HEADER HYDROLASE 01-OCT-04 1XM8 TITLE X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE TITLE 2 AT2G31350 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE II; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G31350; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGLX2-5/PT7-7 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CESG, KEYWDS 2 AT2G31350, METALLO-HYDROLASE, ZINC/IRON BINUCLEAR CENTER, B- KEYWDS 3 LACTAMASE FOLD, THIOESTER HYDROLASE, MITOCHONDRIAL ISOZYME, CENTER KEYWDS 4 FOR EUKARYOTIC STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 8 14-FEB-24 1XM8 1 REMARK SEQADV LINK REVDAT 7 11-OCT-17 1XM8 1 REMARK REVDAT 6 19-MAY-09 1XM8 1 JRNL REVDAT 5 24-FEB-09 1XM8 1 VERSN REVDAT 4 24-JUN-08 1XM8 1 ATOM REVDAT 3 12-FEB-08 1XM8 1 REMARK REVDAT 2 01-FEB-05 1XM8 1 AUTHOR KEYWDS REMARK REVDAT 1 12-OCT-04 1XM8 0 JRNL AUTH G.P.MARASINGHE,I.M.SANDER,B.BENNETT,G.PERIYANNAN,K.W.YANG, JRNL AUTH 2 C.A.MAKAROFF,M.W.CROWDER JRNL TITL STRUCTURAL STUDIES ON A MITOCHONDRIAL GLYOXALASE II. JRNL REF J.BIOL.CHEM. V. 280 40668 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16227621 JRNL DOI 10.1074/JBC.M509748200 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 49295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 547 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44200 REMARK 3 B22 (A**2) : 0.20600 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.924 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4131 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3726 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5573 ; 1.746 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8743 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.794 ;24.293 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;14.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 625 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4521 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 854 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3876 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2031 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2324 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 414 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.116 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.280 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3270 ; 2.284 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1030 ; 0.379 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4138 ; 2.633 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1780 ; 4.976 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1435 ; 6.477 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ; 2.033 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2 ; 2.927 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE-CRYSTAL REMARK 200 OPTICS : BENT CYLINDRICAL SI- MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51949 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.742 REMARK 200 RESOLUTION RANGE LOW (A) : 33.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 0.100 SODIUM REMARK 280 ACETATE, 16 PERCENT PEG 4K, 10 PERCENT PEG 400, 0.200 GLYCINE, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.39100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MOMOMER, TWO COPIES IN THE REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 889 O HOH B 1053 1.91 REMARK 500 O HOH B 1015 O HOH B 1049 1.98 REMARK 500 OD1 ASP B 108 O HOH B 1016 2.04 REMARK 500 O HOH A 965 O HOH A 1176 2.05 REMARK 500 O HOH B 850 O HOH B 1064 2.11 REMARK 500 O HOH B 917 O HOH B 1054 2.12 REMARK 500 O HOH A 1163 O HOH A 1166 2.14 REMARK 500 O HOH A 1105 O HOH A 1170 2.17 REMARK 500 O HOH B 1018 O HOH B 1056 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -138.02 48.63 REMARK 500 ASP A 11 22.05 -154.94 REMARK 500 THR A 209 -168.23 -101.34 REMARK 500 LEU B 9 -131.87 51.14 REMARK 500 ASP B 11 16.46 -150.47 REMARK 500 PRO B 30 92.97 -69.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HIS A 56 ND1 98.2 REMARK 620 3 HIS A 112 NE2 106.5 95.0 REMARK 620 4 ASP A 131 OD2 90.1 170.9 86.0 REMARK 620 5 HOH A 901 O 115.5 103.0 130.7 69.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 HIS A 59 NE2 86.9 REMARK 620 3 ASP A 131 OD2 167.8 96.9 REMARK 620 4 HIS A 169 NE2 88.1 112.9 101.0 REMARK 620 5 HOH A 901 O 84.3 105.6 83.5 140.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 NE2 REMARK 620 2 HIS B 56 ND1 98.5 REMARK 620 3 HIS B 112 NE2 102.5 96.1 REMARK 620 4 ASP B 131 OD2 89.0 172.0 85.1 REMARK 620 5 HOH B 802 O 119.3 104.0 129.4 69.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 704 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD2 REMARK 620 2 HIS B 59 NE2 86.8 REMARK 620 3 ASP B 131 OD2 170.8 95.3 REMARK 620 4 HIS B 169 NE2 87.9 112.2 99.5 REMARK 620 5 HOH B 802 O 89.6 106.6 81.2 141.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.9639 RELATED DB: TARGETDB DBREF 1XM8 A 1 254 GB 20465675 AAM20306 71 324 DBREF 1XM8 B 1 254 GB 20465675 AAM20306 71 324 SEQADV 1XM8 MET A 1 GB 20465675 LEU 71 CLONING ARTIFACT SEQADV 1XM8 MET B 1 GB 20465675 LEU 71 CLONING ARTIFACT SEQRES 1 A 254 MET GLN ILE GLU LEU VAL PRO CYS LEU LYS ASP ASN TYR SEQRES 2 A 254 ALA TYR ILE LEU HIS ASP GLU ASP THR GLY THR VAL GLY SEQRES 3 A 254 VAL VAL ASP PRO SER GLU ALA GLU PRO ILE ILE ASP SER SEQRES 4 A 254 LEU LYS ARG SER GLY ARG ASN LEU THR TYR ILE LEU ASN SEQRES 5 A 254 THR HIS HIS HIS TYR ASP HIS THR GLY GLY ASN LEU GLU SEQRES 6 A 254 LEU LYS ASP ARG TYR GLY ALA LYS VAL ILE GLY SER ALA SEQRES 7 A 254 MET ASP LYS ASP ARG ILE PRO GLY ILE ASP MET ALA LEU SEQRES 8 A 254 LYS ASP GLY ASP LYS TRP MET PHE ALA GLY HIS GLU VAL SEQRES 9 A 254 HIS VAL MET ASP THR PRO GLY HIS THR LYS GLY HIS ILE SEQRES 10 A 254 SER LEU TYR PHE PRO GLY SER ARG ALA ILE PHE THR GLY SEQRES 11 A 254 ASP THR MET PHE SER LEU SER CYS GLY LYS LEU PHE GLU SEQRES 12 A 254 GLY THR PRO LYS GLN MET LEU ALA SER LEU GLN LYS ILE SEQRES 13 A 254 THR SER LEU PRO ASP ASP THR SER ILE TYR CYS GLY HIS SEQRES 14 A 254 GLU TYR THR LEU SER ASN SER LYS PHE ALA LEU SER LEU SEQRES 15 A 254 GLU PRO ASN ASN GLU VAL LEU GLN SER TYR ALA ALA HIS SEQRES 16 A 254 VAL ALA GLU LEU ARG SER LYS LYS LEU PRO THR ILE PRO SEQRES 17 A 254 THR THR VAL LYS MET GLU LYS ALA CYS ASN PRO PHE LEU SEQRES 18 A 254 ARG SER SER ASN THR ASP ILE ARG ARG ALA LEU ARG ILE SEQRES 19 A 254 PRO GLU ALA ALA ASP GLU ALA GLU ALA LEU GLY ILE ILE SEQRES 20 A 254 ARG LYS ALA LYS ASP ASP PHE SEQRES 1 B 254 MET GLN ILE GLU LEU VAL PRO CYS LEU LYS ASP ASN TYR SEQRES 2 B 254 ALA TYR ILE LEU HIS ASP GLU ASP THR GLY THR VAL GLY SEQRES 3 B 254 VAL VAL ASP PRO SER GLU ALA GLU PRO ILE ILE ASP SER SEQRES 4 B 254 LEU LYS ARG SER GLY ARG ASN LEU THR TYR ILE LEU ASN SEQRES 5 B 254 THR HIS HIS HIS TYR ASP HIS THR GLY GLY ASN LEU GLU SEQRES 6 B 254 LEU LYS ASP ARG TYR GLY ALA LYS VAL ILE GLY SER ALA SEQRES 7 B 254 MET ASP LYS ASP ARG ILE PRO GLY ILE ASP MET ALA LEU SEQRES 8 B 254 LYS ASP GLY ASP LYS TRP MET PHE ALA GLY HIS GLU VAL SEQRES 9 B 254 HIS VAL MET ASP THR PRO GLY HIS THR LYS GLY HIS ILE SEQRES 10 B 254 SER LEU TYR PHE PRO GLY SER ARG ALA ILE PHE THR GLY SEQRES 11 B 254 ASP THR MET PHE SER LEU SER CYS GLY LYS LEU PHE GLU SEQRES 12 B 254 GLY THR PRO LYS GLN MET LEU ALA SER LEU GLN LYS ILE SEQRES 13 B 254 THR SER LEU PRO ASP ASP THR SER ILE TYR CYS GLY HIS SEQRES 14 B 254 GLU TYR THR LEU SER ASN SER LYS PHE ALA LEU SER LEU SEQRES 15 B 254 GLU PRO ASN ASN GLU VAL LEU GLN SER TYR ALA ALA HIS SEQRES 16 B 254 VAL ALA GLU LEU ARG SER LYS LYS LEU PRO THR ILE PRO SEQRES 17 B 254 THR THR VAL LYS MET GLU LYS ALA CYS ASN PRO PHE LEU SEQRES 18 B 254 ARG SER SER ASN THR ASP ILE ARG ARG ALA LEU ARG ILE SEQRES 19 B 254 PRO GLU ALA ALA ASP GLU ALA GLU ALA LEU GLY ILE ILE SEQRES 20 B 254 ARG LYS ALA LYS ASP ASP PHE HET ZN A 700 1 HET FE A 701 1 HET ACY A 800 4 HET PEG A 900 7 HET ZN B 703 1 HET FE B 704 1 HET ACY B 801 4 HETNAM ZN ZINC ION HETNAM FE FE (III) ION HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FE 2(FE 3+) FORMUL 5 ACY 2(C2 H4 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 10 HOH *547(H2 O) HELIX 1 GLU A 32 GLY A 44 1 13 HELIX 2 HIS A 56 GLY A 61 1 6 HELIX 3 GLY A 62 GLY A 71 1 10 HELIX 4 MET A 79 ILE A 84 1 6 HELIX 5 PRO A 122 SER A 124 1 3 HELIX 6 THR A 145 SER A 158 1 14 HELIX 7 TYR A 171 GLU A 183 1 13 HELIX 8 ASN A 186 LYS A 202 1 17 HELIX 9 VAL A 211 ASN A 218 1 8 HELIX 10 PRO A 219 ARG A 222 1 4 HELIX 11 ASN A 225 ARG A 233 1 9 HELIX 12 ASP A 239 ASP A 253 1 15 HELIX 13 GLU B 32 GLY B 44 1 13 HELIX 14 HIS B 56 GLY B 61 1 6 HELIX 15 GLY B 62 GLY B 71 1 10 HELIX 16 MET B 79 LYS B 81 1 3 HELIX 17 PRO B 122 SER B 124 1 3 HELIX 18 THR B 145 SER B 158 1 14 HELIX 19 TYR B 171 GLU B 183 1 13 HELIX 20 ASN B 186 LYS B 202 1 17 HELIX 21 VAL B 211 ASN B 218 1 8 HELIX 22 PRO B 219 ARG B 222 1 4 HELIX 23 ASN B 225 ARG B 233 1 9 HELIX 24 ASP B 239 ASP B 253 1 15 SHEET 1 A 6 GLN A 2 CYS A 8 0 SHEET 2 A 6 ASN A 12 HIS A 18 -1 SHEET 3 A 6 VAL A 25 VAL A 28 -1 SHEET 4 A 6 TYR A 49 LEU A 51 1 SHEET 5 A 6 LYS A 73 SER A 77 1 SHEET 6 A 6 ILE A 87 LEU A 91 1 SHEET 1 B 6 LYS A 96 PHE A 99 0 SHEET 2 B 6 HIS A 102 ASP A 108 -1 SHEET 3 B 6 ILE A 117 PHE A 121 -1 SHEET 4 B 6 ALA A 126 GLY A 130 -1 SHEET 5 B 6 SER A 164 CYS A 167 1 SHEET 6 B 6 THR A 209 THR A 210 -1 SHEET 1 C 2 MET A 133 PHE A 134 0 SHEET 2 C 2 SER A 137 CYS A 138 -1 SHEET 1 D 6 GLN B 2 CYS B 8 0 SHEET 2 D 6 ASN B 12 HIS B 18 -1 SHEET 3 D 6 VAL B 25 VAL B 28 -1 SHEET 4 D 6 TYR B 49 LEU B 51 1 SHEET 5 D 6 LYS B 73 SER B 77 1 SHEET 6 D 6 ILE B 87 LEU B 91 1 SHEET 1 E 6 LYS B 96 PHE B 99 0 SHEET 2 E 6 HIS B 102 ASP B 108 -1 SHEET 3 E 6 ILE B 117 PHE B 121 -1 SHEET 4 E 6 ALA B 126 GLY B 130 -1 SHEET 5 E 6 SER B 164 CYS B 167 1 SHEET 6 E 6 THR B 209 THR B 210 -1 SHEET 1 F 2 MET B 133 PHE B 134 0 SHEET 2 F 2 SER B 137 CYS B 138 -1 LINK NE2 HIS A 54 ZN ZN A 700 1555 1555 2.09 LINK ND1 HIS A 56 ZN ZN A 700 1555 1555 2.07 LINK OD2 ASP A 58 FE FE A 701 1555 1555 2.10 LINK NE2 HIS A 59 FE FE A 701 1555 1555 1.97 LINK NE2 HIS A 112 ZN ZN A 700 1555 1555 2.10 LINK OD2 ASP A 131 ZN ZN A 700 1555 1555 2.69 LINK OD2 ASP A 131 FE FE A 701 1555 1555 2.10 LINK NE2 HIS A 169 FE FE A 701 1555 1555 2.00 LINK ZN ZN A 700 O HOH A 901 1555 1555 2.04 LINK FE FE A 701 O HOH A 901 1555 1555 2.05 LINK NE2 HIS B 54 ZN ZN B 703 1555 1555 2.12 LINK ND1 HIS B 56 ZN ZN B 703 1555 1555 2.12 LINK OD2 ASP B 58 FE FE B 704 1555 1555 2.21 LINK NE2 HIS B 59 FE FE B 704 1555 1555 2.03 LINK NE2 HIS B 112 ZN ZN B 703 1555 1555 2.15 LINK OD2 ASP B 131 ZN ZN B 703 1555 1555 2.69 LINK OD2 ASP B 131 FE FE B 704 1555 1555 2.09 LINK NE2 HIS B 169 FE FE B 704 1555 1555 2.05 LINK ZN ZN B 703 O HOH B 802 1555 1555 1.90 LINK FE FE B 704 O HOH B 802 1555 1555 2.05 CISPEP 1 ILE A 207 PRO A 208 0 11.15 CISPEP 2 ILE B 207 PRO B 208 0 12.69 SITE 1 AC1 6 HIS A 54 HIS A 56 HIS A 112 ASP A 131 SITE 2 AC1 6 FE A 701 HOH A 901 SITE 1 AC2 6 ASP A 58 HIS A 59 ASP A 131 HIS A 169 SITE 2 AC2 6 ZN A 700 HOH A 901 SITE 1 AC3 6 HIS B 54 HIS B 56 HIS B 112 ASP B 131 SITE 2 AC3 6 FE B 704 HOH B 802 SITE 1 AC4 6 ASP B 58 HIS B 59 ASP B 131 HIS B 169 SITE 2 AC4 6 ZN B 703 HOH B 802 SITE 1 AC5 7 PHE A 134 SER A 137 CYS A 138 LYS A 140 SITE 2 AC5 7 ARG A 248 LYS A 251 HOH A1099 SITE 1 AC6 2 LYS A 202 HOH A1113 SITE 1 AC7 7 PHE B 134 SER B 137 CYS B 138 LYS B 140 SITE 2 AC7 7 ARG B 248 LYS B 251 HOH B 968 CRYST1 68.494 58.782 69.049 90.00 109.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014600 0.000000 0.005090 0.00000 SCALE2 0.000000 0.017012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015337 0.00000