HEADER RNA BINDING PROTEIN 30-SEP-04 1XLY TITLE X-RAY STRUCTURE OF THE RNA-BINDING PROTEIN SHE2P COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHE2P; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SHE2, YKL130C; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SHE2, YKL130C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS BASIC HELICAL HAIRPIN, FIVE HELIX BUNDLE, DIMER, RNA-BINDING PROTEIN, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.NIESSING,S.HUETTELMAIER,D.ZENKLUSEN,R.H.SINGER,S.K.BURLEY REVDAT 6 14-FEB-24 1XLY 1 REMARK REVDAT 5 20-OCT-21 1XLY 1 SEQADV REVDAT 4 03-FEB-21 1XLY 1 AUTHOR JRNL REVDAT 3 11-OCT-17 1XLY 1 REMARK REVDAT 2 24-FEB-09 1XLY 1 VERSN REVDAT 1 16-NOV-04 1XLY 0 JRNL AUTH D.NIESSING,S.HUETTELMAIER,D.ZENKLUSEN,R.H.SINGER,S.K.BURLEY JRNL TITL SHE2P IS A NOVEL RNA BINDING PROTEIN WITH A BASIC HELICAL JRNL TITL 2 HAIRPIN MOTIF JRNL REF CELL(CAMBRIDGE,MASS.) V. 119 491 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15537539 JRNL DOI 10.1016/J.CELL.2004.10.018 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 37528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3327 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.027 ; 1.500 REMARK 3 ANGLE DISTANCE (A) : 2.300 ; 2.000 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHE 176 IN CHAIN B HAS VERY HIGH B REMARK 3 VALUES AND IS CLOSE TO THE END OF A SHORT HELIX. IT IS WELL REMARK 3 POSSIBLE, THAT THIS RESIDUE ADOPTS DIFFERENT CONFORMATIONS IN REMARK 3 THE VARIOUS MOLECULES OF THE ASYMMETRIC, SO THAT IN REALITY THE REMARK 3 REPORTED CLASHES ARE AVOIDED. THE HIGH B VALUES AND THE WEAK REMARK 3 VISIBLE ELECTRON DENSITY PREVENT A CLEAR OBSERVATION IN THIS REMARK 3 REGARD. WE, THEREFORE, CHOSE TO REFINE A CONFORMATION THAT IS REMARK 3 MOST CONSISTENT WITH THE VISIBLE DENSITY AND CONFORMS WITH REMARK 3 STEREOCHEMICAL REQUIREMENTS. IT IS ALSO WORTH MENTIONING THAT, REMARK 3 FOR THE SECOND MOLECULE OF THIS HOMODIMER (CHAIN A), THIS REGION REMARK 3 SHOWS MUCH STRONGER ELECTRON DENSITY. THE STRUCTURAL MODEL OF REMARK 3 CHAIN A, THEREFORE, GIVES A VERY CLEAR, AND MUCH BETTER, REMARK 3 DESCRIPTION OF THIS REGION. CONSISTENTLY, WE SHOW IN OUR REMARK 3 PUBLICATION A SYMMETRY OPERATED HOMODIMER CONSISTING OF TWO REMARK 3 CHAIN A MODELS. REMARK 4 REMARK 4 1XLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37528 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48600 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LITHIUM SULFATE, TRIS, BETA REMARK 280 -OCTYL-GLUCOSIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.59950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.59950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER OF NON-CRYSTALLOGRAPHIC REMARK 300 SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 ASN A 187 REMARK 465 ILE A 188 REMARK 465 GLY A 189 REMARK 465 GLU A 190 REMARK 465 THR A 191 REMARK 465 HIS A 238 REMARK 465 ASP A 239 REMARK 465 ASP B 6 REMARK 465 ILE B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 THR B 10 REMARK 465 PRO B 11 REMARK 465 GLY B 12 REMARK 465 PHE B 77 REMARK 465 ILE B 78 REMARK 465 ASN B 79 REMARK 465 GLU B 80 REMARK 465 GLY B 81 REMARK 465 LYS B 82 REMARK 465 ASN B 83 REMARK 465 GLU B 84 REMARK 465 LEU B 85 REMARK 465 ASP B 86 REMARK 465 PRO B 87 REMARK 465 GLU B 88 REMARK 465 ALA B 89 REMARK 465 ASP B 90 REMARK 465 SER B 91 REMARK 465 ILE B 178 REMARK 465 LYS B 179 REMARK 465 SER B 180 REMARK 465 ALA B 181 REMARK 465 ASP B 182 REMARK 465 GLU B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 THR B 186 REMARK 465 ASN B 187 REMARK 465 ILE B 188 REMARK 465 GLY B 189 REMARK 465 GLU B 190 REMARK 465 THR B 191 REMARK 465 ASP B 192 REMARK 465 ASN B 193 REMARK 465 ILE B 194 REMARK 465 PHE B 195 REMARK 465 LEU B 196 REMARK 465 GLN B 197 REMARK 465 GLU B 198 REMARK 465 ILE B 199 REMARK 465 LEU B 200 REMARK 465 PRO B 201 REMARK 465 VAL B 202 REMARK 465 ASN B 203 REMARK 465 HIS B 238 REMARK 465 ASP B 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLU A 206 O HOH A 362 1.84 REMARK 500 O HOH B 248 O HOH B 343 1.97 REMARK 500 O HOH A 408 O HOH B 276 2.03 REMARK 500 CA ASN A 203 O HOH A 400 2.08 REMARK 500 O HOH A 246 O HOH A 399 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB PHE B 176 CE2 PHE B 176 2656 0.78 REMARK 500 CD2 PHE B 176 CD2 PHE B 176 2656 0.87 REMARK 500 CB PHE B 176 CZ PHE B 176 2656 0.98 REMARK 500 CG PHE B 176 CG PHE B 176 2656 1.08 REMARK 500 CG PHE B 176 CD2 PHE B 176 2656 1.13 REMARK 500 CD1 PHE B 176 CD1 PHE B 176 2656 1.21 REMARK 500 CG PHE B 176 CD1 PHE B 176 2656 1.60 REMARK 500 CG PHE B 176 CE2 PHE B 176 2656 1.71 REMARK 500 CB PHE B 176 CD2 PHE B 176 2656 1.77 REMARK 500 CB PHE B 176 CE1 PHE B 176 2656 1.96 REMARK 500 CA PHE B 176 CE2 PHE B 176 2656 2.04 REMARK 500 CD1 PHE B 176 CE1 PHE B 176 2656 2.04 REMARK 500 CG PHE B 176 CE1 PHE B 176 2656 2.05 REMARK 500 CG PHE B 176 CZ PHE B 176 2656 2.10 REMARK 500 CA PHE B 176 CZ PHE B 176 2656 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 25 CB SER A 25 OG 0.080 REMARK 500 MET A 158 CG MET A 158 SD 0.190 REMARK 500 ASP B 111 N ASP B 111 CA 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 137 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 ASN A 203 N - CA - C ANGL. DEV. = 22.7 DEGREES REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU B 48 CB - CG - CD1 ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 111 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 111 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 87.54 175.92 REMARK 500 GLU A 84 69.80 37.61 REMARK 500 LEU A 85 104.06 -55.87 REMARK 500 ASP A 86 -86.05 -20.84 REMARK 500 GLN A 119 -74.93 -107.97 REMARK 500 LEU A 130 15.50 54.06 REMARK 500 SER A 180 27.58 -77.21 REMARK 500 LEU A 196 -97.97 -81.59 REMARK 500 SER B 75 -3.11 -166.99 REMARK 500 GLN B 119 -77.96 -111.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 195 LEU A 196 -146.37 REMARK 500 PRO A 201 VAL A 202 -131.99 REMARK 500 VAL A 202 ASN A 203 -118.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 1XLY A 6 239 UNP P36068 YKN0_YEAST 6 239 DBREF 1XLY B 6 239 UNP P36068 YKN0_YEAST 6 239 SEQADV 1XLY SER A 14 UNP P36068 CYS 14 ENGINEERED MUTATION SEQADV 1XLY SER A 68 UNP P36068 CYS 68 ENGINEERED MUTATION SEQADV 1XLY SER A 106 UNP P36068 CYS 106 ENGINEERED MUTATION SEQADV 1XLY SER A 180 UNP P36068 CYS 180 ENGINEERED MUTATION SEQADV 1XLY SER B 14 UNP P36068 CYS 14 ENGINEERED MUTATION SEQADV 1XLY SER B 68 UNP P36068 CYS 68 ENGINEERED MUTATION SEQADV 1XLY SER B 106 UNP P36068 CYS 106 ENGINEERED MUTATION SEQADV 1XLY SER B 180 UNP P36068 CYS 180 ENGINEERED MUTATION SEQRES 1 A 234 ASP ILE LYS VAL THR PRO GLY THR SER GLU LEU VAL GLU SEQRES 2 A 234 GLN ILE LEU ALA LEU LEU SER ARG TYR LEU SER SER TYR SEQRES 3 A 234 ILE HIS VAL LEU ASN LYS PHE ILE SER HIS LEU ARG ARG SEQRES 4 A 234 VAL ALA THR LEU ARG PHE GLU ARG THR THR LEU ILE LYS SEQRES 5 A 234 PHE VAL LYS LYS LEU ARG PHE TYR ASN ASP SER VAL LEU SEQRES 6 A 234 SER TYR ASN ALA SER GLU PHE ILE ASN GLU GLY LYS ASN SEQRES 7 A 234 GLU LEU ASP PRO GLU ALA ASP SER PHE ASP LYS VAL ILE SEQRES 8 A 234 LEU PRO ILE ALA SER MET PHE VAL LYS SER VAL GLU THR SEQRES 9 A 234 PHE ASP LEU LEU ASN TYR TYR LEU THR GLN SER LEU GLN SEQRES 10 A 234 LYS GLU ILE LEU SER LYS THR LEU ASN GLU ASP LEU THR SEQRES 11 A 234 LEU THR ALA GLU SER ILE LEU ALA ILE ASP ASP THR TYR SEQRES 12 A 234 ASN HIS PHE VAL LYS PHE SER GLN TRP MET ILE GLU SER SEQRES 13 A 234 LEU ARG ILE GLY SER ASN LEU LEU ASP LEU GLU VAL VAL SEQRES 14 A 234 GLN PHE ALA ILE LYS SER ALA ASP GLU ASP GLY THR ASN SEQRES 15 A 234 ILE GLY GLU THR ASP ASN ILE PHE LEU GLN GLU ILE LEU SEQRES 16 A 234 PRO VAL ASN SER GLU GLU GLU PHE GLN THR LEU SER ALA SEQRES 17 A 234 ALA TRP HIS SER ILE LEU ASP GLY LYS LEU SER ALA LEU SEQRES 18 A 234 ASP GLU GLU PHE ASP VAL VAL ALA THR LYS TRP HIS ASP SEQRES 1 B 234 ASP ILE LYS VAL THR PRO GLY THR SER GLU LEU VAL GLU SEQRES 2 B 234 GLN ILE LEU ALA LEU LEU SER ARG TYR LEU SER SER TYR SEQRES 3 B 234 ILE HIS VAL LEU ASN LYS PHE ILE SER HIS LEU ARG ARG SEQRES 4 B 234 VAL ALA THR LEU ARG PHE GLU ARG THR THR LEU ILE LYS SEQRES 5 B 234 PHE VAL LYS LYS LEU ARG PHE TYR ASN ASP SER VAL LEU SEQRES 6 B 234 SER TYR ASN ALA SER GLU PHE ILE ASN GLU GLY LYS ASN SEQRES 7 B 234 GLU LEU ASP PRO GLU ALA ASP SER PHE ASP LYS VAL ILE SEQRES 8 B 234 LEU PRO ILE ALA SER MET PHE VAL LYS SER VAL GLU THR SEQRES 9 B 234 PHE ASP LEU LEU ASN TYR TYR LEU THR GLN SER LEU GLN SEQRES 10 B 234 LYS GLU ILE LEU SER LYS THR LEU ASN GLU ASP LEU THR SEQRES 11 B 234 LEU THR ALA GLU SER ILE LEU ALA ILE ASP ASP THR TYR SEQRES 12 B 234 ASN HIS PHE VAL LYS PHE SER GLN TRP MET ILE GLU SER SEQRES 13 B 234 LEU ARG ILE GLY SER ASN LEU LEU ASP LEU GLU VAL VAL SEQRES 14 B 234 GLN PHE ALA ILE LYS SER ALA ASP GLU ASP GLY THR ASN SEQRES 15 B 234 ILE GLY GLU THR ASP ASN ILE PHE LEU GLN GLU ILE LEU SEQRES 16 B 234 PRO VAL ASN SER GLU GLU GLU PHE GLN THR LEU SER ALA SEQRES 17 B 234 ALA TRP HIS SER ILE LEU ASP GLY LYS LEU SER ALA LEU SEQRES 18 B 234 ASP GLU GLU PHE ASP VAL VAL ALA THR LYS TRP HIS ASP FORMUL 3 HOH *302(H2 O) HELIX 1 1 THR A 13 ARG A 44 1 32 HELIX 2 2 ARG A 49 ILE A 78 1 30 HELIX 3 3 PHE A 92 THR A 129 1 38 HELIX 4 4 LEU A 136 LEU A 162 1 27 HELIX 5 5 GLU A 172 ASP A 182 1 11 HELIX 6 6 GLU A 205 TRP A 237 1 33 HELIX 7 7 THR B 13 ARG B 44 1 32 HELIX 8 8 ARG B 49 GLU B 76 1 28 HELIX 9 9 PHE B 92 THR B 129 1 38 HELIX 10 10 LEU B 136 LEU B 162 1 27 HELIX 11 11 GLU B 172 ALA B 177 1 6 HELIX 12 12 GLU B 205 TRP B 237 1 33 CRYST1 97.199 103.647 56.733 90.00 110.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010288 0.000000 0.003849 0.00000 SCALE2 0.000000 0.009648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018819 0.00000