HEADER ANTIFUNGAL PROTEIN 04-SEP-04 1XD5 TITLE CRYSTAL STRUCTURES OF NOVEL MONOMERIC MONOCOT MANNOSE-BINDING LECTINS TITLE 2 FROM GASTRODIA ELATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFUNGAL PROTEIN GAFP-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 1-112; COMPND 5 SYNONYM: GASTRODIANIN-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GASTRODIA ELATA; SOURCE 3 ORGANISM_TAXID: 91201; SOURCE 4 TISSUE: CORMS KEYWDS MONOCOT MANNOSE BINDING LECTIN, MONOMER, HOMOGENEOUS BETA-SHEET, KEYWDS 2 ANTIFUNGAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,N.YANG,M.WANG,R.H.HUANG,Z.HU,D.C.WANG REVDAT 4 09-OCT-24 1XD5 1 REMARK REVDAT 3 24-FEB-09 1XD5 1 VERSN REVDAT 2 19-APR-05 1XD5 1 JRNL REVDAT 1 11-JAN-05 1XD5 0 JRNL AUTH W.LIU,N.YANG,J.DING,R.H.HUANG,Z.HU,D.C.WANG JRNL TITL STRUCTURAL MECHANISM GOVERNING THE QUATERNARY ORGANIZATION JRNL TITL 2 OF MONOCOT MANNOSE-BINDING LECTIN REVEALED BY THE NOVEL JRNL TITL 3 MONOMERIC STRUCTURE OF AN ORCHID LECTIN JRNL REF J.BIOL.CHEM. V. 280 14865 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15649901 JRNL DOI 10.1074/JBC.M411634200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3510 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4771 ; 1.104 ; 1.906 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2768 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1443 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 256 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2176 ; 0.697 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3453 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 1.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1318 ; 2.925 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : FIXED-EXIT DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR WITH SILICON (111) REMARK 200 AND GERMANIUM (220) CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, DIOXANE, MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.54350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.74400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.54350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.74400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 195 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN C 112 REMARK 465 GLY D 111 REMARK 465 ASN D 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1077 O HOH A 1077 2555 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 11 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP C 11 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 11 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -171.42 -172.82 REMARK 500 ARG A 78 -149.74 -150.83 REMARK 500 ARG B 78 -156.87 -159.06 REMARK 500 ASN C 37 -6.97 78.75 REMARK 500 ARG C 78 -167.98 -160.24 REMARK 500 ARG C 91 -0.42 80.47 REMARK 500 ASN D 37 -3.69 77.13 REMARK 500 LYS D 48 -134.30 -154.67 REMARK 500 ALA D 49 -152.02 -92.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XD6 RELATED DB: PDB REMARK 900 QUATERNARY STATES OF MONOCOT MANNOSE-BINDING LECTINS DBREF 1XD5 A 1 112 UNP Q9AXZ2 Q9AXZ2_9ASPA 1 112 DBREF 1XD5 B 1 112 UNP Q9AXZ2 Q9AXZ2_9ASPA 1 112 DBREF 1XD5 C 1 112 UNP Q9AXZ2 Q9AXZ2_9ASPA 1 112 DBREF 1XD5 D 1 112 UNP Q9AXZ2 Q9AXZ2_9ASPA 1 112 SEQRES 1 A 112 SER ASP ARG LEU ASN SER GLY HIS GLN LEU ASP THR GLY SEQRES 2 A 112 GLY SER LEU ALA GLU GLY GLY TYR LEU PHE ILE ILE GLN SEQRES 3 A 112 ASN ASP CYS ASN LEU VAL LEU TYR ASP ASN ASN ARG ALA SEQRES 4 A 112 VAL TRP ALA SER GLY THR ASN GLY LYS ALA SER GLY CYS SEQRES 5 A 112 VAL LEU LYS MET GLN ASN ASP GLY ASN LEU VAL ILE TYR SEQRES 6 A 112 SER GLY SER ARG ALA ILE TRP ALA SER ASN THR ASN ARG SEQRES 7 A 112 GLN ASN GLY ASN TYR TYR LEU ILE LEU GLN ARG ASP ARG SEQRES 8 A 112 ASN VAL VAL ILE TYR ASP ASN SER ASN ASN ALA ILE TRP SEQRES 9 A 112 ALA THR HIS THR ASN VAL GLY ASN SEQRES 1 B 112 SER ASP ARG LEU ASN SER GLY HIS GLN LEU ASP THR GLY SEQRES 2 B 112 GLY SER LEU ALA GLU GLY GLY TYR LEU PHE ILE ILE GLN SEQRES 3 B 112 ASN ASP CYS ASN LEU VAL LEU TYR ASP ASN ASN ARG ALA SEQRES 4 B 112 VAL TRP ALA SER GLY THR ASN GLY LYS ALA SER GLY CYS SEQRES 5 B 112 VAL LEU LYS MET GLN ASN ASP GLY ASN LEU VAL ILE TYR SEQRES 6 B 112 SER GLY SER ARG ALA ILE TRP ALA SER ASN THR ASN ARG SEQRES 7 B 112 GLN ASN GLY ASN TYR TYR LEU ILE LEU GLN ARG ASP ARG SEQRES 8 B 112 ASN VAL VAL ILE TYR ASP ASN SER ASN ASN ALA ILE TRP SEQRES 9 B 112 ALA THR HIS THR ASN VAL GLY ASN SEQRES 1 C 112 SER ASP ARG LEU ASN SER GLY HIS GLN LEU ASP THR GLY SEQRES 2 C 112 GLY SER LEU ALA GLU GLY GLY TYR LEU PHE ILE ILE GLN SEQRES 3 C 112 ASN ASP CYS ASN LEU VAL LEU TYR ASP ASN ASN ARG ALA SEQRES 4 C 112 VAL TRP ALA SER GLY THR ASN GLY LYS ALA SER GLY CYS SEQRES 5 C 112 VAL LEU LYS MET GLN ASN ASP GLY ASN LEU VAL ILE TYR SEQRES 6 C 112 SER GLY SER ARG ALA ILE TRP ALA SER ASN THR ASN ARG SEQRES 7 C 112 GLN ASN GLY ASN TYR TYR LEU ILE LEU GLN ARG ASP ARG SEQRES 8 C 112 ASN VAL VAL ILE TYR ASP ASN SER ASN ASN ALA ILE TRP SEQRES 9 C 112 ALA THR HIS THR ASN VAL GLY ASN SEQRES 1 D 112 SER ASP ARG LEU ASN SER GLY HIS GLN LEU ASP THR GLY SEQRES 2 D 112 GLY SER LEU ALA GLU GLY GLY TYR LEU PHE ILE ILE GLN SEQRES 3 D 112 ASN ASP CYS ASN LEU VAL LEU TYR ASP ASN ASN ARG ALA SEQRES 4 D 112 VAL TRP ALA SER GLY THR ASN GLY LYS ALA SER GLY CYS SEQRES 5 D 112 VAL LEU LYS MET GLN ASN ASP GLY ASN LEU VAL ILE TYR SEQRES 6 D 112 SER GLY SER ARG ALA ILE TRP ALA SER ASN THR ASN ARG SEQRES 7 D 112 GLN ASN GLY ASN TYR TYR LEU ILE LEU GLN ARG ASP ARG SEQRES 8 D 112 ASN VAL VAL ILE TYR ASP ASN SER ASN ASN ALA ILE TRP SEQRES 9 D 112 ALA THR HIS THR ASN VAL GLY ASN HET SO4 A1001 5 HET SO4 A1002 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *265(H2 O) SHEET 1 A 4 ARG A 3 ASN A 5 0 SHEET 2 A 4 TYR A 84 LEU A 87 -1 O LEU A 85 N LEU A 4 SHEET 3 A 4 VAL A 93 TYR A 96 -1 O VAL A 94 N ILE A 86 SHEET 4 A 4 ALA A 102 ALA A 105 -1 O ILE A 103 N ILE A 95 SHEET 1 B 4 HIS A 8 LEU A 10 0 SHEET 2 B 4 CYS A 52 MET A 56 -1 O LEU A 54 N LEU A 10 SHEET 3 B 4 LEU A 62 SER A 66 -1 O VAL A 63 N LYS A 55 SHEET 4 B 4 ARG A 69 ALA A 73 -1 O ILE A 71 N ILE A 64 SHEET 1 C 4 SER A 15 GLU A 18 0 SHEET 2 C 4 TYR A 21 ILE A 25 -1 O PHE A 23 N LEU A 16 SHEET 3 C 4 LEU A 31 ASP A 35 -1 O TYR A 34 N LEU A 22 SHEET 4 C 4 ARG A 38 ALA A 42 -1 O ARG A 38 N ASP A 35 SHEET 1 D 4 ARG B 3 ASN B 5 0 SHEET 2 D 4 TYR B 84 LEU B 87 -1 O LEU B 85 N LEU B 4 SHEET 3 D 4 VAL B 93 TYR B 96 -1 O VAL B 94 N ILE B 86 SHEET 4 D 4 ALA B 102 ALA B 105 -1 O ILE B 103 N ILE B 95 SHEET 1 E 4 HIS B 8 LEU B 10 0 SHEET 2 E 4 VAL B 53 MET B 56 -1 O LEU B 54 N LEU B 10 SHEET 3 E 4 LEU B 62 SER B 66 -1 O VAL B 63 N LYS B 55 SHEET 4 E 4 ARG B 69 ALA B 73 -1 O ILE B 71 N ILE B 64 SHEET 1 F 4 SER B 15 GLU B 18 0 SHEET 2 F 4 TYR B 21 ILE B 25 -1 O PHE B 23 N LEU B 16 SHEET 3 F 4 LEU B 31 ASP B 35 -1 O TYR B 34 N LEU B 22 SHEET 4 F 4 ARG B 38 ALA B 42 -1 O TRP B 41 N LEU B 33 SHEET 1 G 4 ARG C 3 ASN C 5 0 SHEET 2 G 4 TYR C 84 LEU C 87 -1 O LEU C 85 N LEU C 4 SHEET 3 G 4 VAL C 93 TYR C 96 -1 O TYR C 96 N TYR C 84 SHEET 4 G 4 ALA C 102 ALA C 105 -1 O ILE C 103 N ILE C 95 SHEET 1 H 4 HIS C 8 LEU C 10 0 SHEET 2 H 4 CYS C 52 MET C 56 -1 O LEU C 54 N LEU C 10 SHEET 3 H 4 LEU C 62 SER C 66 -1 O VAL C 63 N LYS C 55 SHEET 4 H 4 ARG C 69 ALA C 73 -1 O ARG C 69 N SER C 66 SHEET 1 I 4 SER C 15 GLU C 18 0 SHEET 2 I 4 TYR C 21 ILE C 25 -1 O TYR C 21 N GLU C 18 SHEET 3 I 4 LEU C 31 ASP C 35 -1 O TYR C 34 N LEU C 22 SHEET 4 I 4 ARG C 38 ALA C 42 -1 O ARG C 38 N ASP C 35 SHEET 1 J 4 ARG D 3 ASN D 5 0 SHEET 2 J 4 TYR D 84 LEU D 87 -1 O LEU D 85 N LEU D 4 SHEET 3 J 4 VAL D 93 TYR D 96 -1 O VAL D 94 N ILE D 86 SHEET 4 J 4 ALA D 102 ALA D 105 -1 O TRP D 104 N ILE D 95 SHEET 1 K 4 HIS D 8 LEU D 10 0 SHEET 2 K 4 CYS D 52 MET D 56 -1 O LEU D 54 N LEU D 10 SHEET 3 K 4 LEU D 62 SER D 66 -1 O VAL D 63 N LYS D 55 SHEET 4 K 4 ARG D 69 ALA D 73 -1 O ARG D 69 N SER D 66 SHEET 1 L 4 SER D 15 GLU D 18 0 SHEET 2 L 4 TYR D 21 ILE D 25 -1 O PHE D 23 N LEU D 16 SHEET 3 L 4 LEU D 31 ASP D 35 -1 O TYR D 34 N LEU D 22 SHEET 4 L 4 ARG D 38 ALA D 42 -1 O ARG D 38 N ASP D 35 SSBOND 1 CYS A 29 CYS A 52 1555 1555 1.98 SSBOND 2 CYS B 29 CYS B 52 1555 1555 2.02 SSBOND 3 CYS C 29 CYS C 52 1555 1555 1.99 SSBOND 4 CYS D 29 CYS D 52 1555 1555 2.00 SITE 1 AC1 6 ASN A 46 GLY A 47 HOH A1054 HOH A1070 SITE 2 AC1 6 ARG B 38 ARG B 91 SITE 1 AC2 5 ARG A 38 ARG A 91 HOH A1078 ASN B 46 SITE 2 AC2 5 GLY B 47 CRYST1 61.087 91.488 81.132 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012326 0.00000