HEADER HYDROLASE 24-SEP-04 1XJU TITLE CRYSTAL STRUCTURE OF SECRETED INACTIVE FORM OF P1 PHAGE ENDOLYSIN LYZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN, PROTEIN GP17; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 3 ORGANISM_TAXID: 10678; SOURCE 4 GENE: 17, LYSA, LYZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SECRETED INACTIVE CONFORMATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.AROCKIASAMY,J.C.SACCHETTINI REVDAT 4 11-OCT-17 1XJU 1 REMARK REVDAT 3 13-JUL-11 1XJU 1 VERSN REVDAT 2 24-FEB-09 1XJU 1 VERSN REVDAT 1 11-JAN-05 1XJU 0 JRNL AUTH M.XU,A.ARULANDU,D.K.STRUCK,S.SWANSON,J.C.SACCHETTINI,R.YOUNG JRNL TITL DISULFIDE ISOMERIZATION AFTER MEMBRANE RELEASE OF ITS SAR JRNL TITL 2 DOMAIN ACTIVATES P1 LYSOZYME. JRNL REF SCIENCE V. 307 113 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 15637279 JRNL DOI 10.1126/SCIENCE.1105143 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 115921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2512 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3391 ; 1.917 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5150 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 5.335 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;26.570 ;23.496 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;12.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.283 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2787 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 589 ; 0.239 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2401 ; 0.209 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1402 ; 0.093 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 617 ; 0.208 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.201 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 133 ; 0.331 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 81 ; 0.204 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 2.158 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 644 ; 1.270 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2444 ; 2.378 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 3.334 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 947 ; 3.935 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5704 ; 2.779 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 570 ; 8.237 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4688 ; 2.899 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG4000, PH 4.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.89300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -16.51175 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 74.41821 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 ASN B 62 REMARK 465 THR B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 186 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 186 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 699 O HOH A 834 1.62 REMARK 500 ND2 ASN A 115 O HOH A 838 1.69 REMARK 500 O HOH A 635 O HOH A 834 1.80 REMARK 500 O HOH B 691 O HOH B 828 1.83 REMARK 500 O HOH B 765 O HOH B 849 1.93 REMARK 500 O HOH B 637 O HOH B 827 2.02 REMARK 500 O HOH B 760 O HOH B 811 2.08 REMARK 500 O2 SO4 A 606 O HOH A 812 2.10 REMARK 500 O HOH B 728 O HOH B 794 2.11 REMARK 500 NH1 ARG B 90 O HOH B 806 2.14 REMARK 500 O HOH B 697 O HOH B 867 2.16 REMARK 500 OE2 GLU A 82 O HOH A 766 2.16 REMARK 500 O HOH A 638 O HOH A 775 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 764 O HOH B 871 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 42 CD GLU A 42 OE1 0.073 REMARK 500 GLU A 42 CD GLU A 42 OE2 0.070 REMARK 500 ARG B 46 CG ARG B 46 CD 0.194 REMARK 500 GLU B 89 CD GLU B 89 OE1 -0.098 REMARK 500 MET B 101 CA MET B 101 CB 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 MET B 101 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG B 175 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 154 9.17 -69.16 REMARK 500 PHE B 156 65.85 -111.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 608 DBREF 1XJU A 29 185 UNP Q37875 LYS_BPP1 29 185 DBREF 1XJU B 29 185 UNP Q37875 LYS_BPP1 29 185 SEQADV 1XJU HIS A 186 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS A 187 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS A 188 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS A 189 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS A 190 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS A 191 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 186 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 187 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 188 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 189 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 190 UNP Q37875 EXPRESSION TAG SEQADV 1XJU HIS B 191 UNP Q37875 EXPRESSION TAG SEQRES 1 A 163 ARG THR ASN GLN ALA GLY LEU GLU LEU ILE GLY ASN ALA SEQRES 2 A 163 GLU GLY CYS ARG ARG ASP PRO TYR MET CYS PRO ALA GLY SEQRES 3 A 163 VAL TRP THR ASP GLY ILE GLY ASN THR HIS GLY VAL THR SEQRES 4 A 163 PRO GLY VAL ARG LYS THR ASP GLN GLN ILE ALA ALA ASP SEQRES 5 A 163 TRP GLU LYS ASN ILE LEU ILE ALA GLU ARG CYS ILE ASN SEQRES 6 A 163 GLN HIS PHE ARG GLY LYS ASP MET PRO ASP ASN ALA PHE SEQRES 7 A 163 SER ALA MET THR SER ALA ALA PHE ASN MET GLY CYS ASN SEQRES 8 A 163 SER LEU ARG THR TYR TYR SER LYS ALA ARG GLY MET ARG SEQRES 9 A 163 VAL GLU THR SER ILE HIS LYS TRP ALA GLN LYS GLY GLU SEQRES 10 A 163 TRP VAL ASN MET CYS ASN HIS LEU PRO ASP PHE VAL ASN SEQRES 11 A 163 SER ASN GLY VAL PRO LEU ARG GLY LEU LYS ILE ARG ARG SEQRES 12 A 163 GLU LYS GLU ARG GLN LEU CYS LEU THR GLY LEU VAL ASN SEQRES 13 A 163 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 163 ARG THR ASN GLN ALA GLY LEU GLU LEU ILE GLY ASN ALA SEQRES 2 B 163 GLU GLY CYS ARG ARG ASP PRO TYR MET CYS PRO ALA GLY SEQRES 3 B 163 VAL TRP THR ASP GLY ILE GLY ASN THR HIS GLY VAL THR SEQRES 4 B 163 PRO GLY VAL ARG LYS THR ASP GLN GLN ILE ALA ALA ASP SEQRES 5 B 163 TRP GLU LYS ASN ILE LEU ILE ALA GLU ARG CYS ILE ASN SEQRES 6 B 163 GLN HIS PHE ARG GLY LYS ASP MET PRO ASP ASN ALA PHE SEQRES 7 B 163 SER ALA MET THR SER ALA ALA PHE ASN MET GLY CYS ASN SEQRES 8 B 163 SER LEU ARG THR TYR TYR SER LYS ALA ARG GLY MET ARG SEQRES 9 B 163 VAL GLU THR SER ILE HIS LYS TRP ALA GLN LYS GLY GLU SEQRES 10 B 163 TRP VAL ASN MET CYS ASN HIS LEU PRO ASP PHE VAL ASN SEQRES 11 B 163 SER ASN GLY VAL PRO LEU ARG GLY LEU LYS ILE ARG ARG SEQRES 12 B 163 GLU LYS GLU ARG GLN LEU CYS LEU THR GLY LEU VAL ASN SEQRES 13 B 163 GLU HIS HIS HIS HIS HIS HIS HET SO4 A 602 5 HET SO4 A 606 5 HET SO4 B 601 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 607 5 HET SO4 B 608 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 HOH *570(H2 O) HELIX 1 1 ASN A 31 GLY A 39 1 9 HELIX 2 2 ASN A 40 ASP A 47 1 8 HELIX 3 3 PRO A 48 CYS A 51 5 4 HELIX 4 4 PRO A 52 TRP A 56 5 5 HELIX 5 5 THR A 73 PHE A 96 1 24 HELIX 6 6 ARG A 97 MET A 101 5 5 HELIX 7 7 PRO A 102 GLY A 117 1 16 HELIX 8 8 GLY A 117 ARG A 122 1 6 HELIX 9 9 THR A 135 LYS A 143 1 9 HELIX 10 10 GLU A 145 HIS A 152 1 8 HELIX 11 11 LEU A 153 PHE A 156 5 4 HELIX 12 12 LEU A 164 THR A 180 1 17 HELIX 13 13 ASN B 31 GLY B 39 1 9 HELIX 14 14 ASN B 40 ASP B 47 1 8 HELIX 15 15 PRO B 48 CYS B 51 5 4 HELIX 16 16 PRO B 52 TRP B 56 5 5 HELIX 17 17 THR B 73 PHE B 96 1 24 HELIX 18 18 ARG B 97 MET B 101 5 5 HELIX 19 19 PRO B 102 GLY B 117 1 16 HELIX 20 20 GLY B 117 ARG B 122 1 6 HELIX 21 21 THR B 135 LYS B 143 1 9 HELIX 22 22 GLU B 145 HIS B 152 1 8 HELIX 23 23 LEU B 153 PHE B 156 5 4 HELIX 24 24 LEU B 164 THR B 180 1 17 SHEET 1 A 2 THR A 123 SER A 126 0 SHEET 2 A 2 MET A 131 GLU A 134 -1 O MET A 131 N SER A 126 SHEET 1 B 2 ASN A 158 SER A 159 0 SHEET 2 B 2 VAL A 162 PRO A 163 -1 O VAL A 162 N SER A 159 SHEET 1 C 2 THR B 123 SER B 126 0 SHEET 2 C 2 MET B 131 GLU B 134 -1 O VAL B 133 N TYR B 124 SHEET 1 D 2 ASN B 158 SER B 159 0 SHEET 2 D 2 VAL B 162 PRO B 163 -1 O VAL B 162 N SER B 159 SSBOND 1 CYS A 44 CYS A 51 1555 1555 2.06 SSBOND 2 CYS A 91 CYS A 118 1555 1555 2.04 SSBOND 3 CYS A 150 CYS A 178 1555 1555 2.03 SSBOND 4 CYS B 44 CYS B 51 1555 1555 2.06 SSBOND 5 CYS B 91 CYS B 118 1555 1555 2.05 SSBOND 6 CYS B 150 CYS B 178 1555 1555 2.04 CISPEP 1 GLY A 65 VAL A 66 0 5.11 SITE 1 AC1 7 ARG B 165 LYS B 168 HOH B 664 HOH B 724 SITE 2 AC1 7 HOH B 756 HOH B 831 HOH B 847 SITE 1 AC2 6 ARG A 90 SER A 126 LYS A 127 ALA A 128 SITE 2 AC2 6 HOH A 677 HOH A 824 SITE 1 AC3 5 SER B 136 LYS B 139 TRP B 140 HIS B 152 SITE 2 AC3 5 HOH B 912 SITE 1 AC4 8 HIS B 95 ARG B 122 HIS B 138 ARG B 165 SITE 2 AC4 8 HOH B 617 HOH B 641 HOH B 682 HOH B 798 SITE 1 AC5 7 ARG B 122 HOH B 619 HOH B 666 HOH B 696 SITE 2 AC5 7 HOH B 719 HOH B 857 HOH B 891 SITE 1 AC6 5 ARG A 129 GLU A 134 LYS A 139 HOH A 679 SITE 2 AC6 5 HOH A 812 SITE 1 AC7 2 LYS B 99 HOH B 826 SITE 1 AC8 4 ARG B 29 HOH B 692 HOH B 829 HOH B 870 CRYST1 33.349 59.786 76.228 90.00 102.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030000 0.000000 0.006700 0.00000 SCALE2 0.000000 0.016700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013400 0.00000