data_1XDN # _entry.id 1XDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XDN pdb_00001xdn 10.2210/pdb1xdn/pdb RCSB RCSB030242 ? ? WWPDB D_1000030242 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-07 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-09-10 5 'Structure model' 1 4 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_entry_details 5 5 'Structure model' pdbx_modification_feature 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.value' 6 5 'Structure model' '_struct_conn.pdbx_dist_value' 7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 5 'Structure model' '_struct_ref_seq_dif.details' 19 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XDN _pdbx_database_status.recvd_initial_deposition_date 2004-09-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Deng, J.' 1 'Schnaufer, A.' 2 'Salavati, R.' 3 'Stuart, K.D.' 4 'Hol, W.G.' 5 # _citation.id primary _citation.title 'High resolution crystal structure of a key editosome enzyme from Trypanosoma brucei: RNA editing ligase 1.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 343 _citation.page_first 601 _citation.page_last 613 _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15465048 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.08.041 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deng, J.' 1 ? primary 'Schnaufer, A.' 2 ? primary 'Salavati, R.' 3 ? primary 'Stuart, K.D.' 4 ? primary 'Hol, W.G.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA editing ligase MP52' 31537.598 1 ? ? 'Adenylation domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 4 water nat water 18.015 440 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GHMDQSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGI(MSE)DPNENFFG YHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPE LHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARALVRGTLDECLAFDVENF(MSE)TPLPALLGLGNYPLEG NLAEGVVIRHVRRGDPAVEKHNVSTIIKLRCSSF(MSE)ELKHPGKQKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMDQSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHIL IDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELHFF AFDIKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVI RHVRRGDPAVEKHNVSTIIKLRCSSFMELKHPGKQKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "ADENOSINE-5'-TRIPHOSPHATE" ATP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ASP n 1 5 GLN n 1 6 SER n 1 7 ASP n 1 8 PHE n 1 9 SER n 1 10 PRO n 1 11 TYR n 1 12 ILE n 1 13 GLU n 1 14 ILE n 1 15 ASP n 1 16 LEU n 1 17 PRO n 1 18 SER n 1 19 GLU n 1 20 SER n 1 21 ARG n 1 22 ILE n 1 23 GLN n 1 24 SER n 1 25 LEU n 1 26 HIS n 1 27 LYS n 1 28 SER n 1 29 GLY n 1 30 LEU n 1 31 ALA n 1 32 ALA n 1 33 GLN n 1 34 GLU n 1 35 TRP n 1 36 VAL n 1 37 ALA n 1 38 CYS n 1 39 GLU n 1 40 LYS n 1 41 VAL n 1 42 HIS n 1 43 GLY n 1 44 THR n 1 45 ASN n 1 46 PHE n 1 47 GLY n 1 48 ILE n 1 49 TYR n 1 50 LEU n 1 51 ILE n 1 52 ASN n 1 53 GLN n 1 54 GLY n 1 55 ASP n 1 56 HIS n 1 57 GLU n 1 58 VAL n 1 59 VAL n 1 60 ARG n 1 61 PHE n 1 62 ALA n 1 63 LYS n 1 64 ARG n 1 65 SER n 1 66 GLY n 1 67 ILE n 1 68 MSE n 1 69 ASP n 1 70 PRO n 1 71 ASN n 1 72 GLU n 1 73 ASN n 1 74 PHE n 1 75 PHE n 1 76 GLY n 1 77 TYR n 1 78 HIS n 1 79 ILE n 1 80 LEU n 1 81 ILE n 1 82 ASP n 1 83 GLU n 1 84 PHE n 1 85 THR n 1 86 ALA n 1 87 GLN n 1 88 ILE n 1 89 ARG n 1 90 ILE n 1 91 LEU n 1 92 ASN n 1 93 ASP n 1 94 LEU n 1 95 LEU n 1 96 LYS n 1 97 GLN n 1 98 LYS n 1 99 TYR n 1 100 GLY n 1 101 LEU n 1 102 SER n 1 103 ARG n 1 104 VAL n 1 105 GLY n 1 106 ARG n 1 107 LEU n 1 108 VAL n 1 109 LEU n 1 110 ASN n 1 111 GLY n 1 112 GLU n 1 113 LEU n 1 114 PHE n 1 115 GLY n 1 116 ALA n 1 117 LYS n 1 118 TYR n 1 119 LYS n 1 120 HIS n 1 121 PRO n 1 122 LEU n 1 123 VAL n 1 124 PRO n 1 125 LYS n 1 126 SER n 1 127 GLU n 1 128 LYS n 1 129 TRP n 1 130 CYS n 1 131 THR n 1 132 LEU n 1 133 PRO n 1 134 ASN n 1 135 GLY n 1 136 LYS n 1 137 LYS n 1 138 PHE n 1 139 PRO n 1 140 ILE n 1 141 ALA n 1 142 GLY n 1 143 VAL n 1 144 GLN n 1 145 ILE n 1 146 GLN n 1 147 ARG n 1 148 GLU n 1 149 PRO n 1 150 PHE n 1 151 PRO n 1 152 GLN n 1 153 TYR n 1 154 SER n 1 155 PRO n 1 156 GLU n 1 157 LEU n 1 158 HIS n 1 159 PHE n 1 160 PHE n 1 161 ALA n 1 162 PHE n 1 163 ASP n 1 164 ILE n 1 165 LYS n 1 166 TYR n 1 167 SER n 1 168 VAL n 1 169 SER n 1 170 GLY n 1 171 ALA n 1 172 GLU n 1 173 GLU n 1 174 ASP n 1 175 PHE n 1 176 VAL n 1 177 LEU n 1 178 LEU n 1 179 GLY n 1 180 TYR n 1 181 ASP n 1 182 GLU n 1 183 PHE n 1 184 VAL n 1 185 GLU n 1 186 PHE n 1 187 SER n 1 188 SER n 1 189 LYS n 1 190 VAL n 1 191 PRO n 1 192 ASN n 1 193 LEU n 1 194 LEU n 1 195 TYR n 1 196 ALA n 1 197 ARG n 1 198 ALA n 1 199 LEU n 1 200 VAL n 1 201 ARG n 1 202 GLY n 1 203 THR n 1 204 LEU n 1 205 ASP n 1 206 GLU n 1 207 CYS n 1 208 LEU n 1 209 ALA n 1 210 PHE n 1 211 ASP n 1 212 VAL n 1 213 GLU n 1 214 ASN n 1 215 PHE n 1 216 MSE n 1 217 THR n 1 218 PRO n 1 219 LEU n 1 220 PRO n 1 221 ALA n 1 222 LEU n 1 223 LEU n 1 224 GLY n 1 225 LEU n 1 226 GLY n 1 227 ASN n 1 228 TYR n 1 229 PRO n 1 230 LEU n 1 231 GLU n 1 232 GLY n 1 233 ASN n 1 234 LEU n 1 235 ALA n 1 236 GLU n 1 237 GLY n 1 238 VAL n 1 239 VAL n 1 240 ILE n 1 241 ARG n 1 242 HIS n 1 243 VAL n 1 244 ARG n 1 245 ARG n 1 246 GLY n 1 247 ASP n 1 248 PRO n 1 249 ALA n 1 250 VAL n 1 251 GLU n 1 252 LYS n 1 253 HIS n 1 254 ASN n 1 255 VAL n 1 256 SER n 1 257 THR n 1 258 ILE n 1 259 ILE n 1 260 LYS n 1 261 LEU n 1 262 ARG n 1 263 CYS n 1 264 SER n 1 265 SER n 1 266 PHE n 1 267 MSE n 1 268 GLU n 1 269 LEU n 1 270 LYS n 1 271 HIS n 1 272 PRO n 1 273 GLY n 1 274 LYS n 1 275 GLN n 1 276 LYS n 1 277 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Trypanosoma _entity_src_gen.pdbx_gene_src_gene MP52 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma brucei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5691 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21GOLD DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pskB3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 48 ? ? ? A . n A 1 2 HIS 2 49 ? ? ? A . n A 1 3 MET 3 50 ? ? ? A . n A 1 4 ASP 4 51 ? ? ? A . n A 1 5 GLN 5 52 52 GLN GLN A . n A 1 6 SER 6 53 53 SER SER A . n A 1 7 ASP 7 54 54 ASP ASP A . n A 1 8 PHE 8 55 55 PHE PHE A . n A 1 9 SER 9 56 56 SER SER A . n A 1 10 PRO 10 57 57 PRO PRO A . n A 1 11 TYR 11 58 58 TYR TYR A . n A 1 12 ILE 12 59 59 ILE ILE A . n A 1 13 GLU 13 60 60 GLU GLU A . n A 1 14 ILE 14 61 61 ILE ILE A . n A 1 15 ASP 15 62 62 ASP ASP A . n A 1 16 LEU 16 63 63 LEU LEU A . n A 1 17 PRO 17 64 64 PRO PRO A . n A 1 18 SER 18 65 65 SER SER A . n A 1 19 GLU 19 66 66 GLU GLU A . n A 1 20 SER 20 67 67 SER SER A . n A 1 21 ARG 21 68 68 ARG ARG A . n A 1 22 ILE 22 69 69 ILE ILE A . n A 1 23 GLN 23 70 70 GLN GLN A . n A 1 24 SER 24 71 71 SER SER A . n A 1 25 LEU 25 72 72 LEU LEU A . n A 1 26 HIS 26 73 73 HIS HIS A . n A 1 27 LYS 27 74 74 LYS LYS A . n A 1 28 SER 28 75 75 SER SER A . n A 1 29 GLY 29 76 76 GLY GLY A . n A 1 30 LEU 30 77 77 LEU LEU A . n A 1 31 ALA 31 78 78 ALA ALA A . n A 1 32 ALA 32 79 79 ALA ALA A . n A 1 33 GLN 33 80 80 GLN GLN A . n A 1 34 GLU 34 81 81 GLU GLU A . n A 1 35 TRP 35 82 82 TRP TRP A . n A 1 36 VAL 36 83 83 VAL VAL A . n A 1 37 ALA 37 84 84 ALA ALA A . n A 1 38 CYS 38 85 85 CYS CYS A . n A 1 39 GLU 39 86 86 GLU GLU A . n A 1 40 LYS 40 87 87 LYS LYS A . n A 1 41 VAL 41 88 88 VAL VAL A . n A 1 42 HIS 42 89 89 HIS HIS A . n A 1 43 GLY 43 90 90 GLY GLY A . n A 1 44 THR 44 91 91 THR THR A . n A 1 45 ASN 45 92 92 ASN ASN A . n A 1 46 PHE 46 93 93 PHE PHE A . n A 1 47 GLY 47 94 94 GLY GLY A . n A 1 48 ILE 48 95 95 ILE ILE A . n A 1 49 TYR 49 96 96 TYR TYR A . n A 1 50 LEU 50 97 97 LEU LEU A . n A 1 51 ILE 51 98 98 ILE ILE A . n A 1 52 ASN 52 99 99 ASN ASN A . n A 1 53 GLN 53 100 100 GLN GLN A . n A 1 54 GLY 54 101 101 GLY GLY A . n A 1 55 ASP 55 102 102 ASP ASP A . n A 1 56 HIS 56 103 103 HIS HIS A . n A 1 57 GLU 57 104 104 GLU GLU A . n A 1 58 VAL 58 105 105 VAL VAL A . n A 1 59 VAL 59 106 106 VAL VAL A . n A 1 60 ARG 60 107 107 ARG ARG A . n A 1 61 PHE 61 108 108 PHE PHE A . n A 1 62 ALA 62 109 109 ALA ALA A . n A 1 63 LYS 63 110 110 LYS LYS A . n A 1 64 ARG 64 111 111 ARG ARG A . n A 1 65 SER 65 112 112 SER SER A . n A 1 66 GLY 66 113 113 GLY GLY A . n A 1 67 ILE 67 114 114 ILE ILE A . n A 1 68 MSE 68 115 115 MSE MSE A . n A 1 69 ASP 69 116 116 ASP ASP A . n A 1 70 PRO 70 117 117 PRO PRO A . n A 1 71 ASN 71 118 118 ASN ASN A . n A 1 72 GLU 72 119 119 GLU GLU A . n A 1 73 ASN 73 120 120 ASN ASN A . n A 1 74 PHE 74 121 121 PHE PHE A . n A 1 75 PHE 75 122 122 PHE PHE A . n A 1 76 GLY 76 123 123 GLY GLY A . n A 1 77 TYR 77 124 124 TYR TYR A . n A 1 78 HIS 78 125 125 HIS HIS A . n A 1 79 ILE 79 126 126 ILE ILE A . n A 1 80 LEU 80 127 127 LEU LEU A . n A 1 81 ILE 81 128 128 ILE ILE A . n A 1 82 ASP 82 129 129 ASP ASP A . n A 1 83 GLU 83 130 130 GLU GLU A . n A 1 84 PHE 84 131 131 PHE PHE A . n A 1 85 THR 85 132 132 THR THR A . n A 1 86 ALA 86 133 133 ALA ALA A . n A 1 87 GLN 87 134 134 GLN GLN A . n A 1 88 ILE 88 135 135 ILE ILE A . n A 1 89 ARG 89 136 136 ARG ARG A . n A 1 90 ILE 90 137 137 ILE ILE A . n A 1 91 LEU 91 138 138 LEU LEU A . n A 1 92 ASN 92 139 139 ASN ASN A . n A 1 93 ASP 93 140 140 ASP ASP A . n A 1 94 LEU 94 141 141 LEU LEU A . n A 1 95 LEU 95 142 142 LEU LEU A . n A 1 96 LYS 96 143 143 LYS LYS A . n A 1 97 GLN 97 144 144 GLN GLN A . n A 1 98 LYS 98 145 145 LYS LYS A . n A 1 99 TYR 99 146 146 TYR TYR A . n A 1 100 GLY 100 147 147 GLY GLY A . n A 1 101 LEU 101 148 148 LEU LEU A . n A 1 102 SER 102 149 149 SER SER A . n A 1 103 ARG 103 150 150 ARG ARG A . n A 1 104 VAL 104 151 151 VAL VAL A . n A 1 105 GLY 105 152 152 GLY GLY A . n A 1 106 ARG 106 153 153 ARG ARG A . n A 1 107 LEU 107 154 154 LEU LEU A . n A 1 108 VAL 108 155 155 VAL VAL A . n A 1 109 LEU 109 156 156 LEU LEU A . n A 1 110 ASN 110 157 157 ASN ASN A . n A 1 111 GLY 111 158 158 GLY GLY A . n A 1 112 GLU 112 159 159 GLU GLU A . n A 1 113 LEU 113 160 160 LEU LEU A . n A 1 114 PHE 114 161 161 PHE PHE A . n A 1 115 GLY 115 162 162 GLY GLY A . n A 1 116 ALA 116 163 163 ALA ALA A . n A 1 117 LYS 117 164 164 LYS LYS A . n A 1 118 TYR 118 165 165 TYR TYR A . n A 1 119 LYS 119 166 166 LYS LYS A . n A 1 120 HIS 120 167 167 HIS HIS A . n A 1 121 PRO 121 168 168 PRO PRO A . n A 1 122 LEU 122 169 169 LEU LEU A . n A 1 123 VAL 123 170 170 VAL VAL A . n A 1 124 PRO 124 171 171 PRO PRO A . n A 1 125 LYS 125 172 172 LYS LYS A . n A 1 126 SER 126 173 173 SER SER A . n A 1 127 GLU 127 174 174 GLU GLU A . n A 1 128 LYS 128 175 175 LYS LYS A . n A 1 129 TRP 129 176 176 TRP TRP A . n A 1 130 CYS 130 177 177 CYS CYS A . n A 1 131 THR 131 178 178 THR THR A . n A 1 132 LEU 132 179 179 LEU LEU A . n A 1 133 PRO 133 180 180 PRO PRO A . n A 1 134 ASN 134 181 181 ASN ASN A . n A 1 135 GLY 135 182 182 GLY GLY A . n A 1 136 LYS 136 183 183 LYS LYS A . n A 1 137 LYS 137 184 184 LYS LYS A . n A 1 138 PHE 138 185 185 PHE PHE A . n A 1 139 PRO 139 186 186 PRO PRO A . n A 1 140 ILE 140 187 187 ILE ILE A . n A 1 141 ALA 141 188 188 ALA ALA A . n A 1 142 GLY 142 189 189 GLY GLY A . n A 1 143 VAL 143 190 190 VAL VAL A . n A 1 144 GLN 144 191 191 GLN GLN A . n A 1 145 ILE 145 192 192 ILE ILE A . n A 1 146 GLN 146 193 193 GLN GLN A . n A 1 147 ARG 147 194 194 ARG ARG A . n A 1 148 GLU 148 195 195 GLU GLU A . n A 1 149 PRO 149 196 196 PRO PRO A . n A 1 150 PHE 150 197 197 PHE PHE A . n A 1 151 PRO 151 198 198 PRO PRO A . n A 1 152 GLN 152 199 199 GLN GLN A . n A 1 153 TYR 153 200 200 TYR TYR A . n A 1 154 SER 154 201 201 SER SER A . n A 1 155 PRO 155 202 202 PRO PRO A . n A 1 156 GLU 156 203 203 GLU GLU A . n A 1 157 LEU 157 204 204 LEU LEU A . n A 1 158 HIS 158 205 205 HIS HIS A . n A 1 159 PHE 159 206 206 PHE PHE A . n A 1 160 PHE 160 207 207 PHE PHE A . n A 1 161 ALA 161 208 208 ALA ALA A . n A 1 162 PHE 162 209 209 PHE PHE A . n A 1 163 ASP 163 210 210 ASP ASP A . n A 1 164 ILE 164 211 211 ILE ILE A . n A 1 165 LYS 165 212 212 LYS LYS A . n A 1 166 TYR 166 213 213 TYR TYR A . n A 1 167 SER 167 214 214 SER SER A . n A 1 168 VAL 168 215 215 VAL VAL A . n A 1 169 SER 169 216 216 SER SER A . n A 1 170 GLY 170 217 217 GLY GLY A . n A 1 171 ALA 171 218 218 ALA ALA A . n A 1 172 GLU 172 219 219 GLU GLU A . n A 1 173 GLU 173 220 220 GLU GLU A . n A 1 174 ASP 174 221 221 ASP ASP A . n A 1 175 PHE 175 222 222 PHE PHE A . n A 1 176 VAL 176 223 223 VAL VAL A . n A 1 177 LEU 177 224 224 LEU LEU A . n A 1 178 LEU 178 225 225 LEU LEU A . n A 1 179 GLY 179 226 226 GLY GLY A . n A 1 180 TYR 180 227 227 TYR TYR A . n A 1 181 ASP 181 228 228 ASP ASP A . n A 1 182 GLU 182 229 229 GLU GLU A . n A 1 183 PHE 183 230 230 PHE PHE A . n A 1 184 VAL 184 231 231 VAL VAL A . n A 1 185 GLU 185 232 232 GLU GLU A . n A 1 186 PHE 186 233 233 PHE PHE A . n A 1 187 SER 187 234 234 SER SER A . n A 1 188 SER 188 235 235 SER SER A . n A 1 189 LYS 189 236 236 LYS LYS A . n A 1 190 VAL 190 237 237 VAL VAL A . n A 1 191 PRO 191 238 238 PRO PRO A . n A 1 192 ASN 192 239 239 ASN ASN A . n A 1 193 LEU 193 240 240 LEU LEU A . n A 1 194 LEU 194 241 241 LEU LEU A . n A 1 195 TYR 195 242 242 TYR TYR A . n A 1 196 ALA 196 243 243 ALA ALA A . n A 1 197 ARG 197 244 244 ARG ARG A . n A 1 198 ALA 198 245 245 ALA ALA A . n A 1 199 LEU 199 246 246 LEU LEU A . n A 1 200 VAL 200 247 247 VAL VAL A . n A 1 201 ARG 201 248 248 ARG ARG A . n A 1 202 GLY 202 249 249 GLY GLY A . n A 1 203 THR 203 250 250 THR THR A . n A 1 204 LEU 204 251 251 LEU LEU A . n A 1 205 ASP 205 252 252 ASP ASP A . n A 1 206 GLU 206 253 253 GLU GLU A . n A 1 207 CYS 207 254 254 CYS CYS A . n A 1 208 LEU 208 255 255 LEU LEU A . n A 1 209 ALA 209 256 256 ALA ALA A . n A 1 210 PHE 210 257 257 PHE PHE A . n A 1 211 ASP 211 258 258 ASP ASP A . n A 1 212 VAL 212 259 259 VAL VAL A . n A 1 213 GLU 213 260 260 GLU GLU A . n A 1 214 ASN 214 261 261 ASN ASN A . n A 1 215 PHE 215 262 262 PHE PHE A . n A 1 216 MSE 216 263 263 MSE MSE A . n A 1 217 THR 217 264 264 THR THR A . n A 1 218 PRO 218 265 265 PRO PRO A . n A 1 219 LEU 219 266 266 LEU LEU A . n A 1 220 PRO 220 267 267 PRO PRO A . n A 1 221 ALA 221 268 268 ALA ALA A . n A 1 222 LEU 222 269 269 LEU LEU A . n A 1 223 LEU 223 270 270 LEU LEU A . n A 1 224 GLY 224 271 271 GLY GLY A . n A 1 225 LEU 225 272 272 LEU LEU A . n A 1 226 GLY 226 273 273 GLY GLY A . n A 1 227 ASN 227 274 274 ASN ASN A . n A 1 228 TYR 228 275 275 TYR TYR A . n A 1 229 PRO 229 276 276 PRO PRO A . n A 1 230 LEU 230 277 277 LEU LEU A . n A 1 231 GLU 231 278 278 GLU GLU A . n A 1 232 GLY 232 279 279 GLY GLY A . n A 1 233 ASN 233 280 280 ASN ASN A . n A 1 234 LEU 234 281 281 LEU LEU A . n A 1 235 ALA 235 282 282 ALA ALA A . n A 1 236 GLU 236 283 283 GLU GLU A . n A 1 237 GLY 237 284 284 GLY GLY A . n A 1 238 VAL 238 285 285 VAL VAL A . n A 1 239 VAL 239 286 286 VAL VAL A . n A 1 240 ILE 240 287 287 ILE ILE A . n A 1 241 ARG 241 288 288 ARG ARG A . n A 1 242 HIS 242 289 289 HIS HIS A . n A 1 243 VAL 243 290 290 VAL VAL A . n A 1 244 ARG 244 291 291 ARG ARG A . n A 1 245 ARG 245 292 292 ARG ARG A . n A 1 246 GLY 246 293 293 GLY GLY A . n A 1 247 ASP 247 294 294 ASP ASP A . n A 1 248 PRO 248 295 295 PRO PRO A . n A 1 249 ALA 249 296 296 ALA ALA A . n A 1 250 VAL 250 297 297 VAL VAL A . n A 1 251 GLU 251 298 298 GLU GLU A . n A 1 252 LYS 252 299 299 LYS LYS A . n A 1 253 HIS 253 300 300 HIS HIS A . n A 1 254 ASN 254 301 301 ASN ASN A . n A 1 255 VAL 255 302 302 VAL VAL A . n A 1 256 SER 256 303 303 SER SER A . n A 1 257 THR 257 304 304 THR THR A . n A 1 258 ILE 258 305 305 ILE ILE A . n A 1 259 ILE 259 306 306 ILE ILE A . n A 1 260 LYS 260 307 307 LYS LYS A . n A 1 261 LEU 261 308 308 LEU LEU A . n A 1 262 ARG 262 309 309 ARG ARG A . n A 1 263 CYS 263 310 310 CYS CYS A . n A 1 264 SER 264 311 311 SER SER A . n A 1 265 SER 265 312 312 SER SER A . n A 1 266 PHE 266 313 313 PHE PHE A . n A 1 267 MSE 267 314 314 MSE MSE A . n A 1 268 GLU 268 315 315 GLU GLU A . n A 1 269 LEU 269 316 316 LEU LEU A . n A 1 270 LYS 270 317 ? ? ? A . n A 1 271 HIS 271 318 ? ? ? A . n A 1 272 PRO 272 319 ? ? ? A . n A 1 273 GLY 273 320 ? ? ? A . n A 1 274 LYS 274 321 ? ? ? A . n A 1 275 GLN 275 322 ? ? ? A . n A 1 276 LYS 276 323 ? ? ? A . n A 1 277 GLU 277 324 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 502 502 MG MG A . C 3 ATP 1 501 501 ATP ATP A . D 4 HOH 1 503 1 HOH HOH A . D 4 HOH 2 504 2 HOH HOH A . D 4 HOH 3 505 3 HOH HOH A . D 4 HOH 4 506 4 HOH HOH A . D 4 HOH 5 507 5 HOH HOH A . D 4 HOH 6 508 6 HOH HOH A . D 4 HOH 7 509 7 HOH HOH A . D 4 HOH 8 510 8 HOH HOH A . D 4 HOH 9 511 9 HOH HOH A . D 4 HOH 10 512 10 HOH HOH A . D 4 HOH 11 513 11 HOH HOH A . D 4 HOH 12 514 12 HOH HOH A . D 4 HOH 13 515 13 HOH HOH A . D 4 HOH 14 516 14 HOH HOH A . D 4 HOH 15 517 15 HOH HOH A . D 4 HOH 16 518 16 HOH HOH A . D 4 HOH 17 519 17 HOH HOH A . D 4 HOH 18 520 18 HOH HOH A . D 4 HOH 19 521 19 HOH HOH A . D 4 HOH 20 522 20 HOH HOH A . D 4 HOH 21 523 21 HOH HOH A . D 4 HOH 22 524 22 HOH HOH A . D 4 HOH 23 525 23 HOH HOH A . D 4 HOH 24 526 24 HOH HOH A . D 4 HOH 25 527 25 HOH HOH A . D 4 HOH 26 528 26 HOH HOH A . D 4 HOH 27 529 27 HOH HOH A . D 4 HOH 28 530 28 HOH HOH A . D 4 HOH 29 531 29 HOH HOH A . D 4 HOH 30 532 30 HOH HOH A . D 4 HOH 31 533 31 HOH HOH A . D 4 HOH 32 534 32 HOH HOH A . D 4 HOH 33 535 33 HOH HOH A . D 4 HOH 34 536 34 HOH HOH A . D 4 HOH 35 537 35 HOH HOH A . D 4 HOH 36 538 36 HOH HOH A . D 4 HOH 37 539 37 HOH HOH A . D 4 HOH 38 540 38 HOH HOH A . D 4 HOH 39 541 39 HOH HOH A . D 4 HOH 40 542 40 HOH HOH A . D 4 HOH 41 543 41 HOH HOH A . D 4 HOH 42 544 42 HOH HOH A . D 4 HOH 43 545 43 HOH HOH A . D 4 HOH 44 546 44 HOH HOH A . D 4 HOH 45 547 45 HOH HOH A . D 4 HOH 46 548 46 HOH HOH A . D 4 HOH 47 549 47 HOH HOH A . D 4 HOH 48 550 48 HOH HOH A . D 4 HOH 49 551 49 HOH HOH A . D 4 HOH 50 552 50 HOH HOH A . D 4 HOH 51 553 51 HOH HOH A . D 4 HOH 52 554 52 HOH HOH A . D 4 HOH 53 555 53 HOH HOH A . D 4 HOH 54 556 54 HOH HOH A . D 4 HOH 55 557 55 HOH HOH A . D 4 HOH 56 558 56 HOH HOH A . D 4 HOH 57 559 57 HOH HOH A . D 4 HOH 58 560 58 HOH HOH A . D 4 HOH 59 561 59 HOH HOH A . D 4 HOH 60 562 60 HOH HOH A . D 4 HOH 61 563 61 HOH HOH A . D 4 HOH 62 564 62 HOH HOH A . D 4 HOH 63 565 63 HOH HOH A . D 4 HOH 64 566 64 HOH HOH A . D 4 HOH 65 567 65 HOH HOH A . D 4 HOH 66 568 66 HOH HOH A . D 4 HOH 67 569 67 HOH HOH A . D 4 HOH 68 570 68 HOH HOH A . D 4 HOH 69 571 69 HOH HOH A . D 4 HOH 70 572 70 HOH HOH A . D 4 HOH 71 573 71 HOH HOH A . D 4 HOH 72 574 72 HOH HOH A . D 4 HOH 73 575 73 HOH HOH A . D 4 HOH 74 576 74 HOH HOH A . D 4 HOH 75 577 75 HOH HOH A . D 4 HOH 76 578 76 HOH HOH A . D 4 HOH 77 579 77 HOH HOH A . D 4 HOH 78 580 78 HOH HOH A . D 4 HOH 79 581 79 HOH HOH A . D 4 HOH 80 582 80 HOH HOH A . D 4 HOH 81 583 81 HOH HOH A . D 4 HOH 82 584 82 HOH HOH A . D 4 HOH 83 585 83 HOH HOH A . D 4 HOH 84 586 84 HOH HOH A . D 4 HOH 85 587 85 HOH HOH A . D 4 HOH 86 588 86 HOH HOH A . D 4 HOH 87 589 87 HOH HOH A . D 4 HOH 88 590 88 HOH HOH A . D 4 HOH 89 591 89 HOH HOH A . D 4 HOH 90 592 90 HOH HOH A . D 4 HOH 91 593 91 HOH HOH A . D 4 HOH 92 594 92 HOH HOH A . D 4 HOH 93 595 93 HOH HOH A . D 4 HOH 94 596 94 HOH HOH A . D 4 HOH 95 597 95 HOH HOH A . D 4 HOH 96 598 96 HOH HOH A . D 4 HOH 97 599 97 HOH HOH A . D 4 HOH 98 600 98 HOH HOH A . D 4 HOH 99 601 99 HOH HOH A . D 4 HOH 100 602 100 HOH HOH A . D 4 HOH 101 603 101 HOH HOH A . D 4 HOH 102 604 102 HOH HOH A . D 4 HOH 103 605 103 HOH HOH A . D 4 HOH 104 606 104 HOH HOH A . D 4 HOH 105 607 105 HOH HOH A . D 4 HOH 106 608 106 HOH HOH A . D 4 HOH 107 609 107 HOH HOH A . D 4 HOH 108 610 108 HOH HOH A . D 4 HOH 109 611 109 HOH HOH A . D 4 HOH 110 612 110 HOH HOH A . D 4 HOH 111 613 111 HOH HOH A . D 4 HOH 112 614 112 HOH HOH A . D 4 HOH 113 615 113 HOH HOH A . D 4 HOH 114 616 114 HOH HOH A . D 4 HOH 115 617 115 HOH HOH A . D 4 HOH 116 618 116 HOH HOH A . D 4 HOH 117 619 117 HOH HOH A . D 4 HOH 118 620 118 HOH HOH A . D 4 HOH 119 621 119 HOH HOH A . D 4 HOH 120 622 120 HOH HOH A . D 4 HOH 121 623 121 HOH HOH A . D 4 HOH 122 624 122 HOH HOH A . D 4 HOH 123 625 123 HOH HOH A . D 4 HOH 124 626 124 HOH HOH A . D 4 HOH 125 627 125 HOH HOH A . D 4 HOH 126 628 126 HOH HOH A . D 4 HOH 127 629 127 HOH HOH A . D 4 HOH 128 630 128 HOH HOH A . D 4 HOH 129 631 129 HOH HOH A . D 4 HOH 130 632 130 HOH HOH A . D 4 HOH 131 633 131 HOH HOH A . D 4 HOH 132 634 132 HOH HOH A . D 4 HOH 133 635 133 HOH HOH A . D 4 HOH 134 636 134 HOH HOH A . D 4 HOH 135 637 135 HOH HOH A . D 4 HOH 136 638 136 HOH HOH A . D 4 HOH 137 639 137 HOH HOH A . D 4 HOH 138 640 138 HOH HOH A . D 4 HOH 139 641 139 HOH HOH A . D 4 HOH 140 642 140 HOH HOH A . D 4 HOH 141 643 141 HOH HOH A . D 4 HOH 142 644 142 HOH HOH A . D 4 HOH 143 645 143 HOH HOH A . D 4 HOH 144 646 144 HOH HOH A . D 4 HOH 145 647 145 HOH HOH A . D 4 HOH 146 648 146 HOH HOH A . D 4 HOH 147 649 147 HOH HOH A . D 4 HOH 148 650 148 HOH HOH A . D 4 HOH 149 651 149 HOH HOH A . D 4 HOH 150 652 150 HOH HOH A . D 4 HOH 151 653 151 HOH HOH A . D 4 HOH 152 654 152 HOH HOH A . D 4 HOH 153 655 153 HOH HOH A . D 4 HOH 154 656 154 HOH HOH A . D 4 HOH 155 657 155 HOH HOH A . D 4 HOH 156 658 156 HOH HOH A . D 4 HOH 157 659 157 HOH HOH A . D 4 HOH 158 660 158 HOH HOH A . D 4 HOH 159 661 159 HOH HOH A . D 4 HOH 160 662 160 HOH HOH A . D 4 HOH 161 663 161 HOH HOH A . D 4 HOH 162 664 162 HOH HOH A . D 4 HOH 163 665 163 HOH HOH A . D 4 HOH 164 666 164 HOH HOH A . D 4 HOH 165 667 165 HOH HOH A . D 4 HOH 166 668 166 HOH HOH A . D 4 HOH 167 669 167 HOH HOH A . D 4 HOH 168 670 169 HOH HOH A . D 4 HOH 169 671 170 HOH HOH A . D 4 HOH 170 672 171 HOH HOH A . D 4 HOH 171 673 172 HOH HOH A . D 4 HOH 172 674 173 HOH HOH A . D 4 HOH 173 675 174 HOH HOH A . D 4 HOH 174 676 175 HOH HOH A . D 4 HOH 175 677 176 HOH HOH A . D 4 HOH 176 678 177 HOH HOH A . D 4 HOH 177 679 178 HOH HOH A . D 4 HOH 178 680 179 HOH HOH A . D 4 HOH 179 681 180 HOH HOH A . D 4 HOH 180 682 181 HOH HOH A . D 4 HOH 181 683 182 HOH HOH A . D 4 HOH 182 684 183 HOH HOH A . D 4 HOH 183 685 184 HOH HOH A . D 4 HOH 184 686 185 HOH HOH A . D 4 HOH 185 687 186 HOH HOH A . D 4 HOH 186 688 187 HOH HOH A . D 4 HOH 187 689 188 HOH HOH A . D 4 HOH 188 690 189 HOH HOH A . D 4 HOH 189 691 190 HOH HOH A . D 4 HOH 190 692 191 HOH HOH A . D 4 HOH 191 693 192 HOH HOH A . D 4 HOH 192 694 193 HOH HOH A . D 4 HOH 193 695 194 HOH HOH A . D 4 HOH 194 696 195 HOH HOH A . D 4 HOH 195 697 196 HOH HOH A . D 4 HOH 196 698 197 HOH HOH A . D 4 HOH 197 699 198 HOH HOH A . D 4 HOH 198 700 199 HOH HOH A . D 4 HOH 199 701 200 HOH HOH A . D 4 HOH 200 702 201 HOH HOH A . D 4 HOH 201 703 202 HOH HOH A . D 4 HOH 202 704 203 HOH HOH A . D 4 HOH 203 705 204 HOH HOH A . D 4 HOH 204 706 206 HOH HOH A . D 4 HOH 205 707 207 HOH HOH A . D 4 HOH 206 708 208 HOH HOH A . D 4 HOH 207 709 209 HOH HOH A . D 4 HOH 208 710 210 HOH HOH A . D 4 HOH 209 711 211 HOH HOH A . D 4 HOH 210 712 212 HOH HOH A . D 4 HOH 211 713 213 HOH HOH A . D 4 HOH 212 714 214 HOH HOH A . D 4 HOH 213 715 215 HOH HOH A . D 4 HOH 214 716 216 HOH HOH A . D 4 HOH 215 717 217 HOH HOH A . D 4 HOH 216 718 218 HOH HOH A . D 4 HOH 217 719 219 HOH HOH A . D 4 HOH 218 720 220 HOH HOH A . D 4 HOH 219 721 221 HOH HOH A . D 4 HOH 220 722 222 HOH HOH A . D 4 HOH 221 723 223 HOH HOH A . D 4 HOH 222 724 224 HOH HOH A . D 4 HOH 223 725 225 HOH HOH A . D 4 HOH 224 726 226 HOH HOH A . D 4 HOH 225 727 227 HOH HOH A . D 4 HOH 226 728 228 HOH HOH A . D 4 HOH 227 729 229 HOH HOH A . D 4 HOH 228 730 230 HOH HOH A . D 4 HOH 229 731 231 HOH HOH A . D 4 HOH 230 732 232 HOH HOH A . D 4 HOH 231 733 233 HOH HOH A . D 4 HOH 232 734 234 HOH HOH A . D 4 HOH 233 735 235 HOH HOH A . D 4 HOH 234 736 236 HOH HOH A . D 4 HOH 235 737 237 HOH HOH A . D 4 HOH 236 738 238 HOH HOH A . D 4 HOH 237 739 239 HOH HOH A . D 4 HOH 238 740 240 HOH HOH A . D 4 HOH 239 741 241 HOH HOH A . D 4 HOH 240 742 242 HOH HOH A . D 4 HOH 241 743 243 HOH HOH A . D 4 HOH 242 744 244 HOH HOH A . D 4 HOH 243 745 245 HOH HOH A . D 4 HOH 244 746 246 HOH HOH A . D 4 HOH 245 747 247 HOH HOH A . D 4 HOH 246 748 248 HOH HOH A . D 4 HOH 247 749 249 HOH HOH A . D 4 HOH 248 750 251 HOH HOH A . D 4 HOH 249 751 252 HOH HOH A . D 4 HOH 250 752 253 HOH HOH A . D 4 HOH 251 753 254 HOH HOH A . D 4 HOH 252 754 255 HOH HOH A . D 4 HOH 253 755 256 HOH HOH A . D 4 HOH 254 756 257 HOH HOH A . D 4 HOH 255 757 258 HOH HOH A . D 4 HOH 256 758 259 HOH HOH A . D 4 HOH 257 759 260 HOH HOH A . D 4 HOH 258 760 261 HOH HOH A . D 4 HOH 259 761 262 HOH HOH A . D 4 HOH 260 762 263 HOH HOH A . D 4 HOH 261 763 264 HOH HOH A . D 4 HOH 262 764 265 HOH HOH A . D 4 HOH 263 765 266 HOH HOH A . D 4 HOH 264 766 267 HOH HOH A . D 4 HOH 265 767 268 HOH HOH A . D 4 HOH 266 768 269 HOH HOH A . D 4 HOH 267 769 270 HOH HOH A . D 4 HOH 268 770 271 HOH HOH A . D 4 HOH 269 771 272 HOH HOH A . D 4 HOH 270 772 273 HOH HOH A . D 4 HOH 271 773 274 HOH HOH A . D 4 HOH 272 774 275 HOH HOH A . D 4 HOH 273 775 276 HOH HOH A . D 4 HOH 274 776 277 HOH HOH A . D 4 HOH 275 777 278 HOH HOH A . D 4 HOH 276 778 279 HOH HOH A . D 4 HOH 277 779 280 HOH HOH A . D 4 HOH 278 780 282 HOH HOH A . D 4 HOH 279 781 283 HOH HOH A . D 4 HOH 280 782 284 HOH HOH A . D 4 HOH 281 783 285 HOH HOH A . D 4 HOH 282 784 286 HOH HOH A . D 4 HOH 283 785 287 HOH HOH A . D 4 HOH 284 786 288 HOH HOH A . D 4 HOH 285 787 289 HOH HOH A . D 4 HOH 286 788 290 HOH HOH A . D 4 HOH 287 789 291 HOH HOH A . D 4 HOH 288 790 293 HOH HOH A . D 4 HOH 289 791 294 HOH HOH A . D 4 HOH 290 792 295 HOH HOH A . D 4 HOH 291 793 296 HOH HOH A . D 4 HOH 292 794 297 HOH HOH A . D 4 HOH 293 795 298 HOH HOH A . D 4 HOH 294 796 299 HOH HOH A . D 4 HOH 295 797 300 HOH HOH A . D 4 HOH 296 798 301 HOH HOH A . D 4 HOH 297 799 302 HOH HOH A . D 4 HOH 298 800 303 HOH HOH A . D 4 HOH 299 801 304 HOH HOH A . D 4 HOH 300 802 305 HOH HOH A . D 4 HOH 301 803 306 HOH HOH A . D 4 HOH 302 804 307 HOH HOH A . D 4 HOH 303 805 308 HOH HOH A . D 4 HOH 304 806 309 HOH HOH A . D 4 HOH 305 807 310 HOH HOH A . D 4 HOH 306 808 311 HOH HOH A . D 4 HOH 307 809 312 HOH HOH A . D 4 HOH 308 810 313 HOH HOH A . D 4 HOH 309 811 314 HOH HOH A . D 4 HOH 310 812 315 HOH HOH A . D 4 HOH 311 813 316 HOH HOH A . D 4 HOH 312 814 317 HOH HOH A . D 4 HOH 313 815 318 HOH HOH A . D 4 HOH 314 816 319 HOH HOH A . D 4 HOH 315 817 320 HOH HOH A . D 4 HOH 316 818 321 HOH HOH A . D 4 HOH 317 819 322 HOH HOH A . D 4 HOH 318 820 323 HOH HOH A . D 4 HOH 319 821 324 HOH HOH A . D 4 HOH 320 822 325 HOH HOH A . D 4 HOH 321 823 326 HOH HOH A . D 4 HOH 322 824 327 HOH HOH A . D 4 HOH 323 825 328 HOH HOH A . D 4 HOH 324 826 329 HOH HOH A . D 4 HOH 325 827 330 HOH HOH A . D 4 HOH 326 828 331 HOH HOH A . D 4 HOH 327 829 332 HOH HOH A . D 4 HOH 328 830 333 HOH HOH A . D 4 HOH 329 831 334 HOH HOH A . D 4 HOH 330 832 335 HOH HOH A . D 4 HOH 331 833 336 HOH HOH A . D 4 HOH 332 834 337 HOH HOH A . D 4 HOH 333 835 338 HOH HOH A . D 4 HOH 334 836 339 HOH HOH A . D 4 HOH 335 837 340 HOH HOH A . D 4 HOH 336 838 341 HOH HOH A . D 4 HOH 337 839 342 HOH HOH A . D 4 HOH 338 840 343 HOH HOH A . D 4 HOH 339 841 344 HOH HOH A . D 4 HOH 340 842 345 HOH HOH A . D 4 HOH 341 843 346 HOH HOH A . D 4 HOH 342 844 347 HOH HOH A . D 4 HOH 343 845 348 HOH HOH A . D 4 HOH 344 846 349 HOH HOH A . D 4 HOH 345 847 351 HOH HOH A . D 4 HOH 346 848 352 HOH HOH A . D 4 HOH 347 849 353 HOH HOH A . D 4 HOH 348 850 354 HOH HOH A . D 4 HOH 349 851 355 HOH HOH A . D 4 HOH 350 852 356 HOH HOH A . D 4 HOH 351 853 357 HOH HOH A . D 4 HOH 352 854 358 HOH HOH A . D 4 HOH 353 855 359 HOH HOH A . D 4 HOH 354 856 360 HOH HOH A . D 4 HOH 355 857 361 HOH HOH A . D 4 HOH 356 858 362 HOH HOH A . D 4 HOH 357 859 363 HOH HOH A . D 4 HOH 358 860 364 HOH HOH A . D 4 HOH 359 861 365 HOH HOH A . D 4 HOH 360 862 366 HOH HOH A . D 4 HOH 361 863 367 HOH HOH A . D 4 HOH 362 864 368 HOH HOH A . D 4 HOH 363 865 369 HOH HOH A . D 4 HOH 364 866 371 HOH HOH A . D 4 HOH 365 867 373 HOH HOH A . D 4 HOH 366 868 375 HOH HOH A . D 4 HOH 367 869 376 HOH HOH A . D 4 HOH 368 870 377 HOH HOH A . D 4 HOH 369 871 378 HOH HOH A . D 4 HOH 370 872 379 HOH HOH A . D 4 HOH 371 873 380 HOH HOH A . D 4 HOH 372 874 382 HOH HOH A . D 4 HOH 373 875 383 HOH HOH A . D 4 HOH 374 876 384 HOH HOH A . D 4 HOH 375 877 385 HOH HOH A . D 4 HOH 376 878 386 HOH HOH A . D 4 HOH 377 879 387 HOH HOH A . D 4 HOH 378 880 388 HOH HOH A . D 4 HOH 379 881 389 HOH HOH A . D 4 HOH 380 882 390 HOH HOH A . D 4 HOH 381 883 391 HOH HOH A . D 4 HOH 382 884 392 HOH HOH A . D 4 HOH 383 885 393 HOH HOH A . D 4 HOH 384 886 394 HOH HOH A . D 4 HOH 385 887 395 HOH HOH A . D 4 HOH 386 888 396 HOH HOH A . D 4 HOH 387 889 397 HOH HOH A . D 4 HOH 388 890 398 HOH HOH A . D 4 HOH 389 891 399 HOH HOH A . D 4 HOH 390 892 400 HOH HOH A . D 4 HOH 391 893 401 HOH HOH A . D 4 HOH 392 894 402 HOH HOH A . D 4 HOH 393 895 403 HOH HOH A . D 4 HOH 394 896 404 HOH HOH A . D 4 HOH 395 897 405 HOH HOH A . D 4 HOH 396 898 406 HOH HOH A . D 4 HOH 397 899 407 HOH HOH A . D 4 HOH 398 900 408 HOH HOH A . D 4 HOH 399 901 409 HOH HOH A . D 4 HOH 400 902 410 HOH HOH A . D 4 HOH 401 903 411 HOH HOH A . D 4 HOH 402 904 412 HOH HOH A . D 4 HOH 403 905 413 HOH HOH A . D 4 HOH 404 906 414 HOH HOH A . D 4 HOH 405 907 415 HOH HOH A . D 4 HOH 406 908 416 HOH HOH A . D 4 HOH 407 909 417 HOH HOH A . D 4 HOH 408 910 418 HOH HOH A . D 4 HOH 409 911 419 HOH HOH A . D 4 HOH 410 912 420 HOH HOH A . D 4 HOH 411 913 421 HOH HOH A . D 4 HOH 412 914 422 HOH HOH A . D 4 HOH 413 915 423 HOH HOH A . D 4 HOH 414 916 424 HOH HOH A . D 4 HOH 415 917 425 HOH HOH A . D 4 HOH 416 918 426 HOH HOH A . D 4 HOH 417 919 427 HOH HOH A . D 4 HOH 418 920 428 HOH HOH A . D 4 HOH 419 921 430 HOH HOH A . D 4 HOH 420 922 431 HOH HOH A . D 4 HOH 421 923 432 HOH HOH A . D 4 HOH 422 924 433 HOH HOH A . D 4 HOH 423 925 435 HOH HOH A . D 4 HOH 424 926 436 HOH HOH A . D 4 HOH 425 927 437 HOH HOH A . D 4 HOH 426 928 438 HOH HOH A . D 4 HOH 427 929 439 HOH HOH A . D 4 HOH 428 930 440 HOH HOH A . D 4 HOH 429 931 441 HOH HOH A . D 4 HOH 430 932 442 HOH HOH A . D 4 HOH 431 933 443 HOH HOH A . D 4 HOH 432 934 444 HOH HOH A . D 4 HOH 433 935 445 HOH HOH A . D 4 HOH 434 936 446 HOH HOH A . D 4 HOH 435 937 447 HOH HOH A . D 4 HOH 436 938 448 HOH HOH A . D 4 HOH 437 939 449 HOH HOH A . D 4 HOH 438 940 450 HOH HOH A . D 4 HOH 439 941 451 HOH HOH A . D 4 HOH 440 942 452 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 278 ? CD ? A GLU 231 CD 2 1 Y 0 A GLU 278 ? OE1 ? A GLU 231 OE1 3 1 Y 0 A GLU 278 ? OE2 ? A GLU 231 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1XDN _cell.length_a 44.911 _cell.length_b 58.579 _cell.length_c 52.984 _cell.angle_alpha 90.00 _cell.angle_beta 100.23 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1XDN _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1XDN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 45.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, magnesium chloride, Tris, ATP, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-12-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97885 1.0 2 0.97899 1.0 3 0.96112 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97885, 0.97899, 0.96112' # _reflns.entry_id 1XDN _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 95711 _reflns.percent_possible_obs 86.8 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 33.8 _reflns.B_iso_Wilson_estimate 7.293 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 86.8 _reflns_shell.Rmerge_I_obs 0.064 _reflns_shell.pdbx_Rsym_value 0.064 _reflns_shell.meanI_over_sigI_obs 33.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 95711 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1XDN _refine.ls_number_reflns_obs 78835 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 98.30 _refine.ls_R_factor_obs 0.12923 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12822 _refine.ls_R_factor_R_free 0.14805 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 4149 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.972 _refine.B_iso_mean 9.403 _refine.aniso_B[1][1] -0.22 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.28 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.12 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.034 _refine.pdbx_overall_ESU_R_Free 0.033 _refine.overall_SU_ML 0.017 _refine.overall_SU_B 0.349 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2119 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 440 _refine_hist.number_atoms_total 2591 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 2206 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1976 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.420 1.978 ? 2993 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.784 3.000 ? 4606 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.763 5.000 ? 264 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 2428 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.017 0.020 ? 457 'X-RAY DIFFRACTION' ? r_nbd_refined 0.220 0.200 ? 423 'X-RAY DIFFRACTION' ? r_nbd_other 0.250 0.200 ? 2349 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.084 0.200 ? 1304 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.169 0.200 ? 304 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.119 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.217 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.177 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.192 1.500 ? 1319 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.915 2.000 ? 2128 'X-RAY DIFFRACTION' ? r_scbond_it 2.829 3.000 ? 887 'X-RAY DIFFRACTION' ? r_scangle_it 4.258 4.500 ? 865 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.number_reflns_R_work 4798 _refine_ls_shell.R_factor_R_work 0.117 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.131 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 260 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1XDN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XDN _struct.title 'High resolution crystal structure of an editosome enzyme from trypanosoma brucei: RNA editing ligase 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XDN _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'RNA editing, Ligase, Trypanosoma brucei' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAG27062 _struct_ref.pdbx_db_accession 11067037 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DQSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDE FTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELHFFAFD IKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVIRHV RRGDPAVEKHNVSTIIKLRCSSFMELKHPGKQKE ; _struct_ref.pdbx_align_begin 51 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1XDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 277 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 11067037 _struct_ref_seq.db_align_beg 51 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 324 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 51 _struct_ref_seq.pdbx_auth_seq_align_end 324 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1XDN GLY A 1 ? GB 11067037 ? ? 'cloning artifact' 48 1 1 1XDN HIS A 2 ? GB 11067037 ? ? 'cloning artifact' 49 2 1 1XDN MET A 3 ? GB 11067037 ? ? 'cloning artifact' 50 3 1 1XDN MSE A 68 ? GB 11067037 MET 115 'modified residue' 115 4 1 1XDN MSE A 216 ? GB 11067037 MET 263 'modified residue' 263 5 1 1XDN MSE A 267 ? GB 11067037 MET 314 'modified residue' 314 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? SER A 28 ? SER A 65 SER A 75 1 ? 11 HELX_P HELX_P2 2 GLY A 29 ? GLN A 33 ? GLY A 76 GLN A 80 5 ? 5 HELX_P HELX_P3 3 GLY A 76 ? ILE A 79 ? GLY A 123 ILE A 126 5 ? 4 HELX_P HELX_P4 4 LEU A 80 ? GLY A 100 ? LEU A 127 GLY A 147 1 ? 21 HELX_P HELX_P5 5 ALA A 141 ? VAL A 143 ? ALA A 188 VAL A 190 5 ? 3 HELX_P HELX_P6 6 ALA A 171 ? GLU A 173 ? ALA A 218 GLU A 220 5 ? 3 HELX_P HELX_P7 7 GLY A 179 ? LYS A 189 ? GLY A 226 LYS A 236 1 ? 11 HELX_P HELX_P8 8 THR A 203 ? ALA A 209 ? THR A 250 ALA A 256 1 ? 7 HELX_P HELX_P9 9 ASP A 211 ? PHE A 215 ? ASP A 258 PHE A 262 5 ? 5 HELX_P HELX_P10 10 PRO A 218 ? LEU A 223 ? PRO A 265 LEU A 270 1 ? 6 HELX_P HELX_P11 11 ASP A 247 ? LYS A 252 ? ASP A 294 LYS A 299 1 ? 6 HELX_P HELX_P12 12 CYS A 263 ? LEU A 269 ? CYS A 310 LEU A 316 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 67 C ? ? ? 1_555 A MSE 68 N ? ? A ILE 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 68 C ? ? ? 1_555 A ASP 69 N ? ? A MSE 115 A ASP 116 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A PHE 215 C ? ? ? 1_555 A MSE 216 N ? ? A PHE 262 A MSE 263 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 216 C ? ? ? 1_555 A THR 217 N ? ? A MSE 263 A THR 264 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A PHE 266 C ? ? ? 1_555 A MSE 267 N ? ? A PHE 313 A MSE 314 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 267 C ? ? ? 1_555 A GLU 268 N ? ? A MSE 314 A GLU 315 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? C ATP . O1G ? ? ? 1_555 B MG . MG ? ? A ATP 501 A MG 502 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc2 metalc ? ? C ATP . O2B ? ? ? 1_555 B MG . MG ? ? A ATP 501 A MG 502 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 502 A HOH 514 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 502 A HOH 520 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 502 A HOH 528 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 502 A HOH 530 1_555 ? ? ? ? ? ? ? 2.039 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1G ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O2B ? C ATP . ? A ATP 501 ? 1_555 86.6 ? 2 O1G ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 514 ? 1_555 89.5 ? 3 O2B ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 514 ? 1_555 173.3 ? 4 O1G ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 520 ? 1_555 96.9 ? 5 O2B ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 520 ? 1_555 90.2 ? 6 O ? D HOH . ? A HOH 514 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 520 ? 1_555 84.9 ? 7 O1G ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 528 ? 1_555 177.6 ? 8 O2B ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 528 ? 1_555 94.7 ? 9 O ? D HOH . ? A HOH 514 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 528 ? 1_555 89.4 ? 10 O ? D HOH . ? A HOH 520 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 528 ? 1_555 85.1 ? 11 O1G ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 530 ? 1_555 90.8 ? 12 O2B ? C ATP . ? A ATP 501 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 530 ? 1_555 95.6 ? 13 O ? D HOH . ? A HOH 514 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 530 ? 1_555 89.9 ? 14 O ? D HOH . ? A HOH 520 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 530 ? 1_555 170.6 ? 15 O ? D HOH . ? A HOH 528 ? 1_555 MG ? B MG . ? A MG 502 ? 1_555 O ? D HOH . ? A HOH 530 ? 1_555 87.1 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 68 ? . . . . MSE A 115 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 216 ? . . . . MSE A 263 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 267 ? . . . . MSE A 314 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 150 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 197 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 151 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 198 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 6 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 200 ? GLY A 202 ? VAL A 247 GLY A 249 A 2 TRP A 35 ? LYS A 40 ? TRP A 82 LYS A 87 A 3 GLY A 237 ? HIS A 242 ? GLY A 284 HIS A 289 A 4 ILE A 258 ? ARG A 262 ? ILE A 305 ARG A 309 B 1 GLY A 66 ? ILE A 67 ? GLY A 113 ILE A 114 B 2 HIS A 56 ? LYS A 63 ? HIS A 103 LYS A 110 B 3 THR A 44 ? GLN A 53 ? THR A 91 GLN A 100 B 4 ARG A 106 ? LYS A 117 ? ARG A 153 LYS A 164 B 5 SER A 154 ? SER A 167 ? SER A 201 SER A 214 B 6 PHE A 175 ? LEU A 177 ? PHE A 222 LEU A 224 C 1 GLY A 66 ? ILE A 67 ? GLY A 113 ILE A 114 C 2 HIS A 56 ? LYS A 63 ? HIS A 103 LYS A 110 C 3 THR A 44 ? GLN A 53 ? THR A 91 GLN A 100 C 4 ARG A 106 ? LYS A 117 ? ARG A 153 LYS A 164 C 5 SER A 154 ? SER A 167 ? SER A 201 SER A 214 C 6 LEU A 194 ? TYR A 195 ? LEU A 241 TYR A 242 D 1 TRP A 129 ? THR A 131 ? TRP A 176 THR A 178 D 2 LYS A 137 ? PRO A 139 ? LYS A 184 PRO A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 202 ? O GLY A 249 N TRP A 35 ? N TRP A 82 A 2 3 N CYS A 38 ? N CYS A 85 O VAL A 239 ? O VAL A 286 A 3 4 N ILE A 240 ? N ILE A 287 O ILE A 259 ? O ILE A 306 B 1 2 O GLY A 66 ? O GLY A 113 N LYS A 63 ? N LYS A 110 B 2 3 O HIS A 56 ? O HIS A 103 N GLN A 53 ? N GLN A 100 B 3 4 N THR A 44 ? N THR A 91 O LEU A 113 ? O LEU A 160 B 4 5 N VAL A 108 ? N VAL A 155 O LYS A 165 ? O LYS A 212 B 5 6 N TYR A 166 ? N TYR A 213 O VAL A 176 ? O VAL A 223 C 1 2 O GLY A 66 ? O GLY A 113 N LYS A 63 ? N LYS A 110 C 2 3 O HIS A 56 ? O HIS A 103 N GLN A 53 ? N GLN A 100 C 3 4 N THR A 44 ? N THR A 91 O LEU A 113 ? O LEU A 160 C 4 5 N VAL A 108 ? N VAL A 155 O LYS A 165 ? O LYS A 212 C 5 6 N ALA A 161 ? N ALA A 208 O LEU A 194 ? O LEU A 241 D 1 2 N CYS A 130 ? N CYS A 177 O PHE A 138 ? O PHE A 185 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 502 ? 5 'BINDING SITE FOR RESIDUE MG A 502' AC2 Software A ATP 501 ? 27 'BINDING SITE FOR RESIDUE ATP A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ATP C . ? ATP A 501 . ? 1_555 ? 2 AC1 5 HOH D . ? HOH A 514 . ? 1_555 ? 3 AC1 5 HOH D . ? HOH A 520 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 528 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 530 . ? 1_555 ? 6 AC2 27 TYR A 11 ? TYR A 58 . ? 1_555 ? 7 AC2 27 ILE A 12 ? ILE A 59 . ? 1_555 ? 8 AC2 27 GLU A 13 ? GLU A 60 . ? 1_555 ? 9 AC2 27 ILE A 14 ? ILE A 61 . ? 1_555 ? 10 AC2 27 GLU A 39 ? GLU A 86 . ? 1_555 ? 11 AC2 27 LYS A 40 ? LYS A 87 . ? 1_555 ? 12 AC2 27 VAL A 41 ? VAL A 88 . ? 1_555 ? 13 AC2 27 ASN A 45 ? ASN A 92 . ? 1_555 ? 14 AC2 27 ARG A 64 ? ARG A 111 . ? 1_555 ? 15 AC2 27 GLU A 112 ? GLU A 159 . ? 1_555 ? 16 AC2 27 PHE A 162 ? PHE A 209 . ? 1_555 ? 17 AC2 27 VAL A 239 ? VAL A 286 . ? 1_555 ? 18 AC2 27 LYS A 260 ? LYS A 307 . ? 1_555 ? 19 AC2 27 ARG A 262 ? ARG A 309 . ? 1_555 ? 20 AC2 27 MG B . ? MG A 502 . ? 1_555 ? 21 AC2 27 HOH D . ? HOH A 514 . ? 1_555 ? 22 AC2 27 HOH D . ? HOH A 520 . ? 1_555 ? 23 AC2 27 HOH D . ? HOH A 528 . ? 1_555 ? 24 AC2 27 HOH D . ? HOH A 530 . ? 1_555 ? 25 AC2 27 HOH D . ? HOH A 536 . ? 1_555 ? 26 AC2 27 HOH D . ? HOH A 587 . ? 1_555 ? 27 AC2 27 HOH D . ? HOH A 634 . ? 1_555 ? 28 AC2 27 HOH D . ? HOH A 650 . ? 1_555 ? 29 AC2 27 HOH D . ? HOH A 777 . ? 1_555 ? 30 AC2 27 HOH D . ? HOH A 829 . ? 1_555 ? 31 AC2 27 HOH D . ? HOH A 871 . ? 1_555 ? 32 AC2 27 HOH D . ? HOH A 886 . ? 1_555 ? # _pdbx_entry_details.entry_id 1XDN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 278 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 677 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 314 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 314 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 4.314 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation 2.364 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A MSE 314 ? ? CG A MSE 314 ? ? SE A MSE 314 ? B 89.16 112.70 -23.54 3.00 N 2 1 CG A MSE 314 ? ? SE A MSE 314 ? B CE A MSE 314 ? B 55.86 98.90 -43.04 2.20 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 165 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -160.96 _pdbx_validate_torsion.psi 96.21 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 68 A MSE 115 ? MET SELENOMETHIONINE 2 A MSE 216 A MSE 263 ? MET SELENOMETHIONINE 3 A MSE 267 A MSE 314 ? MET SELENOMETHIONINE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 48 ? A GLY 1 2 1 Y 1 A HIS 49 ? A HIS 2 3 1 Y 1 A MET 50 ? A MET 3 4 1 Y 1 A ASP 51 ? A ASP 4 5 1 Y 1 A LYS 317 ? A LYS 270 6 1 Y 1 A HIS 318 ? A HIS 271 7 1 Y 1 A PRO 319 ? A PRO 272 8 1 Y 1 A GLY 320 ? A GLY 273 9 1 Y 1 A LYS 321 ? A LYS 274 10 1 Y 1 A GLN 322 ? A GLN 275 11 1 Y 1 A LYS 323 ? A LYS 276 12 1 Y 1 A GLU 324 ? A GLU 277 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 ATP PG P N N 74 ATP O1G O N N 75 ATP O2G O N N 76 ATP O3G O N N 77 ATP PB P N R 78 ATP O1B O N N 79 ATP O2B O N N 80 ATP O3B O N N 81 ATP PA P N R 82 ATP O1A O N N 83 ATP O2A O N N 84 ATP O3A O N N 85 ATP "O5'" O N N 86 ATP "C5'" C N N 87 ATP "C4'" C N R 88 ATP "O4'" O N N 89 ATP "C3'" C N S 90 ATP "O3'" O N N 91 ATP "C2'" C N R 92 ATP "O2'" O N N 93 ATP "C1'" C N R 94 ATP N9 N Y N 95 ATP C8 C Y N 96 ATP N7 N Y N 97 ATP C5 C Y N 98 ATP C6 C Y N 99 ATP N6 N N N 100 ATP N1 N Y N 101 ATP C2 C Y N 102 ATP N3 N Y N 103 ATP C4 C Y N 104 ATP HOG2 H N N 105 ATP HOG3 H N N 106 ATP HOB2 H N N 107 ATP HOA2 H N N 108 ATP "H5'1" H N N 109 ATP "H5'2" H N N 110 ATP "H4'" H N N 111 ATP "H3'" H N N 112 ATP "HO3'" H N N 113 ATP "H2'" H N N 114 ATP "HO2'" H N N 115 ATP "H1'" H N N 116 ATP H8 H N N 117 ATP HN61 H N N 118 ATP HN62 H N N 119 ATP H2 H N N 120 CYS N N N N 121 CYS CA C N R 122 CYS C C N N 123 CYS O O N N 124 CYS CB C N N 125 CYS SG S N N 126 CYS OXT O N N 127 CYS H H N N 128 CYS H2 H N N 129 CYS HA H N N 130 CYS HB2 H N N 131 CYS HB3 H N N 132 CYS HG H N N 133 CYS HXT H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 MG MG MG N N 297 MSE N N N N 298 MSE CA C N S 299 MSE C C N N 300 MSE O O N N 301 MSE OXT O N N 302 MSE CB C N N 303 MSE CG C N N 304 MSE SE SE N N 305 MSE CE C N N 306 MSE H H N N 307 MSE H2 H N N 308 MSE HA H N N 309 MSE HXT H N N 310 MSE HB2 H N N 311 MSE HB3 H N N 312 MSE HG2 H N N 313 MSE HG3 H N N 314 MSE HE1 H N N 315 MSE HE2 H N N 316 MSE HE3 H N N 317 PHE N N N N 318 PHE CA C N S 319 PHE C C N N 320 PHE O O N N 321 PHE CB C N N 322 PHE CG C Y N 323 PHE CD1 C Y N 324 PHE CD2 C Y N 325 PHE CE1 C Y N 326 PHE CE2 C Y N 327 PHE CZ C Y N 328 PHE OXT O N N 329 PHE H H N N 330 PHE H2 H N N 331 PHE HA H N N 332 PHE HB2 H N N 333 PHE HB3 H N N 334 PHE HD1 H N N 335 PHE HD2 H N N 336 PHE HE1 H N N 337 PHE HE2 H N N 338 PHE HZ H N N 339 PHE HXT H N N 340 PRO N N N N 341 PRO CA C N S 342 PRO C C N N 343 PRO O O N N 344 PRO CB C N N 345 PRO CG C N N 346 PRO CD C N N 347 PRO OXT O N N 348 PRO H H N N 349 PRO HA H N N 350 PRO HB2 H N N 351 PRO HB3 H N N 352 PRO HG2 H N N 353 PRO HG3 H N N 354 PRO HD2 H N N 355 PRO HD3 H N N 356 PRO HXT H N N 357 SER N N N N 358 SER CA C N S 359 SER C C N N 360 SER O O N N 361 SER CB C N N 362 SER OG O N N 363 SER OXT O N N 364 SER H H N N 365 SER H2 H N N 366 SER HA H N N 367 SER HB2 H N N 368 SER HB3 H N N 369 SER HG H N N 370 SER HXT H N N 371 THR N N N N 372 THR CA C N S 373 THR C C N N 374 THR O O N N 375 THR CB C N R 376 THR OG1 O N N 377 THR CG2 C N N 378 THR OXT O N N 379 THR H H N N 380 THR H2 H N N 381 THR HA H N N 382 THR HB H N N 383 THR HG1 H N N 384 THR HG21 H N N 385 THR HG22 H N N 386 THR HG23 H N N 387 THR HXT H N N 388 TRP N N N N 389 TRP CA C N S 390 TRP C C N N 391 TRP O O N N 392 TRP CB C N N 393 TRP CG C Y N 394 TRP CD1 C Y N 395 TRP CD2 C Y N 396 TRP NE1 N Y N 397 TRP CE2 C Y N 398 TRP CE3 C Y N 399 TRP CZ2 C Y N 400 TRP CZ3 C Y N 401 TRP CH2 C Y N 402 TRP OXT O N N 403 TRP H H N N 404 TRP H2 H N N 405 TRP HA H N N 406 TRP HB2 H N N 407 TRP HB3 H N N 408 TRP HD1 H N N 409 TRP HE1 H N N 410 TRP HE3 H N N 411 TRP HZ2 H N N 412 TRP HZ3 H N N 413 TRP HH2 H N N 414 TRP HXT H N N 415 TYR N N N N 416 TYR CA C N S 417 TYR C C N N 418 TYR O O N N 419 TYR CB C N N 420 TYR CG C Y N 421 TYR CD1 C Y N 422 TYR CD2 C Y N 423 TYR CE1 C Y N 424 TYR CE2 C Y N 425 TYR CZ C Y N 426 TYR OH O N N 427 TYR OXT O N N 428 TYR H H N N 429 TYR H2 H N N 430 TYR HA H N N 431 TYR HB2 H N N 432 TYR HB3 H N N 433 TYR HD1 H N N 434 TYR HD2 H N N 435 TYR HE1 H N N 436 TYR HE2 H N N 437 TYR HH H N N 438 TYR HXT H N N 439 VAL N N N N 440 VAL CA C N S 441 VAL C C N N 442 VAL O O N N 443 VAL CB C N N 444 VAL CG1 C N N 445 VAL CG2 C N N 446 VAL OXT O N N 447 VAL H H N N 448 VAL H2 H N N 449 VAL HA H N N 450 VAL HB H N N 451 VAL HG11 H N N 452 VAL HG12 H N N 453 VAL HG13 H N N 454 VAL HG21 H N N 455 VAL HG22 H N N 456 VAL HG23 H N N 457 VAL HXT H N N 458 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 ATP PG O1G doub N N 70 ATP PG O2G sing N N 71 ATP PG O3G sing N N 72 ATP PG O3B sing N N 73 ATP O2G HOG2 sing N N 74 ATP O3G HOG3 sing N N 75 ATP PB O1B doub N N 76 ATP PB O2B sing N N 77 ATP PB O3B sing N N 78 ATP PB O3A sing N N 79 ATP O2B HOB2 sing N N 80 ATP PA O1A doub N N 81 ATP PA O2A sing N N 82 ATP PA O3A sing N N 83 ATP PA "O5'" sing N N 84 ATP O2A HOA2 sing N N 85 ATP "O5'" "C5'" sing N N 86 ATP "C5'" "C4'" sing N N 87 ATP "C5'" "H5'1" sing N N 88 ATP "C5'" "H5'2" sing N N 89 ATP "C4'" "O4'" sing N N 90 ATP "C4'" "C3'" sing N N 91 ATP "C4'" "H4'" sing N N 92 ATP "O4'" "C1'" sing N N 93 ATP "C3'" "O3'" sing N N 94 ATP "C3'" "C2'" sing N N 95 ATP "C3'" "H3'" sing N N 96 ATP "O3'" "HO3'" sing N N 97 ATP "C2'" "O2'" sing N N 98 ATP "C2'" "C1'" sing N N 99 ATP "C2'" "H2'" sing N N 100 ATP "O2'" "HO2'" sing N N 101 ATP "C1'" N9 sing N N 102 ATP "C1'" "H1'" sing N N 103 ATP N9 C8 sing Y N 104 ATP N9 C4 sing Y N 105 ATP C8 N7 doub Y N 106 ATP C8 H8 sing N N 107 ATP N7 C5 sing Y N 108 ATP C5 C6 sing Y N 109 ATP C5 C4 doub Y N 110 ATP C6 N6 sing N N 111 ATP C6 N1 doub Y N 112 ATP N6 HN61 sing N N 113 ATP N6 HN62 sing N N 114 ATP N1 C2 sing Y N 115 ATP C2 N3 doub Y N 116 ATP C2 H2 sing N N 117 ATP N3 C4 sing Y N 118 CYS N CA sing N N 119 CYS N H sing N N 120 CYS N H2 sing N N 121 CYS CA C sing N N 122 CYS CA CB sing N N 123 CYS CA HA sing N N 124 CYS C O doub N N 125 CYS C OXT sing N N 126 CYS CB SG sing N N 127 CYS CB HB2 sing N N 128 CYS CB HB3 sing N N 129 CYS SG HG sing N N 130 CYS OXT HXT sing N N 131 GLN N CA sing N N 132 GLN N H sing N N 133 GLN N H2 sing N N 134 GLN CA C sing N N 135 GLN CA CB sing N N 136 GLN CA HA sing N N 137 GLN C O doub N N 138 GLN C OXT sing N N 139 GLN CB CG sing N N 140 GLN CB HB2 sing N N 141 GLN CB HB3 sing N N 142 GLN CG CD sing N N 143 GLN CG HG2 sing N N 144 GLN CG HG3 sing N N 145 GLN CD OE1 doub N N 146 GLN CD NE2 sing N N 147 GLN NE2 HE21 sing N N 148 GLN NE2 HE22 sing N N 149 GLN OXT HXT sing N N 150 GLU N CA sing N N 151 GLU N H sing N N 152 GLU N H2 sing N N 153 GLU CA C sing N N 154 GLU CA CB sing N N 155 GLU CA HA sing N N 156 GLU C O doub N N 157 GLU C OXT sing N N 158 GLU CB CG sing N N 159 GLU CB HB2 sing N N 160 GLU CB HB3 sing N N 161 GLU CG CD sing N N 162 GLU CG HG2 sing N N 163 GLU CG HG3 sing N N 164 GLU CD OE1 doub N N 165 GLU CD OE2 sing N N 166 GLU OE2 HE2 sing N N 167 GLU OXT HXT sing N N 168 GLY N CA sing N N 169 GLY N H sing N N 170 GLY N H2 sing N N 171 GLY CA C sing N N 172 GLY CA HA2 sing N N 173 GLY CA HA3 sing N N 174 GLY C O doub N N 175 GLY C OXT sing N N 176 GLY OXT HXT sing N N 177 HIS N CA sing N N 178 HIS N H sing N N 179 HIS N H2 sing N N 180 HIS CA C sing N N 181 HIS CA CB sing N N 182 HIS CA HA sing N N 183 HIS C O doub N N 184 HIS C OXT sing N N 185 HIS CB CG sing N N 186 HIS CB HB2 sing N N 187 HIS CB HB3 sing N N 188 HIS CG ND1 sing Y N 189 HIS CG CD2 doub Y N 190 HIS ND1 CE1 doub Y N 191 HIS ND1 HD1 sing N N 192 HIS CD2 NE2 sing Y N 193 HIS CD2 HD2 sing N N 194 HIS CE1 NE2 sing Y N 195 HIS CE1 HE1 sing N N 196 HIS NE2 HE2 sing N N 197 HIS OXT HXT sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 ILE N CA sing N N 201 ILE N H sing N N 202 ILE N H2 sing N N 203 ILE CA C sing N N 204 ILE CA CB sing N N 205 ILE CA HA sing N N 206 ILE C O doub N N 207 ILE C OXT sing N N 208 ILE CB CG1 sing N N 209 ILE CB CG2 sing N N 210 ILE CB HB sing N N 211 ILE CG1 CD1 sing N N 212 ILE CG1 HG12 sing N N 213 ILE CG1 HG13 sing N N 214 ILE CG2 HG21 sing N N 215 ILE CG2 HG22 sing N N 216 ILE CG2 HG23 sing N N 217 ILE CD1 HD11 sing N N 218 ILE CD1 HD12 sing N N 219 ILE CD1 HD13 sing N N 220 ILE OXT HXT sing N N 221 LEU N CA sing N N 222 LEU N H sing N N 223 LEU N H2 sing N N 224 LEU CA C sing N N 225 LEU CA CB sing N N 226 LEU CA HA sing N N 227 LEU C O doub N N 228 LEU C OXT sing N N 229 LEU CB CG sing N N 230 LEU CB HB2 sing N N 231 LEU CB HB3 sing N N 232 LEU CG CD1 sing N N 233 LEU CG CD2 sing N N 234 LEU CG HG sing N N 235 LEU CD1 HD11 sing N N 236 LEU CD1 HD12 sing N N 237 LEU CD1 HD13 sing N N 238 LEU CD2 HD21 sing N N 239 LEU CD2 HD22 sing N N 240 LEU CD2 HD23 sing N N 241 LEU OXT HXT sing N N 242 LYS N CA sing N N 243 LYS N H sing N N 244 LYS N H2 sing N N 245 LYS CA C sing N N 246 LYS CA CB sing N N 247 LYS CA HA sing N N 248 LYS C O doub N N 249 LYS C OXT sing N N 250 LYS CB CG sing N N 251 LYS CB HB2 sing N N 252 LYS CB HB3 sing N N 253 LYS CG CD sing N N 254 LYS CG HG2 sing N N 255 LYS CG HG3 sing N N 256 LYS CD CE sing N N 257 LYS CD HD2 sing N N 258 LYS CD HD3 sing N N 259 LYS CE NZ sing N N 260 LYS CE HE2 sing N N 261 LYS CE HE3 sing N N 262 LYS NZ HZ1 sing N N 263 LYS NZ HZ2 sing N N 264 LYS NZ HZ3 sing N N 265 LYS OXT HXT sing N N 266 MET N CA sing N N 267 MET N H sing N N 268 MET N H2 sing N N 269 MET CA C sing N N 270 MET CA CB sing N N 271 MET CA HA sing N N 272 MET C O doub N N 273 MET C OXT sing N N 274 MET CB CG sing N N 275 MET CB HB2 sing N N 276 MET CB HB3 sing N N 277 MET CG SD sing N N 278 MET CG HG2 sing N N 279 MET CG HG3 sing N N 280 MET SD CE sing N N 281 MET CE HE1 sing N N 282 MET CE HE2 sing N N 283 MET CE HE3 sing N N 284 MET OXT HXT sing N N 285 MSE N CA sing N N 286 MSE N H sing N N 287 MSE N H2 sing N N 288 MSE CA C sing N N 289 MSE CA CB sing N N 290 MSE CA HA sing N N 291 MSE C O doub N N 292 MSE C OXT sing N N 293 MSE OXT HXT sing N N 294 MSE CB CG sing N N 295 MSE CB HB2 sing N N 296 MSE CB HB3 sing N N 297 MSE CG SE sing N N 298 MSE CG HG2 sing N N 299 MSE CG HG3 sing N N 300 MSE SE CE sing N N 301 MSE CE HE1 sing N N 302 MSE CE HE2 sing N N 303 MSE CE HE3 sing N N 304 PHE N CA sing N N 305 PHE N H sing N N 306 PHE N H2 sing N N 307 PHE CA C sing N N 308 PHE CA CB sing N N 309 PHE CA HA sing N N 310 PHE C O doub N N 311 PHE C OXT sing N N 312 PHE CB CG sing N N 313 PHE CB HB2 sing N N 314 PHE CB HB3 sing N N 315 PHE CG CD1 doub Y N 316 PHE CG CD2 sing Y N 317 PHE CD1 CE1 sing Y N 318 PHE CD1 HD1 sing N N 319 PHE CD2 CE2 doub Y N 320 PHE CD2 HD2 sing N N 321 PHE CE1 CZ doub Y N 322 PHE CE1 HE1 sing N N 323 PHE CE2 CZ sing Y N 324 PHE CE2 HE2 sing N N 325 PHE CZ HZ sing N N 326 PHE OXT HXT sing N N 327 PRO N CA sing N N 328 PRO N CD sing N N 329 PRO N H sing N N 330 PRO CA C sing N N 331 PRO CA CB sing N N 332 PRO CA HA sing N N 333 PRO C O doub N N 334 PRO C OXT sing N N 335 PRO CB CG sing N N 336 PRO CB HB2 sing N N 337 PRO CB HB3 sing N N 338 PRO CG CD sing N N 339 PRO CG HG2 sing N N 340 PRO CG HG3 sing N N 341 PRO CD HD2 sing N N 342 PRO CD HD3 sing N N 343 PRO OXT HXT sing N N 344 SER N CA sing N N 345 SER N H sing N N 346 SER N H2 sing N N 347 SER CA C sing N N 348 SER CA CB sing N N 349 SER CA HA sing N N 350 SER C O doub N N 351 SER C OXT sing N N 352 SER CB OG sing N N 353 SER CB HB2 sing N N 354 SER CB HB3 sing N N 355 SER OG HG sing N N 356 SER OXT HXT sing N N 357 THR N CA sing N N 358 THR N H sing N N 359 THR N H2 sing N N 360 THR CA C sing N N 361 THR CA CB sing N N 362 THR CA HA sing N N 363 THR C O doub N N 364 THR C OXT sing N N 365 THR CB OG1 sing N N 366 THR CB CG2 sing N N 367 THR CB HB sing N N 368 THR OG1 HG1 sing N N 369 THR CG2 HG21 sing N N 370 THR CG2 HG22 sing N N 371 THR CG2 HG23 sing N N 372 THR OXT HXT sing N N 373 TRP N CA sing N N 374 TRP N H sing N N 375 TRP N H2 sing N N 376 TRP CA C sing N N 377 TRP CA CB sing N N 378 TRP CA HA sing N N 379 TRP C O doub N N 380 TRP C OXT sing N N 381 TRP CB CG sing N N 382 TRP CB HB2 sing N N 383 TRP CB HB3 sing N N 384 TRP CG CD1 doub Y N 385 TRP CG CD2 sing Y N 386 TRP CD1 NE1 sing Y N 387 TRP CD1 HD1 sing N N 388 TRP CD2 CE2 doub Y N 389 TRP CD2 CE3 sing Y N 390 TRP NE1 CE2 sing Y N 391 TRP NE1 HE1 sing N N 392 TRP CE2 CZ2 sing Y N 393 TRP CE3 CZ3 doub Y N 394 TRP CE3 HE3 sing N N 395 TRP CZ2 CH2 doub Y N 396 TRP CZ2 HZ2 sing N N 397 TRP CZ3 CH2 sing Y N 398 TRP CZ3 HZ3 sing N N 399 TRP CH2 HH2 sing N N 400 TRP OXT HXT sing N N 401 TYR N CA sing N N 402 TYR N H sing N N 403 TYR N H2 sing N N 404 TYR CA C sing N N 405 TYR CA CB sing N N 406 TYR CA HA sing N N 407 TYR C O doub N N 408 TYR C OXT sing N N 409 TYR CB CG sing N N 410 TYR CB HB2 sing N N 411 TYR CB HB3 sing N N 412 TYR CG CD1 doub Y N 413 TYR CG CD2 sing Y N 414 TYR CD1 CE1 sing Y N 415 TYR CD1 HD1 sing N N 416 TYR CD2 CE2 doub Y N 417 TYR CD2 HD2 sing N N 418 TYR CE1 CZ doub Y N 419 TYR CE1 HE1 sing N N 420 TYR CE2 CZ sing Y N 421 TYR CE2 HE2 sing N N 422 TYR CZ OH sing N N 423 TYR OH HH sing N N 424 TYR OXT HXT sing N N 425 VAL N CA sing N N 426 VAL N H sing N N 427 VAL N H2 sing N N 428 VAL CA C sing N N 429 VAL CA CB sing N N 430 VAL CA HA sing N N 431 VAL C O doub N N 432 VAL C OXT sing N N 433 VAL CB CG1 sing N N 434 VAL CB CG2 sing N N 435 VAL CB HB sing N N 436 VAL CG1 HG11 sing N N 437 VAL CG1 HG12 sing N N 438 VAL CG1 HG13 sing N N 439 VAL CG2 HG21 sing N N 440 VAL CG2 HG22 sing N N 441 VAL CG2 HG23 sing N N 442 VAL OXT HXT sing N N 443 # _atom_sites.entry_id 1XDN _atom_sites.fract_transf_matrix[1][1] 0.022266 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004018 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017071 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019179 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_