HEADER MEMBRANE PROTEIN/CHAPERON 29-SEP-04 1XKP TITLE CRYSTAL STRUCTURE OF THE VIRULENCE FACTOR YOPN IN COMPLEX WITH ITS TITLE 2 HETERODIMERIC CHAPERONE SYCN-YSCB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MEMBRANE-BOUND YOP TARGETING PROTEIN YOPN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 32-277; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHAPERONE PROTEIN SYCN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CHAPERONE PROTEIN YSCB; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: YOP PROTEINS TRANSLOCATION PROTEIN B; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: YOPN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST42; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 12 ORGANISM_TAXID: 632; SOURCE 13 GENE: SYCN; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDEST42; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 21 ORGANISM_TAXID: 632; SOURCE 22 GENE: YSCB; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PDEST42 KEYWDS YOPN, TYPE III SECRETION, CHAPERONE, SYCN, YSCB, MEMBRANE PROTEIN- KEYWDS 2 CHAPERON COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.D.SCHUBOT,M.W.JACKSON,K.J.PENROSE,S.CHERRY,J.E.TROPEA,G.V.PLANO, AUTHOR 2 D.S.WAUGH REVDAT 4 20-OCT-21 1XKP 1 SEQADV LINK REVDAT 3 13-JUL-11 1XKP 1 VERSN REVDAT 2 24-FEB-09 1XKP 1 VERSN REVDAT 1 22-MAR-05 1XKP 0 JRNL AUTH F.D.SCHUBOT,M.W.JACKSON,K.J.PENROSE,S.CHERRY,J.E.TROPEA, JRNL AUTH 2 G.V.PLANO,D.S.WAUGH JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A MACROMOLECULAR ASSEMBLY JRNL TITL 2 THAT REGULATES TYPE III SECRETION IN YERSINIA PESTIS. JRNL REF J.MOL.BIOL. V. 346 1147 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15701523 JRNL DOI 10.1016/J.JMB.2004.12.036 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.D.SCHUBOT,D.S.WAUGH REMARK 1 TITL A PIVOTAL ROLE FOR REDUCTIVE METHYLATION IN THE DE NOVO REMARK 1 TITL 2 CRYSTALLIZATION OF A TERNARY COMPLEX COMPOSED OF YERSINIA REMARK 1 TITL 3 PESTIS VIRULENCE FACTORS YOPN, SYCN AND YSCB REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1981 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15502305 REMARK 1 DOI 10.1107/S0907444904023005 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 51811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 2.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3830 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3694 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5189 ; 1.494 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8575 ; 1.531 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 5.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;38.694 ;25.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;13.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4150 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 820 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3769 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1835 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2431 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 167 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3073 ; 1.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 970 ; 0.247 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3822 ; 1.459 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1585 ; 2.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 3.656 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2840 -28.6440 72.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: -0.0302 REMARK 3 T33: -0.1429 T12: -0.0244 REMARK 3 T13: 0.0040 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 3.9942 L22: 4.7728 REMARK 3 L33: 0.7968 L12: -2.1704 REMARK 3 L13: -0.4015 L23: -0.8271 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: 0.2106 S13: -0.0666 REMARK 3 S21: -0.1261 S22: -0.1796 S23: 0.0506 REMARK 3 S31: 0.0119 S32: 0.1613 S33: 0.0797 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4530 -23.3370 79.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.0029 T22: -0.0228 REMARK 3 T33: -0.1356 T12: -0.0102 REMARK 3 T13: -0.0067 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 2.8009 L22: 2.5328 REMARK 3 L33: 1.6369 L12: -2.1616 REMARK 3 L13: 0.0691 L23: 0.0596 REMARK 3 S TENSOR REMARK 3 S11: -0.1548 S12: -0.2143 S13: 0.0183 REMARK 3 S21: 0.0981 S22: 0.1676 S23: -0.0037 REMARK 3 S31: 0.1130 S32: -0.1134 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3140 7.3100 75.5580 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: 0.0405 REMARK 3 T33: -0.0666 T12: 0.0280 REMARK 3 T13: 0.0066 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.0077 L22: 0.6190 REMARK 3 L33: 0.7883 L12: -0.5476 REMARK 3 L13: 0.2807 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: -0.0837 S13: -0.2383 REMARK 3 S21: -0.0095 S22: 0.0611 S23: -0.0328 REMARK 3 S31: 0.0380 S32: 0.0264 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 127 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7590 -5.9170 75.7400 REMARK 3 T TENSOR REMARK 3 T11: -0.1079 T22: 0.1209 REMARK 3 T33: -0.1292 T12: 0.0422 REMARK 3 T13: -0.0402 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.6438 L22: 4.8972 REMARK 3 L33: 0.8636 L12: -0.0808 REMARK 3 L13: -0.1988 L23: -0.3476 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: -0.0922 S13: -0.0793 REMARK 3 S21: -0.0429 S22: -0.0860 S23: 0.3709 REMARK 3 S31: -0.0455 S32: -0.1814 S33: -0.0113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.20950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.10475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.31425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 58 REMARK 465 VAL A 59 REMARK 465 PHE A 60 REMARK 465 SER A 61 REMARK 465 GLU A 62 REMARK 465 ARG A 63 REMARK 465 MLY A 64 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 SER A 272 REMARK 465 ASP A 273 REMARK 465 GLN A 274 REMARK 465 VAL A 275 REMARK 465 MLY A 276 REMARK 465 GLY A 277 REMARK 465 MET B 1 REMARK 465 PRO B 123 REMARK 465 PRO B 124 REMARK 465 MET C 1 REMARK 465 PHE C 128 REMARK 465 SER C 129 REMARK 465 VAL C 130 REMARK 465 ALA C 131 REMARK 465 SER C 132 REMARK 465 ARG C 133 REMARK 465 VAL C 134 REMARK 465 GLY C 135 REMARK 465 TRP C 136 REMARK 465 ASN C 137 REMARK 465 HIS C 138 REMARK 465 HIS C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 269 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU A 109 CD2 LEU A 155 1.50 REMARK 500 CH1 MLY A 237 O HOH A 348 1.57 REMARK 500 NZ MLY A 237 O HOH A 348 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 94 66.71 -157.27 REMARK 500 PRO A 95 73.86 -56.64 REMARK 500 LEU A 109 -38.26 178.81 REMARK 500 SER A 111 -79.49 -119.45 REMARK 500 ASN A 112 -78.01 27.51 REMARK 500 ARG A 149 75.16 155.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 1XKP A 32 277 GB 3822072 AAC69792 32 277 DBREF 1XKP B 1 124 UNP P61380 SYCN_YERPE 1 124 DBREF 1XKP C 1 137 UNP Q56973 YSCB_YERPE 1 137 SEQADV 1XKP DMG A 32 GB 3822072 GLY 32 MODIFIED RESIDUE SEQADV 1XKP MLY A 64 GB 3822072 LYS 64 MODIFIED RESIDUE SEQADV 1XKP MLY A 70 GB 3822072 LYS 70 MODIFIED RESIDUE SEQADV 1XKP MLY A 72 GB 3822072 LYS 72 MODIFIED RESIDUE SEQADV 1XKP MLY A 93 GB 3822072 LYS 93 MODIFIED RESIDUE SEQADV 1XKP MLY A 100 GB 3822072 LYS 100 MODIFIED RESIDUE SEQADV 1XKP MLY A 122 GB 3822072 LYS 122 MODIFIED RESIDUE SEQADV 1XKP MLY A 128 GB 3822072 LYS 128 MODIFIED RESIDUE SEQADV 1XKP MLY A 137 GB 3822072 LYS 137 MODIFIED RESIDUE SEQADV 1XKP MLY A 147 GB 3822072 LYS 147 MODIFIED RESIDUE SEQADV 1XKP MLY A 221 GB 3822072 LYS 221 MODIFIED RESIDUE SEQADV 1XKP MLY A 237 GB 3822072 LYS 237 MODIFIED RESIDUE SEQADV 1XKP MLY A 254 GB 3822072 LYS 254 MODIFIED RESIDUE SEQADV 1XKP MLY A 264 GB 3822072 LYS 264 MODIFIED RESIDUE SEQADV 1XKP MLY A 266 GB 3822072 LYS 266 MODIFIED RESIDUE SEQADV 1XKP MLY A 276 GB 3822072 LYS 276 MODIFIED RESIDUE SEQADV 1XKP MLY B 65 UNP P61380 LYS 65 MODIFIED RESIDUE SEQADV 1XKP MLY B 74 UNP P61380 LYS 74 MODIFIED RESIDUE SEQADV 1XKP PRO B 123 UNP P61380 SER 123 ENGINEERED MUTATION SEQADV 1XKP MLY C 6 UNP Q56973 LYS 6 MODIFIED RESIDUE SEQADV 1XKP MLY C 15 UNP Q56973 LYS 15 MODIFIED RESIDUE SEQADV 1XKP MLY C 21 UNP Q56973 LYS 21 MODIFIED RESIDUE SEQADV 1XKP MLY C 31 UNP Q56973 LYS 31 MODIFIED RESIDUE SEQADV 1XKP MLY C 113 UNP Q56973 LYS 113 MODIFIED RESIDUE SEQADV 1XKP HIS C 138 UNP Q56973 EXPRESSION TAG SEQADV 1XKP HIS C 139 UNP Q56973 EXPRESSION TAG SEQADV 1XKP HIS C 140 UNP Q56973 EXPRESSION TAG SEQADV 1XKP HIS C 141 UNP Q56973 EXPRESSION TAG SEQADV 1XKP HIS C 142 UNP Q56973 EXPRESSION TAG SEQADV 1XKP HIS C 143 UNP Q56973 EXPRESSION TAG SEQRES 1 A 246 DMG GLN PHE ARG GLY GLU SER VAL GLN ILE VAL SER GLY SEQRES 2 A 246 THR LEU GLN SER ILE ALA ASP MET ALA GLU GLU VAL THR SEQRES 3 A 246 PHE VAL PHE SER GLU ARG MLY GLU LEU SER LEU ASP MLY SEQRES 4 A 246 ARG MLY LEU SER ASP SER GLN ALA ARG VAL SER ASP VAL SEQRES 5 A 246 GLU GLU GLN VAL ASN GLN TYR LEU SER MLY VAL PRO GLU SEQRES 6 A 246 LEU GLU GLN MLY GLN ASN VAL SER GLU LEU LEU SER LEU SEQRES 7 A 246 LEU SER ASN SER PRO ASN ILE SER LEU SER GLN LEU MLY SEQRES 8 A 246 ALA TYR LEU GLU GLY MLY SER GLU GLU PRO SER GLU GLN SEQRES 9 A 246 PHE MLY MET LEU CYS GLY LEU ARG ASP ALA LEU MLY GLY SEQRES 10 A 246 ARG PRO GLU LEU ALA HIS LEU SER HIS LEU VAL GLU GLN SEQRES 11 A 246 ALA LEU VAL SER MET ALA GLU GLU GLN GLY GLU THR ILE SEQRES 12 A 246 VAL LEU GLY ALA ARG ILE THR PRO GLU ALA TYR ARG GLU SEQRES 13 A 246 SER GLN SER GLY VAL ASN PRO LEU GLN PRO LEU ARG ASP SEQRES 14 A 246 THR TYR ARG ASP ALA VAL MET GLY TYR GLN GLY ILE TYR SEQRES 15 A 246 ALA ILE TRP SER ASP LEU GLN MLY ARG PHE PRO ASN GLY SEQRES 16 A 246 ASP ILE ASP SER VAL ILE LEU PHE LEU GLN MLY ALA LEU SEQRES 17 A 246 SER ALA ASP LEU GLN SER GLN GLN SER GLY SER GLY ARG SEQRES 18 A 246 GLU MLY LEU GLY ILE VAL ILE SER ASP LEU GLN MLY LEU SEQRES 19 A 246 MLY GLU PHE GLY SER VAL SER ASP GLN VAL MLY GLY SEQRES 1 B 124 MET SER TRP ILE GLU PRO ILE ILE SER HIS PHE CYS GLN SEQRES 2 B 124 ASP LEU GLY VAL PRO THR SER SER PRO LEU SER PRO LEU SEQRES 3 B 124 ILE GLN LEU GLU MET ALA GLN SER GLY THR LEU GLN LEU SEQRES 4 B 124 GLU GLN HIS GLY ALA THR LEU THR LEU TRP LEU ALA ARG SEQRES 5 B 124 SER LEU ALA TRP HIS ARG CYS GLU ASP ALA MET VAL MLY SEQRES 6 B 124 ALA LEU THR LEU THR ALA ALA GLN MLY SER GLY ALA LEU SEQRES 7 B 124 PRO LEU ARG ALA GLY TRP LEU GLY GLU SER GLN LEU VAL SEQRES 8 B 124 LEU PHE VAL SER LEU ASP GLU ARG SER LEU THR LEU PRO SEQRES 9 B 124 LEU LEU HIS GLN ALA PHE GLU GLN LEU LEU ARG LEU GLN SEQRES 10 B 124 GLN GLU VAL LEU ALA PRO PRO SEQRES 1 C 143 MET GLN ASN LEU LEU MLY ASN LEU ALA ALA SER LEU GLY SEQRES 2 C 143 ARG MLY PRO PHE VAL ALA ASP MLY GLN GLY VAL TYR ARG SEQRES 3 C 143 LEU THR ILE ASP MLY HIS LEU VAL MET LEU ALA PRO HIS SEQRES 4 C 143 GLY SER GLU LEU VAL LEU ARG THR PRO ILE ASP ALA PRO SEQRES 5 C 143 MET LEU ARG GLU GLY ASN ASN VAL ASN VAL THR LEU LEU SEQRES 6 C 143 ARG SER LEU MET GLN GLN ALA LEU ALA TRP ALA LYS ARG SEQRES 7 C 143 TYR PRO GLN THR LEU VAL LEU ASP ASP CYS GLY GLN LEU SEQRES 8 C 143 VAL LEU GLU ALA ARG LEU ARG LEU GLN GLU LEU ASP THR SEQRES 9 C 143 HIS GLY LEU GLN GLU VAL ILE ASN MLY GLN LEU ALA LEU SEQRES 10 C 143 LEU GLU HIS LEU ILE PRO GLN LEU THR PRO PHE SER VAL SEQRES 11 C 143 ALA SER ARG VAL GLY TRP ASN HIS HIS HIS HIS HIS HIS MODRES 1XKP MLY A 70 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 72 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 93 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 100 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 122 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 128 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 137 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 147 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 221 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 237 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 254 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 264 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY A 266 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY B 65 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY B 74 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY C 6 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY C 15 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY C 21 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY C 31 LYS N-DIMETHYL-LYSINE MODRES 1XKP MLY C 113 LYS N-DIMETHYL-LYSINE HET DMG A 32 6 HET MLY A 70 11 HET MLY A 72 11 HET MLY A 93 11 HET MLY A 100 11 HET MLY A 122 11 HET MLY A 128 11 HET MLY A 137 11 HET MLY A 147 11 HET MLY A 221 11 HET MLY A 237 11 HET MLY A 254 11 HET MLY A 264 11 HET MLY A 266 11 HET MLY B 65 11 HET MLY B 74 11 HET MLY C 6 11 HET MLY C 15 11 HET MLY C 21 11 HET MLY C 31 11 HET MLY C 113 11 HETNAM DMG N,N-DIMETHYLGLYCINE HETNAM MLY N-DIMETHYL-LYSINE HETSYN DMG DIMETHYLGLYCINE FORMUL 1 DMG C4 H9 N O2 FORMUL 1 MLY 20(C8 H18 N2 O2) FORMUL 4 HOH *179(H2 O) HELIX 1 1 SER A 48 THR A 57 1 10 HELIX 2 2 SER A 67 ARG A 71 5 5 HELIX 3 3 SER A 76 SER A 92 1 17 HELIX 4 4 GLU A 98 SER A 111 1 14 HELIX 5 5 SER A 117 SER A 129 1 13 HELIX 6 6 GLU A 131 GLY A 148 1 18 HELIX 7 7 ARG A 149 GLU A 151 5 3 HELIX 8 8 LEU A 152 GLN A 189 1 38 HELIX 9 9 PRO A 194 GLY A 208 1 15 HELIX 10 10 GLY A 211 PHE A 223 1 13 HELIX 11 11 ASP A 227 GLN A 246 1 20 HELIX 12 12 GLY A 249 GLU A 267 1 19 HELIX 13 13 ILE B 4 LEU B 15 1 12 HELIX 14 14 ALA B 55 HIS B 57 5 3 HELIX 15 15 ARG B 58 THR B 70 1 13 HELIX 16 16 ALA B 71 SER B 75 5 5 HELIX 17 17 ARG B 99 LEU B 101 5 3 HELIX 18 18 THR B 102 ALA B 122 1 21 HELIX 19 19 GLN C 2 LEU C 12 1 11 HELIX 20 20 ALA C 51 MET C 53 5 3 HELIX 21 21 ASN C 61 ALA C 76 1 16 HELIX 22 22 GLN C 100 LEU C 102 5 3 HELIX 23 23 ASP C 103 ILE C 122 1 20 HELIX 24 24 PRO C 123 THR C 126 5 4 SHEET 1 A 7 GLN A 33 PHE A 34 0 SHEET 2 A 7 GLU A 37 VAL A 42 -1 O GLU A 37 N PHE A 34 SHEET 3 A 7 LEU B 26 MET B 31 -1 O GLU B 30 N GLN A 40 SHEET 4 A 7 GLY B 35 HIS B 42 -1 O LEU B 37 N LEU B 29 SHEET 5 A 7 THR B 45 SER B 53 -1 O TRP B 49 N GLN B 38 SHEET 6 A 7 GLN B 89 ASP B 97 -1 O LEU B 96 N LEU B 46 SHEET 7 A 7 ARG B 81 LEU B 85 -1 N ARG B 81 O PHE B 93 SHEET 1 B 6 LEU A 73 ASP A 75 0 SHEET 2 B 6 TYR C 25 ILE C 29 -1 O THR C 28 N SER A 74 SHEET 3 B 6 HIS C 32 HIS C 39 -1 O VAL C 34 N LEU C 27 SHEET 4 B 6 GLU C 42 PRO C 48 -1 O ARG C 46 N MET C 35 SHEET 5 B 6 LEU C 91 ARG C 98 -1 O LEU C 97 N LEU C 43 SHEET 6 B 6 THR C 82 LEU C 85 -1 N THR C 82 O GLU C 94 SHEET 1 C 2 ARG C 55 GLU C 56 0 SHEET 2 C 2 ASN C 59 VAL C 60 -1 O ASN C 59 N GLU C 56 LINK C DMG A 32 N GLN A 33 1555 1555 1.32 LINK C ASP A 69 N MLY A 70 1555 1555 1.33 LINK C MLY A 70 N ARG A 71 1555 1555 1.33 LINK C ARG A 71 N MLY A 72 1555 1555 1.33 LINK C MLY A 72 N LEU A 73 1555 1555 1.33 LINK C SER A 92 N MLY A 93 1555 1555 1.33 LINK C MLY A 93 N VAL A 94 1555 1555 1.33 LINK C GLN A 99 N MLY A 100 1555 1555 1.33 LINK C MLY A 100 N GLN A 101 1555 1555 1.33 LINK C LEU A 121 N MLY A 122 1555 1555 1.33 LINK C MLY A 122 N ALA A 123 1555 1555 1.33 LINK C GLY A 127 N MLY A 128 1555 1555 1.33 LINK C MLY A 128 N SER A 129 1555 1555 1.33 LINK C PHE A 136 N MLY A 137 1555 1555 1.33 LINK C MLY A 137 N MET A 138 1555 1555 1.34 LINK C LEU A 146 N MLY A 147 1555 1555 1.34 LINK C MLY A 147 N GLY A 148 1555 1555 1.33 LINK C GLN A 220 N MLY A 221 1555 1555 1.32 LINK C MLY A 221 N ARG A 222 1555 1555 1.32 LINK C GLN A 236 N MLY A 237 1555 1555 1.33 LINK C MLY A 237 N ALA A 238 1555 1555 1.34 LINK C GLU A 253 N MLY A 254 1555 1555 1.33 LINK C MLY A 254 N LEU A 255 1555 1555 1.33 LINK C GLN A 263 N MLY A 264 1555 1555 1.33 LINK C MLY A 264 N LEU A 265 1555 1555 1.32 LINK C LEU A 265 N MLY A 266 1555 1555 1.32 LINK C MLY A 266 N GLU A 267 1555 1555 1.33 LINK C VAL B 64 N MLY B 65 1555 1555 1.33 LINK C MLY B 65 N ALA B 66 1555 1555 1.32 LINK C GLN B 73 N MLY B 74 1555 1555 1.33 LINK C MLY B 74 N SER B 75 1555 1555 1.33 LINK C LEU C 5 N MLY C 6 1555 1555 1.33 LINK C MLY C 6 N ASN C 7 1555 1555 1.34 LINK C ARG C 14 N MLY C 15 1555 1555 1.33 LINK C MLY C 15 N PRO C 16 1555 1555 1.34 LINK C ASP C 20 N MLY C 21 1555 1555 1.33 LINK C MLY C 21 N GLN C 22 1555 1555 1.33 LINK C ASP C 30 N MLY C 31 1555 1555 1.34 LINK C MLY C 31 N HIS C 32 1555 1555 1.34 LINK C ASN C 112 N MLY C 113 1555 1555 1.33 LINK C MLY C 113 N GLN C 114 1555 1555 1.33 CISPEP 1 SER B 21 PRO B 22 0 3.20 CRYST1 60.718 60.718 140.419 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007122 0.00000 HETATM 1 O DMG A 32 50.863 -36.662 83.861 1.00 23.08 O HETATM 2 C DMG A 32 51.442 -35.616 84.127 1.00 25.55 C HETATM 3 CA DMG A 32 52.721 -35.212 83.448 1.00 24.95 C HETATM 4 N DMG A 32 53.390 -36.379 82.773 1.00 25.45 N HETATM 5 C4 DMG A 32 53.993 -36.057 81.448 1.00 23.63 C HETATM 6 C5 DMG A 32 53.945 -37.408 83.697 1.00 26.49 C