HEADER OXIDOREDUCTASE 08-SEP-04 1XDW TITLE NAD+-DEPENDENT (R)-2-HYDROXYGLUTARATE DEHYDROGENASE FROM TITLE 2 ACIDAMINOCOCCUS FERMENTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD+-DEPENDENT (R)-2-HYDROXYGLUTARATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HGDH; COMPND 5 EC: 1.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDAMINOCOCCUS FERMENTANS; SOURCE 3 ORGANISM_TAXID: 905; SOURCE 4 GENE: HGH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL VARIANT OF THE BAB ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.M.MARTINS,S.MACEDO-RIBEIRO,J.BRESSER,W.BUCKEL,A.MESSERSCHMIDT REVDAT 4 14-FEB-24 1XDW 1 REMARK REVDAT 3 24-FEB-09 1XDW 1 VERSN REVDAT 2 14-MAR-06 1XDW 1 COMPND REMARK REVDAT 1 08-MAR-05 1XDW 0 JRNL AUTH B.M.MARTINS,S.MACEDO-RIBEIRO,J.BRESSER,W.BUCKEL, JRNL AUTH 2 A.MESSERSCHMIDT JRNL TITL STRUCTURAL BASIS FOR STEREO-SPECIFIC CATALYSIS IN JRNL TITL 2 NAD(+)-DEPENDENT (R)-2-HYDROXYGLUTARATE DEHYDROGENASE FROM JRNL TITL 3 ACIDAMINOCOCCUS FERMENTANS. JRNL REF FEBS J. V. 272 269 2005 JRNL REFN ISSN 1742-464X JRNL PMID 15634349 JRNL DOI 10.1111/J.1432-1033.2004.04417.X REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2543 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2329 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3444 ; 1.697 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5400 ; 0.879 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2862 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 546 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2744 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1458 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.319 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1635 ; 1.144 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2622 ; 1.851 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 908 ; 3.042 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 822 ; 4.712 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2545, 1.2555, 1.0500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 28.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31600 REMARK 200 FOR SHELL : 6.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18 % PEG MME 2000 OR PEG 2000, AND REMARK 280 0.2 M SODIUM OR LITHIUM ACETATE, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.26167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 208.52333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.39250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 260.65417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.13083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.26167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 208.52333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 260.65417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 156.39250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.13083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 13 CG CD1 CD2 REMARK 480 GLU A 17 CG CD OE1 OE2 REMARK 480 LYS A 21 CG CD CE NZ REMARK 480 GLU A 22 CG CD OE1 OE2 REMARK 480 ILE A 27 CD1 REMARK 480 LYS A 37 CB CG CD CE NZ REMARK 480 LYS A 59 CE NZ REMARK 480 LYS A 66 CD CE NZ REMARK 480 LYS A 67 CG CD CE NZ REMARK 480 GLU A 86 CD OE1 OE2 REMARK 480 LYS A 89 CD CE NZ REMARK 480 ARG A 100 CZ NH1 NH2 REMARK 480 LYS A 130 CE NZ REMARK 480 LYS A 210 CG CD CE NZ REMARK 480 GLU A 211 CD OE1 OE2 REMARK 480 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 278 CG CD OE1 OE2 REMARK 480 LYS A 331 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 66 O HOH A 1402 0.33 REMARK 500 CD GLU A 17 O HOH A 1393 0.59 REMARK 500 CD ARG A 235 O HOH A 1386 0.63 REMARK 500 NZ LYS A 130 O HOH A 1369 0.64 REMARK 500 OE2 GLU A 17 O HOH A 1393 0.66 REMARK 500 CG ARG A 235 O HOH A 1386 0.99 REMARK 500 CB LYS A 37 O HOH A 1361 1.12 REMARK 500 CE LYS A 130 O HOH A 1369 1.39 REMARK 500 NZ LYS A 66 O HOH A 1402 1.41 REMARK 500 NE ARG A 235 O HOH A 1386 1.57 REMARK 500 OE1 GLU A 17 O HOH A 1393 1.67 REMARK 500 CD LYS A 67 O HOH A 1374 1.68 REMARK 500 CD LYS A 66 O HOH A 1402 1.83 REMARK 500 CG GLU A 17 O HOH A 1393 1.85 REMARK 500 CG LYS A 67 O HOH A 1374 1.91 REMARK 500 CB ARG A 235 O HOH A 1386 2.11 REMARK 500 OE2 GLU A 22 O HOH A 1360 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1229 O HOH A 1384 25111 1.50 REMARK 500 NH1 ARG A 291 O HOH A 1372 6895 1.68 REMARK 500 N GLU A 143 O HOH A 1023 25111 2.06 REMARK 500 O HOH A 1079 O HOH A 1161 6895 2.06 REMARK 500 O HOH A 1092 O HOH A 1236 6895 2.07 REMARK 500 NZ LYS A 71 OE2 GLU A 249 5144 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 13 CB LEU A 13 CG -0.215 REMARK 500 GLU A 17 CB GLU A 17 CG -0.126 REMARK 500 LYS A 21 CB LYS A 21 CG -0.346 REMARK 500 GLU A 22 CB GLU A 22 CG 0.194 REMARK 500 LYS A 37 CA LYS A 37 CB 0.179 REMARK 500 LYS A 66 CG LYS A 66 CD -0.748 REMARK 500 ARG A 100 NE ARG A 100 CZ 0.081 REMARK 500 LYS A 130 CD LYS A 130 CE -0.476 REMARK 500 GLU A 278 CB GLU A 278 CG -0.244 REMARK 500 LYS A 331 CA LYS A 331 CB -0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 10 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU A 13 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 LYS A 37 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 LYS A 66 CB - CG - CD ANGL. DEV. = 53.0 DEGREES REMARK 500 LYS A 66 CG - CD - CE ANGL. DEV. = 24.8 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 100 CD - NE - CZ ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LYS A 130 CG - CD - CE ANGL. DEV. = 38.5 DEGREES REMARK 500 LYS A 130 CD - CE - NZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 193 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 LYS A 210 CA - CB - CG ANGL. DEV. = 32.1 DEGREES REMARK 500 LYS A 210 CB - CG - CD ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 219 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU A 278 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 303 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 319 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 325 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS A 331 N - CA - CB ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -73.94 -147.87 REMARK 500 ARG A 76 46.98 -86.33 REMARK 500 SER A 102 101.29 -28.48 REMARK 500 ALA A 234 -87.91 -99.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 100 0.11 SIDE CHAIN REMARK 500 GLU A 211 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN HAS NOT BEEN REMARK 999 DEPOSITED INTO ANY SEQUENCE DATABASE. DBREF 1XDW A 1 331 PDB 1XDW 1XDW 1 331 SEQRES 1 A 331 MET LYS VAL LEU CYS TYR GLY VAL ARG ASP VAL GLU LEU SEQRES 2 A 331 PRO ILE PHE GLU ALA CYS ASN LYS GLU PHE GLY TYR ASP SEQRES 3 A 331 ILE LYS CYS VAL PRO ASP TYR LEU ASN THR LYS GLU THR SEQRES 4 A 331 ALA GLU MET ALA ALA GLY PHE ASP ALA VAL ILE LEU ARG SEQRES 5 A 331 GLY ASN CYS PHE ALA ASN LYS GLN ASN LEU ASP ILE TYR SEQRES 6 A 331 LYS LYS LEU GLY VAL LYS TYR ILE LEU THR ARG THR ALA SEQRES 7 A 331 GLY THR ASP HIS ILE ASP LYS GLU TYR ALA LYS GLU LEU SEQRES 8 A 331 GLY PHE PRO MET ALA PHE VAL PRO ARG TYR SER PRO ASN SEQRES 9 A 331 ALA ILE ALA GLU LEU ALA VAL THR GLN ALA MET MET LEU SEQRES 10 A 331 LEU ARG HIS THR ALA TYR THR THR SER ARG THR ALA LYS SEQRES 11 A 331 LYS ASN PHE LYS VAL ASP ALA PHE MET PHE SER LYS GLU SEQRES 12 A 331 VAL ARG ASN CYS THR VAL GLY VAL VAL GLY LEU GLY ARG SEQRES 13 A 331 ILE GLY ARG VAL ALA ALA GLN ILE PHE HIS GLY MET GLY SEQRES 14 A 331 ALA THR VAL ILE GLY GLU ASP VAL PHE GLU ILE LYS GLY SEQRES 15 A 331 ILE GLU ASP TYR CYS THR GLN VAL SER LEU ASP GLU VAL SEQRES 16 A 331 LEU GLU LYS SER ASP ILE ILE THR ILE HIS ALA PRO TYR SEQRES 17 A 331 ILE LYS GLU ASN GLY ALA VAL VAL THR ARG ASP PHE LEU SEQRES 18 A 331 LYS LYS MET LYS ASP GLY ALA ILE LEU VAL ASN CYS ALA SEQRES 19 A 331 ARG GLY GLN LEU VAL ASP THR GLU ALA VAL ILE GLU ALA SEQRES 20 A 331 VAL GLU SER GLY LYS LEU GLY GLY TYR GLY CYS ASP VAL SEQRES 21 A 331 LEU ASP GLY GLU ALA SER VAL PHE GLY LYS ASP LEU GLU SEQRES 22 A 331 GLY GLN LYS LEU GLU ASN PRO LEU PHE GLU LYS LEU VAL SEQRES 23 A 331 ASP LEU TYR PRO ARG VAL LEU ILE THR PRO HIS LEU GLY SEQRES 24 A 331 SER TYR THR ASP GLU ALA VAL LYS ASN MET VAL GLU VAL SEQRES 25 A 331 SER TYR GLN ASN LEU LYS ASP LEU ALA GLU THR GLY ASP SEQRES 26 A 331 CYS PRO ASN LYS ILE LYS FORMUL 2 HOH *403(H2 O) HELIX 1 1 GLU A 12 ASN A 20 1 9 HELIX 2 2 LYS A 21 PHE A 23 5 3 HELIX 3 3 THR A 36 MET A 42 1 7 HELIX 4 4 ASN A 58 GLY A 69 1 12 HELIX 5 5 ASP A 84 LEU A 91 1 8 HELIX 6 6 SER A 102 ARG A 119 1 18 HELIX 7 7 HIS A 120 ALA A 129 1 10 HELIX 8 8 GLU A 143 ASN A 146 5 4 HELIX 9 9 GLY A 155 MET A 168 1 14 HELIX 10 10 SER A 191 SER A 199 1 9 HELIX 11 11 THR A 217 LYS A 223 1 7 HELIX 12 12 ARG A 235 VAL A 239 5 5 HELIX 13 13 ASP A 240 SER A 250 1 11 HELIX 14 14 GLY A 263 VAL A 267 5 5 HELIX 15 15 ASN A 279 LEU A 288 1 10 HELIX 16 16 THR A 302 GLY A 324 1 23 SHEET 1 A 5 ASP A 26 CYS A 29 0 SHEET 2 A 5 LYS A 2 CYS A 5 1 N CYS A 5 O LYS A 28 SHEET 3 A 5 ALA A 48 LEU A 51 1 O ILE A 50 N LEU A 4 SHEET 4 A 5 TYR A 72 THR A 75 1 O LEU A 74 N LEU A 51 SHEET 5 A 5 MET A 95 ALA A 96 1 O ALA A 96 N THR A 75 SHEET 1 B 7 THR A 188 GLN A 189 0 SHEET 2 B 7 THR A 171 GLU A 175 1 N GLY A 174 O THR A 188 SHEET 3 B 7 THR A 148 VAL A 152 1 N VAL A 149 O ILE A 173 SHEET 4 B 7 ILE A 201 ILE A 204 1 O ILE A 201 N GLY A 150 SHEET 5 B 7 ALA A 228 ASN A 232 1 O ILE A 229 N ILE A 202 SHEET 6 B 7 LEU A 253 CYS A 258 1 O GLY A 257 N ASN A 232 SHEET 7 B 7 VAL A 292 ILE A 294 1 O LEU A 293 N CYS A 258 CISPEP 1 TYR A 289 PRO A 290 0 6.37 CRYST1 67.490 67.490 312.785 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014817 0.008555 0.000000 -1.99890 SCALE2 0.000000 0.017109 0.000000 2.00981 SCALE3 0.000000 0.000000 0.003197 -1.99892