HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-SEP-04 1XI6 TITLE EXTRAGENIC SUPPRESSOR FROM PYROCOCCUS FURIOSUS PFU-1862794-001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRAGENIC SUPPRESSOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 STAR DE3 PRIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D BAM KEYWDS STRUCTURAL GENOMICS, PYROCOCCUS FURIOSUS, EXTRAGENIC SUPPRESSOR, KEYWDS 2 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, HYPERTHERMOPHILE, KEYWDS 3 PSI, PROTEIN STRUCTURE INITIATIVE, SECSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,J.C.CHANG,W.ZHOU,L.CHEN,P.HORANYI,H.XU,H.YANG,Z.-J.LIU, AUTHOR 2 J.E.HABEL,D.LEE,S.-H.CHANG,J.P.ROSE,B.-C.WANG,SOUTHEAST AUTHOR 3 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 5 25-OCT-23 1XI6 1 SEQADV REVDAT 4 11-OCT-17 1XI6 1 REMARK REVDAT 3 24-FEB-09 1XI6 1 VERSN REVDAT 2 01-FEB-05 1XI6 1 AUTHOR KEYWDS REMARK REVDAT 1 30-NOV-04 1XI6 0 JRNL AUTH M.ZHAO,J.C.CHANG,W.ZHOU,L.CHEN,P.HORANYI,H.XU,H.YANG, JRNL AUTH 2 Z.-J.LIU,J.E.HABEL,D.LEE,S.-H.CHANG,J.P.ROSE,B.-C.WANG, JRNL AUTH 3 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL EXTRAGENIC SUPPRESSOR FROM PYROCOCCUS FURIOSUS JRNL TITL 2 PFU-1862794-001 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 11906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 745 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.447 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.323 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1722 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2343 ; 1.334 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 7.318 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;35.137 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 253 ;15.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1281 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 755 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1205 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 48 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1836 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 609 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 507 ; 0.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DK4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.9M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, 30%V/V GLYCEROL, 0.07M MES, PH 6.2, MODIFIED REMARK 280 MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 40.80650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.93550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.46775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.80650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 220.40325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 220.40325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.80650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.46775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 40.80650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.93550 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 40.80650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 146.93550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 40.80650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 220.40325 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 73.46775 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.80650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 73.46775 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 220.40325 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 40.80650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 40.80650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 146.93550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LYS A 35 REMARK 465 ILE A 36 REMARK 465 SER A 37 REMARK 465 PRO A 38 REMARK 465 SER A 39 REMARK 465 GLY A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 THR A 43 REMARK 465 THR A 145 REMARK 465 PRO A 146 REMARK 465 ASP A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 PRO A 150 REMARK 465 SER A 251 REMARK 465 LEU A 252 REMARK 465 LEU A 253 REMARK 465 GLU A 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CD CE NZ REMARK 470 LYS A 4 CD CE NZ REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 32 CE NZ REMARK 470 LYS A 44 CE NZ REMARK 470 LYS A 48 NZ REMARK 470 GLU A 51 OE1 OE2 REMARK 470 ILE A 58 CD1 REMARK 470 GLU A 68 OE1 REMARK 470 GLU A 76 CB CG CD OE1 OE2 REMARK 470 LEU A 101 CG CD1 CD2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 138 CD CE NZ REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 HIS A 161 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ILE A 163 CD1 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 HIS A 166 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 167 CG2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 ALA A 177 CB REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 TYR A 197 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 207 CG2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ALA A 215 CB REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 223 CB CG CD CE NZ REMARK 470 ILE A 225 CD1 REMARK 470 ASP A 226 OD1 REMARK 470 ARG A 234 NE CZ NH1 NH2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 -38.55 -39.89 REMARK 500 PRO A 97 47.52 -84.13 REMARK 500 LYS A 108 -109.13 64.84 REMARK 500 GLU A 131 -27.06 -152.16 REMARK 500 LYS A 159 179.36 -46.24 REMARK 500 LYS A 165 11.56 -68.11 REMARK 500 LYS A 196 56.96 -119.55 REMARK 500 LYS A 218 -166.66 -120.47 REMARK 500 ALA A 221 -79.24 -63.30 REMARK 500 PHE A 229 40.88 -86.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 161 GLU A 162 136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1862794-001 RELATED DB: TARGETDB DBREF 1XI6 A 2 254 UNP Q8TZH9 Q8TZH9_PYRFU 2 254 SEQADV 1XI6 ALA A -7 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -6 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -5 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -4 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -3 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -2 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 HIS A -1 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 GLY A 0 UNP Q8TZH9 EXPRESSION TAG SEQADV 1XI6 SER A 1 UNP Q8TZH9 EXPRESSION TAG SEQRES 1 A 262 ALA HIS HIS HIS HIS HIS HIS GLY SER LYS LEU LYS PHE SEQRES 2 A 262 TRP ARG GLU VAL ALA ILE ASP ILE ILE SER ASP PHE GLU SEQRES 3 A 262 THR THR ILE MET PRO PHE PHE GLY ASN PRO ASP GLY GLY SEQRES 4 A 262 LYS LEU VAL LYS ILE SER PRO SER GLY ASP GLU THR LYS SEQRES 5 A 262 LEU VAL ASP LYS LEU ALA GLU ASP LEU ILE LEU SER ARG SEQRES 6 A 262 ILE THR GLU LEU GLY VAL ASN VAL VAL SER GLU GLU VAL SEQRES 7 A 262 GLY VAL ILE ASP ASN GLU SER GLU TYR THR VAL ILE VAL SEQRES 8 A 262 ASP PRO LEU ASP GLY SER TYR ASN PHE ILE ALA GLY ILE SEQRES 9 A 262 PRO PHE PHE ALA LEU SER LEU ALA VAL PHE LYS LYS ASP SEQRES 10 A 262 LYS PRO ILE TYR ALA ILE ILE TYR GLU PRO MET THR GLU SEQRES 11 A 262 ARG PHE PHE GLU GLY ILE PRO GLY GLU GLY ALA PHE LEU SEQRES 12 A 262 ASN GLY LYS ARG ILE LYS VAL ARG LYS THR PRO ASP GLU SEQRES 13 A 262 LYS PRO SER ILE SER PHE TYR SER ARG GLY LYS GLY HIS SEQRES 14 A 262 GLU ILE VAL LYS HIS VAL LYS ARG THR ARG THR LEU GLY SEQRES 15 A 262 ALA ILE ALA LEU GLU LEU ALA TYR LEU ALA MET GLY ALA SEQRES 16 A 262 LEU ASP GLY VAL VAL ASP VAL ARG LYS TYR VAL ARG PRO SEQRES 17 A 262 THR ASP ILE ALA ALA GLY THR ILE ILE ALA LYS GLU ALA SEQRES 18 A 262 GLY ALA LEU ILE LYS ASP SER ALA GLY LYS ASP ILE ASP SEQRES 19 A 262 ILE SER PHE ASN ALA THR ASP ARG LEU ASP VAL ILE ALA SEQRES 20 A 262 VAL ASN SER GLU GLU LEU LEU LYS THR ILE LEU SER LEU SEQRES 21 A 262 LEU GLU HELIX 1 1 LYS A 2 ILE A 21 1 20 HELIX 2 2 MET A 22 PHE A 25 5 4 HELIX 3 3 ASN A 27 LYS A 32 5 6 HELIX 4 4 LYS A 44 THR A 59 1 16 HELIX 5 5 GLU A 60 GLY A 62 5 3 HELIX 6 6 GLY A 88 GLY A 95 1 8 HELIX 7 7 ILE A 163 VAL A 167 5 5 HELIX 8 8 ALA A 175 GLY A 186 1 12 HELIX 9 9 ARG A 199 GLU A 212 1 14 HELIX 10 10 SER A 242 LEU A 250 1 9 SHEET 1 A 8 GLY A 71 ILE A 73 0 SHEET 2 A 8 ASN A 64 SER A 67 -1 N VAL A 65 O ILE A 73 SHEET 3 A 8 TYR A 79 ASP A 87 1 O VAL A 81 N ASN A 64 SHEET 4 A 8 ALA A 100 LYS A 107 -1 O PHE A 106 N THR A 80 SHEET 5 A 8 LYS A 110 GLU A 118 -1 O TYR A 113 N VAL A 105 SHEET 6 A 8 ARG A 123 ILE A 128 -1 O PHE A 125 N ILE A 116 SHEET 7 A 8 GLY A 132 LEU A 135 -1 O PHE A 134 N GLU A 126 SHEET 8 A 8 LYS A 138 ARG A 139 -1 O LYS A 138 N LEU A 135 SHEET 1 B 5 THR A 170 ARG A 171 0 SHEET 2 B 5 ILE A 152 TYR A 155 1 N ILE A 152 O ARG A 171 SHEET 3 B 5 GLY A 190 VAL A 198 1 O VAL A 194 N TYR A 155 SHEET 4 B 5 LEU A 235 VAL A 240 -1 O ALA A 239 N VAL A 191 SHEET 5 B 5 LEU A 216 LYS A 218 -1 N LYS A 218 O ILE A 238 CRYST1 81.613 81.613 293.871 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003403 0.00000