HEADER CHAPERONE 04-OCT-04 1XML TITLE STRUCTURE OF HUMAN DCPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK-LIKE PROTEIN 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DCPS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS SCAVENGER DECAPPING ENZYME, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR N.CHEN,H.SONG REVDAT 4 10-NOV-21 1XML 1 REMARK SEQADV REVDAT 3 13-JUL-11 1XML 1 VERSN REVDAT 2 24-FEB-09 1XML 1 VERSN REVDAT 1 22-MAR-05 1XML 0 JRNL AUTH N.CHEN,M.A.WALSH,Y.LIU,R.PARKER,H.SONG JRNL TITL CRYSTAL STRUCTURES OF HUMAN DCPS IN LIGAND-FREE AND JRNL TITL 2 M7GDP-BOUND FORMS SUGGEST A DYNAMIC MECHANISM FOR SCAVENGER JRNL TITL 3 MRNA DECAPPING. JRNL REF J.MOL.BIOL. V. 347 707 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15769464 JRNL DOI 10.1016/J.JMB.2005.01.062 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4830 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4416 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6548 ; 1.142 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10253 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5277 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 995 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1016 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5285 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3014 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 331 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2836 ; 0.588 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4607 ; 1.145 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1994 ; 1.624 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1941 ; 2.751 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1842 38.2574 25.0771 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1393 REMARK 3 T33: 0.1268 T12: 0.0065 REMARK 3 T13: 0.0104 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.0470 L22: 0.7406 REMARK 3 L33: 0.4276 L12: 0.0867 REMARK 3 L13: 0.2254 L23: -0.1083 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.1235 S13: -0.1127 REMARK 3 S21: -0.0719 S22: -0.0337 S23: -0.0080 REMARK 3 S31: -0.0035 S32: 0.0513 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 146 B 336 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0195 21.4372 43.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1557 REMARK 3 T33: 0.1463 T12: -0.0028 REMARK 3 T13: 0.0022 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.4458 L22: 0.9295 REMARK 3 L33: 0.3772 L12: -0.5388 REMARK 3 L13: 0.4126 L23: -0.4403 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: 0.0051 S13: -0.1219 REMARK 3 S21: -0.0602 S22: 0.0837 S23: 0.1000 REMARK 3 S31: 0.0741 S32: -0.0213 S33: -0.1408 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 145 REMARK 3 RESIDUE RANGE : B 40 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1201 9.0972 10.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2016 REMARK 3 T33: 0.0088 T12: 0.0107 REMARK 3 T13: -0.0076 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.3509 L22: 3.8497 REMARK 3 L33: 3.8825 L12: 1.3112 REMARK 3 L13: -1.4579 L23: -3.3147 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.0235 S13: 0.1217 REMARK 3 S21: -0.0999 S22: 0.2679 S23: 0.3145 REMARK 3 S31: -0.0377 S32: -0.1842 S33: -0.2376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE DIP100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 72.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KH2PO4, NACL, PEG3350, PH 4.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.96100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.93150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.96100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.93150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FUNCTIONAL UNIT IS DIMER. THERE IS ONE FUNCTIONAL UNIT IN REMARK 300 THE ASSYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 728 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 7 REMARK 465 LEU B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 ARG B 11 REMARK 465 LYS B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 LEU B 15 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 GLU B 18 REMARK 465 GLU B 19 REMARK 465 ALA B 20 REMARK 465 HIS B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 LYS B 28 REMARK 465 GLU B 29 REMARK 465 ALA B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 32 REMARK 465 GLY B 33 REMARK 465 ASN B 34 REMARK 465 GLY B 35 REMARK 465 THR B 36 REMARK 465 CYS B 37 REMARK 465 ALA B 38 REMARK 465 PRO B 39 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 SER B 72 REMARK 465 GLY B 73 REMARK 465 ASP B 74 REMARK 465 GLY B 75 REMARK 465 ASP B 76 REMARK 465 GLY B 77 REMARK 465 GLU B 286 REMARK 465 ALA B 287 REMARK 465 PRO B 288 REMARK 465 GLY B 289 REMARK 465 SER B 290 REMARK 465 GLY B 291 REMARK 465 VAL B 292 REMARK 465 SER B 337 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 ARG A 11 REMARK 465 LYS A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 VAL A 32 REMARK 465 GLY A 33 REMARK 465 ASN A 34 REMARK 465 GLY A 35 REMARK 465 THR A 36 REMARK 465 CYS A 37 REMARK 465 ALA A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 ASP A 76 REMARK 465 GLY A 77 REMARK 465 GLU A 286 REMARK 465 ALA A 287 REMARK 465 PRO A 288 REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 GLU A 293 REMARK 465 SER A 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 336 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 261 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 325 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 101 85.05 8.53 REMARK 500 ASN B 110 101.29 -164.81 REMARK 500 ASP B 111 -97.12 67.32 REMARK 500 ILE B 161 -56.09 -121.07 REMARK 500 SER B 170 61.54 -114.86 REMARK 500 SER B 229 -175.57 -173.80 REMARK 500 LEU B 270 107.47 18.54 REMARK 500 TYR B 274 60.16 -108.56 REMARK 500 ARG B 294 -40.56 -139.34 REMARK 500 ASP A 111 -103.81 54.96 REMARK 500 ILE A 161 -60.21 -125.40 REMARK 500 SER A 170 57.88 -106.34 REMARK 500 SER A 229 -175.08 -172.53 REMARK 500 TYR A 274 58.00 -108.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 269 LEU B 270 -90.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XMM RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO M7GDP DBREF 1XML B 1 337 GB 30138167 AAL77216 1 337 DBREF 1XML A 1 337 GB 30138167 AAL77216 1 337 SEQADV 1XML GLY B -4 GB 30138167 CLONING ARTIFACT SEQADV 1XML PRO B -3 GB 30138167 CLONING ARTIFACT SEQADV 1XML LEU B -2 GB 30138167 CLONING ARTIFACT SEQADV 1XML GLY B -1 GB 30138167 CLONING ARTIFACT SEQADV 1XML SER B 0 GB 30138167 CLONING ARTIFACT SEQADV 1XML MET B 206 GB 30138167 LEU 206 ENGINEERED MUTATION SEQADV 1XML MET B 317 GB 30138167 LEU 317 ENGINEERED MUTATION SEQADV 1XML GLY A -4 GB 30138167 CLONING ARTIFACT SEQADV 1XML PRO A -3 GB 30138167 CLONING ARTIFACT SEQADV 1XML LEU A -2 GB 30138167 CLONING ARTIFACT SEQADV 1XML GLY A -1 GB 30138167 CLONING ARTIFACT SEQADV 1XML SER A 0 GB 30138167 CLONING ARTIFACT SEQADV 1XML MET A 206 GB 30138167 LEU 206 ENGINEERED MUTATION SEQADV 1XML MET A 317 GB 30138167 LEU 317 ENGINEERED MUTATION SEQRES 1 B 342 GLY PRO LEU GLY SER MET ALA ASP ALA ALA PRO GLN LEU SEQRES 2 B 342 GLY LYS ARG LYS ARG GLU LEU ASP VAL GLU GLU ALA HIS SEQRES 3 B 342 ALA ALA SER THR GLU GLU LYS GLU ALA GLY VAL GLY ASN SEQRES 4 B 342 GLY THR CYS ALA PRO VAL ARG LEU PRO PHE SER GLY PHE SEQRES 5 B 342 ARG LEU GLN LYS VAL LEU ARG GLU SER ALA ARG ASP LYS SEQRES 6 B 342 ILE ILE PHE LEU HIS GLY LYS VAL ASN GLU ALA SER GLY SEQRES 7 B 342 ASP GLY ASP GLY GLU ASP ALA VAL VAL ILE LEU GLU LYS SEQRES 8 B 342 THR PRO PHE GLN VAL GLU GLN VAL ALA GLN LEU LEU THR SEQRES 9 B 342 GLY SER PRO GLU LEU GLN LEU GLN PHE SER ASN ASP ILE SEQRES 10 B 342 TYR SER THR TYR HIS LEU PHE PRO PRO ARG GLN LEU ASN SEQRES 11 B 342 ASP VAL LYS THR THR VAL VAL TYR PRO ALA THR GLU LYS SEQRES 12 B 342 HIS LEU GLN LYS TYR LEU ARG GLN ASP LEU ARG LEU ILE SEQRES 13 B 342 ARG GLU THR GLY ASP ASP TYR ARG ASN ILE THR LEU PRO SEQRES 14 B 342 HIS LEU GLU SER GLN SER LEU SER ILE GLN TRP VAL TYR SEQRES 15 B 342 ASN ILE LEU ASP LYS LYS ALA GLU ALA ASP ARG ILE VAL SEQRES 16 B 342 PHE GLU ASN PRO ASP PRO SER ASP GLY PHE VAL LEU ILE SEQRES 17 B 342 PRO ASP MET LYS TRP ASN GLN GLN GLN LEU ASP ASP LEU SEQRES 18 B 342 TYR LEU ILE ALA ILE CYS HIS ARG ARG GLY ILE ARG SER SEQRES 19 B 342 LEU ARG ASP LEU THR PRO GLU HIS LEU PRO LEU LEU ARG SEQRES 20 B 342 ASN ILE LEU HIS GLN GLY GLN GLU ALA ILE LEU GLN ARG SEQRES 21 B 342 TYR ARG MET LYS GLY ASP HIS LEU ARG VAL TYR LEU HIS SEQRES 22 B 342 TYR LEU PRO SER TYR TYR HIS LEU HIS VAL HIS PHE THR SEQRES 23 B 342 ALA LEU GLY PHE GLU ALA PRO GLY SER GLY VAL GLU ARG SEQRES 24 B 342 ALA HIS LEU LEU ALA GLU VAL ILE GLU ASN LEU GLU CYS SEQRES 25 B 342 ASP PRO ARG HIS TYR GLN GLN ARG THR MET THR PHE ALA SEQRES 26 B 342 LEU ARG ALA ASP ASP PRO LEU LEU LYS LEU LEU GLN GLU SEQRES 27 B 342 ALA GLN GLN SER SEQRES 1 A 342 GLY PRO LEU GLY SER MET ALA ASP ALA ALA PRO GLN LEU SEQRES 2 A 342 GLY LYS ARG LYS ARG GLU LEU ASP VAL GLU GLU ALA HIS SEQRES 3 A 342 ALA ALA SER THR GLU GLU LYS GLU ALA GLY VAL GLY ASN SEQRES 4 A 342 GLY THR CYS ALA PRO VAL ARG LEU PRO PHE SER GLY PHE SEQRES 5 A 342 ARG LEU GLN LYS VAL LEU ARG GLU SER ALA ARG ASP LYS SEQRES 6 A 342 ILE ILE PHE LEU HIS GLY LYS VAL ASN GLU ALA SER GLY SEQRES 7 A 342 ASP GLY ASP GLY GLU ASP ALA VAL VAL ILE LEU GLU LYS SEQRES 8 A 342 THR PRO PHE GLN VAL GLU GLN VAL ALA GLN LEU LEU THR SEQRES 9 A 342 GLY SER PRO GLU LEU GLN LEU GLN PHE SER ASN ASP ILE SEQRES 10 A 342 TYR SER THR TYR HIS LEU PHE PRO PRO ARG GLN LEU ASN SEQRES 11 A 342 ASP VAL LYS THR THR VAL VAL TYR PRO ALA THR GLU LYS SEQRES 12 A 342 HIS LEU GLN LYS TYR LEU ARG GLN ASP LEU ARG LEU ILE SEQRES 13 A 342 ARG GLU THR GLY ASP ASP TYR ARG ASN ILE THR LEU PRO SEQRES 14 A 342 HIS LEU GLU SER GLN SER LEU SER ILE GLN TRP VAL TYR SEQRES 15 A 342 ASN ILE LEU ASP LYS LYS ALA GLU ALA ASP ARG ILE VAL SEQRES 16 A 342 PHE GLU ASN PRO ASP PRO SER ASP GLY PHE VAL LEU ILE SEQRES 17 A 342 PRO ASP MET LYS TRP ASN GLN GLN GLN LEU ASP ASP LEU SEQRES 18 A 342 TYR LEU ILE ALA ILE CYS HIS ARG ARG GLY ILE ARG SER SEQRES 19 A 342 LEU ARG ASP LEU THR PRO GLU HIS LEU PRO LEU LEU ARG SEQRES 20 A 342 ASN ILE LEU HIS GLN GLY GLN GLU ALA ILE LEU GLN ARG SEQRES 21 A 342 TYR ARG MET LYS GLY ASP HIS LEU ARG VAL TYR LEU HIS SEQRES 22 A 342 TYR LEU PRO SER TYR TYR HIS LEU HIS VAL HIS PHE THR SEQRES 23 A 342 ALA LEU GLY PHE GLU ALA PRO GLY SER GLY VAL GLU ARG SEQRES 24 A 342 ALA HIS LEU LEU ALA GLU VAL ILE GLU ASN LEU GLU CYS SEQRES 25 A 342 ASP PRO ARG HIS TYR GLN GLN ARG THR MET THR PHE ALA SEQRES 26 A 342 LEU ARG ALA ASP ASP PRO LEU LEU LYS LEU LEU GLN GLU SEQRES 27 A 342 ALA GLN GLN SER HET PO4 B 602 5 HET PO4 A 601 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *454(H2 O) HELIX 1 1 GLN B 90 GLY B 100 1 11 HELIX 2 2 PRO B 121 ASN B 125 5 5 HELIX 3 3 THR B 136 LEU B 144 1 9 HELIX 4 4 THR B 154 ILE B 161 1 8 HELIX 5 5 ILE B 161 GLN B 169 1 9 HELIX 6 6 ILE B 173 ASP B 181 1 9 HELIX 7 7 GLU B 185 ILE B 189 5 5 HELIX 8 8 GLN B 212 ASP B 215 5 4 HELIX 9 9 SER B 229 LEU B 233 5 5 HELIX 10 10 THR B 234 GLU B 236 5 3 HELIX 11 11 HIS B 237 ARG B 257 1 21 HELIX 12 12 LYS B 259 ASP B 261 5 3 HELIX 13 13 LEU B 298 ASP B 308 1 11 HELIX 14 14 ARG B 310 ARG B 315 1 6 HELIX 15 15 ASP B 325 GLN B 336 1 12 HELIX 16 16 GLN A 90 GLY A 100 1 11 HELIX 17 17 PRO A 121 ASN A 125 5 5 HELIX 18 18 THR A 136 LEU A 144 1 9 HELIX 19 19 THR A 154 ILE A 161 1 8 HELIX 20 20 ILE A 161 GLN A 169 1 9 HELIX 21 21 ILE A 173 ASP A 181 1 9 HELIX 22 22 GLU A 185 ILE A 189 5 5 HELIX 23 23 GLN A 212 ASP A 215 5 4 HELIX 24 24 SER A 229 LEU A 233 5 5 HELIX 25 25 THR A 234 GLU A 236 5 3 HELIX 26 26 HIS A 237 ARG A 257 1 21 HELIX 27 27 LYS A 259 ASP A 261 5 3 HELIX 28 28 LEU A 298 ASP A 308 1 11 HELIX 29 29 ARG A 310 ARG A 315 1 6 HELIX 30 30 ASP A 325 GLN A 336 1 12 SHEET 1 A 6 ARG B 48 SER B 56 0 SHEET 2 A 6 ILE B 61 LYS B 67 -1 O PHE B 63 N ARG B 54 SHEET 3 A 6 ASP B 79 LYS B 86 -1 O ALA B 80 N GLY B 66 SHEET 4 A 6 VAL B 127 VAL B 132 -1 O THR B 130 N ILE B 83 SHEET 5 A 6 TYR A 113 PHE A 119 -1 O SER A 114 N VAL B 131 SHEET 6 A 6 GLU A 103 ASN A 110 -1 N PHE A 108 O THR A 115 SHEET 1 B 6 LEU B 104 ASN B 110 0 SHEET 2 B 6 TYR B 113 LEU B 118 -1 O TYR B 113 N ASN B 110 SHEET 3 B 6 VAL A 127 VAL A 132 -1 O VAL A 131 N SER B 114 SHEET 4 B 6 ASP A 79 LYS A 86 -1 N VAL A 81 O VAL A 132 SHEET 5 B 6 ILE A 61 LYS A 67 -1 N LEU A 64 O VAL A 82 SHEET 6 B 6 ARG A 48 SER A 56 -1 N ARG A 54 O PHE A 63 SHEET 1 C 2 LEU B 148 GLU B 153 0 SHEET 2 C 2 MET B 317 ARG B 322 -1 O MET B 317 N GLU B 153 SHEET 1 D 6 PHE B 191 ASN B 193 0 SHEET 2 D 6 PHE B 200 PRO B 204 -1 O LEU B 202 N PHE B 191 SHEET 3 D 6 TYR B 217 CYS B 222 -1 O ILE B 219 N ILE B 203 SHEET 4 D 6 HIS B 277 ALA B 282 -1 O VAL B 278 N ALA B 220 SHEET 5 D 6 LEU B 263 HIS B 268 -1 N TYR B 266 O HIS B 279 SHEET 6 D 6 ALA B 295 LEU B 297 -1 O HIS B 296 N LEU B 267 SHEET 1 E 2 LEU A 148 GLU A 153 0 SHEET 2 E 2 MET A 317 ARG A 322 -1 O MET A 317 N GLU A 153 SHEET 1 F 6 PHE A 191 ASN A 193 0 SHEET 2 F 6 PHE A 200 PRO A 204 -1 O LEU A 202 N PHE A 191 SHEET 3 F 6 TYR A 217 CYS A 222 -1 O ILE A 219 N ILE A 203 SHEET 4 F 6 HIS A 277 ALA A 282 -1 O VAL A 278 N ALA A 220 SHEET 5 F 6 LEU A 263 HIS A 268 -1 N TYR A 266 O HIS A 279 SHEET 6 F 6 ALA A 295 LEU A 297 -1 O HIS A 296 N LEU A 267 CISPEP 1 TYR B 133 PRO B 134 0 -5.26 CISPEP 2 TYR A 133 PRO A 134 0 -4.85 CISPEP 3 TYR A 269 LEU A 270 0 -2.07 SITE 1 AC1 5 HIS A 268 SER A 272 HIS A 277 HIS A 279 SITE 2 AC1 5 HOH A 651 SITE 1 AC2 7 HIS B 268 SER B 272 HIS B 277 HIS B 279 SITE 2 AC2 7 ARG B 294 HOH B 637 HOH B 777 CRYST1 101.922 103.863 71.067 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014071 0.00000