 3.846 34.950 3 AA_DA3DA4:DT8DT9_BB A 3 ? B 9 ? A 4 ? B 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DA 5 1_555 B DT 7 1_555 0.127 -0.852 3.126 -2.113 -1.818 33.960 -1.176 -0.539 3.153 -3.106 3.610 34.070 4 AA_DA4DA5:DT7DT8_BB A 4 ? B 8 ? A 5 ? B 7 ? 1 A DT 7 1_555 B DA 5 1_555 A DT 8 1_555 B DA 4 1_555 0.124 -1.256 3.420 0.074 -13.777 35.950 0.012 -0.179 3.643 -21.379 -0.115 38.418 5 AA_DT7DT8:DA4DA5_BB A 7 ? B 5 ? A 8 ? B 4 ? 1 A DT 8 1_555 B DA 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.467 -0.459 3.397 3.831 5.093 32.334 -1.694 1.490 3.214 9.035 -6.797 32.940 6 AA_DT8DT9:DA3DA4_BB A 8 ? B 4 ? A 9 ? B 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DC 10 1_555 B DG 2 1_555 0.393 -0.241 3.395 -0.490 -17.116 46.925 1.037 -0.505 3.286 -20.704 0.592 49.785 7 AA_DT9DC10:DG2DA3_BB A 9 ? B 3 ? A 10 ? B 2 ? 1 A DC 10 1_555 B DG 2 1_555 A DG 11 1_555 B DC 1 1_555 -0.406 1.432 2.977 -2.198 -3.793 44.134 2.212 0.355 2.866 -5.033 2.916 44.341 8 AA_DC10DG11:DC1DG2_BB A 10 ? B 2 ? A 11 ? B 1 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 # _atom_sites.entry_id 1XCI _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_