HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-OCT-04 1XMX TITLE CRYSTAL STRUCTURE OF PROTEIN VC1899 FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN VC1899; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA, MCSG, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL GENOMICS, KEYWDS 2 PSI, MIDWEST CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,A.JOACHIMIAK,R.WU,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 9 14-FEB-24 1XMX 1 REMARK SEQADV REVDAT 8 31-JAN-18 1XMX 1 REMARK REVDAT 7 26-SEP-12 1XMX 1 JRNL REVDAT 6 13-JUL-11 1XMX 1 VERSN REVDAT 5 24-FEB-09 1XMX 1 VERSN REVDAT 4 19-DEC-06 1XMX 1 TITLE REMARK REVDAT 3 21-JUN-05 1XMX 1 JRNL REVDAT 2 18-JAN-05 1XMX 1 KEYWDS REMARK REVDAT 1 16-NOV-04 1XMX 0 JRNL AUTH C.CHANG,A.JOACHIMIAK,R.WU,S.MOY, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN VC1899 FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 22708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3109 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4195 ; 1.777 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 6.352 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;39.908 ;24.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;17.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2337 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1573 ; 0.268 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2124 ; 0.316 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 485 ; 0.262 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.318 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.273 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 1.700 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3037 ; 2.618 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 2.037 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1158 ; 3.025 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 63 REMARK 3 RESIDUE RANGE : A 64 A 109 REMARK 3 RESIDUE RANGE : A 110 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5090 5.8590 4.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: -0.0701 REMARK 3 T33: -0.0941 T12: -0.0066 REMARK 3 T13: -0.0217 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5807 L22: 1.0339 REMARK 3 L33: 1.2280 L12: -0.0234 REMARK 3 L13: 0.0543 L23: -0.4196 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.0371 S13: -0.0145 REMARK 3 S21: 0.1319 S22: -0.0533 S23: -0.0282 REMARK 3 S31: -0.0560 S32: 0.0567 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 156 REMARK 3 RESIDUE RANGE : A 250 A 299 REMARK 3 RESIDUE RANGE : A 300 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8170 15.7350 -21.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.0217 REMARK 3 T33: -0.1030 T12: 0.0507 REMARK 3 T13: 0.0232 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.0784 L22: 1.1480 REMARK 3 L33: 0.5531 L12: -1.0361 REMARK 3 L13: 0.5797 L23: -0.7489 REMARK 3 S TENSOR REMARK 3 S11: 0.1288 S12: 0.2067 S13: 0.0860 REMARK 3 S21: -0.0643 S22: -0.2382 S23: -0.0436 REMARK 3 S31: 0.0096 S32: 0.2697 S33: 0.1094 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 200 REMARK 3 RESIDUE RANGE : A 201 A 240 REMARK 3 RESIDUE RANGE : A 241 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9260 27.0390 -45.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: -0.0262 REMARK 3 T33: -0.1436 T12: 0.0179 REMARK 3 T13: 0.0246 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.2173 L22: 1.0523 REMARK 3 L33: 1.7033 L12: -0.3708 REMARK 3 L13: -0.6802 L23: -0.2280 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: -0.0416 S13: -0.0139 REMARK 3 S21: -0.0559 S22: 0.0484 S23: -0.0406 REMARK 3 S31: 0.1196 S32: 0.0455 S33: 0.0391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.358 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, MAGNESIUM, FORMATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K, TEMPERATURE 23K, REMARK 280 TEMPERATURE 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.27450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.71950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.27450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.71950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.54900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 157 REMARK 465 HIS A 158 REMARK 465 GLN A 159 REMARK 465 LEU A 160 REMARK 465 ASP A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 315 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 338 O HOH A 761 1.64 REMARK 500 CG MET A 338 O HOH A 761 1.69 REMARK 500 CE MET A 338 O HOH A 761 1.77 REMARK 500 OD1 ASP A 165 O HOH A 782 1.90 REMARK 500 SG CYS A 122 O HOH A 722 2.03 REMARK 500 O HOH A 468 O HOH A 776 2.13 REMARK 500 N ASN A -1 O HOH A 762 2.18 REMARK 500 O ASN A 131 O HOH A 759 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 313 NH2 ARG A 313 2655 1.87 REMARK 500 O HOH A 497 O HOH A 770 2665 1.92 REMARK 500 O HOH A 497 O HOH A 497 2665 2.08 REMARK 500 OD1 ASP A 208 OE2 GLU A 285 3654 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 126 CA - CB - CG ANGL. DEV. = -19.4 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26666 RELATED DB: TARGETDB DBREF 1XMX A 1 383 UNP Q9KQU9 Q9KQU9_VIBCH 1 383 SEQADV 1XMX ASN A -1 UNP Q9KQU9 CLONING ARTIFACT SEQADV 1XMX ALA A 0 UNP Q9KQU9 CLONING ARTIFACT SEQRES 1 A 385 ASN ALA MET ALA ILE HIS VAL GLY ILE ILE ASP GLN ASP SEQRES 2 A 385 PRO VAL ARG LEU VAL THR PRO LEU LEU ASP HIS ARG THR SEQRES 3 A 385 VAL SER ARG HIS ILE ILE PHE ILE GLY ASP HIS THR GLN SEQRES 4 A 385 THR VAL ILE TYR GLN ARG LEU SER ASP VAL LEU ASN LYS SEQRES 5 A 385 ARG ASN ILE SER THR ASP PHE PHE GLU ILE PRO ALA GLY SEQRES 6 A 385 SER ASN THR SER ALA ILE LYS SER ALA ILE ARG GLU LEU SEQRES 7 A 385 ALA GLU THR LEU LYS ALA ARG GLY GLU GLU VAL LYS PHE SEQRES 8 A 385 ASN ALA SER CYS GLY LEU ARG HIS ARG LEU LEU SER ALA SEQRES 9 A 385 TYR GLU VAL PHE ARG SER TYR HIS TRP PRO ILE PHE VAL SEQRES 10 A 385 VAL GLU PRO ASN SER ASP CYS LEU CYS TRP LEU TYR PRO SEQRES 11 A 385 GLU GLY ASN ASN ASP THR GLN VAL GLN ASP ARG ILE THR SEQRES 12 A 385 ILE ALA ASP TYR LEU THR ILE PHE GLY ALA ARG GLY GLU SEQRES 13 A 385 PHE ASN GLU HIS GLN LEU SER PRO GLN LEU ASP GLN GLN SEQRES 14 A 385 LEU TYR GLN LEU GLY GLU ARG TRP ALA SER ASN ALA LEU SEQRES 15 A 385 GLU LEU GLY PRO GLY LEU ALA THR LEU ASN TYR LEU ALA SEQRES 16 A 385 THR THR CYS ARG LYS GLU GLN LYS LEU ASP VAL GLU LEU SEQRES 17 A 385 SER ASP LYS GLN GLN GLY TYR ARG GLU LEU ASN LEU LEU SEQRES 18 A 385 LEU SER ASP LEU VAL GLU ALA LYS ILE ALA SER TYR GLU SEQRES 19 A 385 ASN GLY ILE LEU THR PHE ILE ASN GLU GLU ALA ARG ARG SEQRES 20 A 385 PHE ALA ASN GLY GLU TRP LEU GLU THR LEU VAL HIS SER SEQRES 21 A 385 THR VAL LYS GLN ILE GLN ASP ASP MET PRO THR ILE GLN SEQRES 22 A 385 ASP ARG SER LEU ASN VAL GLN VAL TYR ARG GLN LEU GLY SEQRES 23 A 385 GLU ARG GLU VAL ARG ASN GLU LEU ASP VAL ALA THR VAL SEQRES 24 A 385 VAL ASN ASN LYS LEU HIS ILE ILE GLU CYS LYS THR LYS SEQRES 25 A 385 GLY MET ARG ASP ASP GLY ASP ASP THR LEU TYR LYS LEU SEQRES 26 A 385 GLU SER LEU ARG ASP LEU LEU GLY GLY LEU GLN ALA ARG SEQRES 27 A 385 ALA MET LEU VAL SER PHE ARG PRO LEU ARG HIS ASN ASP SEQRES 28 A 385 ILE THR ARG ALA GLU ASP LEU GLY LEU ALA LEU ILE GLY SEQRES 29 A 385 PRO ASP GLU LEU LYS ASP LEU LYS THR HIS LEU THR GLN SEQRES 30 A 385 TRP PHE LYS ALA ALA GLY GLY ASN HET MG A 409 1 HET GOL A 401 6 HET GOL A 402 6 HET FMT A 403 3 HET FMT A 404 3 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET FMT A 408 3 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 FMT 6(C H2 O2) FORMUL 11 HOH *396(H2 O) HELIX 1 1 PRO A 12 ASP A 21 1 10 HELIX 2 2 ASP A 34 THR A 36 5 3 HELIX 3 3 GLN A 37 ARG A 51 1 15 HELIX 4 4 ASN A 65 GLY A 84 1 20 HELIX 5 5 LEU A 95 TYR A 109 1 15 HELIX 6 6 THR A 141 PHE A 149 1 9 HELIX 7 7 SER A 161 ASN A 178 1 18 HELIX 8 8 ASN A 178 GLN A 200 1 23 HELIX 9 9 SER A 207 GLY A 212 1 6 HELIX 10 10 TYR A 213 ALA A 226 1 14 HELIX 11 11 ASN A 240 GLY A 249 1 10 HELIX 12 12 GLU A 250 ASP A 265 1 16 HELIX 13 13 ASP A 318 GLY A 332 1 15 HELIX 14 14 LEU A 333 ALA A 335 5 3 HELIX 15 15 ARG A 346 GLY A 357 1 12 HELIX 16 16 GLY A 362 LYS A 367 5 6 HELIX 17 17 ASP A 368 ALA A 379 1 12 SHEET 1 A 7 SER A 54 GLU A 59 0 SHEET 2 A 7 HIS A 28 GLY A 33 1 N PHE A 31 O ASP A 56 SHEET 3 A 7 ALA A 2 ILE A 7 1 N GLY A 6 O ILE A 32 SHEET 4 A 7 GLU A 86 ASN A 90 1 O ASN A 90 N VAL A 5 SHEET 5 A 7 ILE A 113 VAL A 116 1 O PHE A 114 N PHE A 89 SHEET 6 A 7 CYS A 122 TYR A 127 -1 O CYS A 124 N VAL A 115 SHEET 7 A 7 THR A 134 GLN A 135 -1 O THR A 134 N LEU A 123 SHEET 1 B 6 ARG A 152 GLU A 154 0 SHEET 2 B 6 ILE A 270 LEU A 283 -1 O TYR A 280 N ARG A 152 SHEET 3 B 6 ARG A 286 VAL A 298 -1 O ASP A 293 N ASN A 276 SHEET 4 B 6 LYS A 301 LYS A 308 -1 O HIS A 303 N THR A 296 SHEET 5 B 6 ARG A 336 SER A 341 1 O VAL A 340 N GLU A 306 SHEET 6 B 6 ALA A 359 ILE A 361 1 O ILE A 361 N SER A 341 SHEET 1 C 3 ASP A 203 GLU A 205 0 SHEET 2 C 3 ILE A 235 PHE A 238 -1 O LEU A 236 N VAL A 204 SHEET 3 C 3 ALA A 229 GLU A 232 -1 N SER A 230 O THR A 237 LINK MG MG A 409 O HOH A 428 1555 2655 3.06 CISPEP 1 TYR A 127 PRO A 128 0 -7.97 SITE 1 AC1 3 ARG A 14 ARG A 96 HOH A 428 SITE 1 AC2 8 HIS A 4 THR A 24 VAL A 25 SER A 26 SITE 2 AC2 8 LYS A 88 GOL A 402 HOH A 542 HOH A 689 SITE 1 AC3 6 GOL A 401 HOH A 484 HOH A 572 HOH A 686 SITE 2 AC3 6 HOH A 709 HOH A 779 SITE 1 AC4 6 ASN A 131 ASN A 132 ASP A 133 HOH A 537 SITE 2 AC4 6 HOH A 552 HOH A 759 SITE 1 AC5 8 ARG A 51 ASN A 52 PRO A 61 ASN A 65 SITE 2 AC5 8 ALA A 68 HOH A 453 HOH A 477 HOH A 673 SITE 1 AC6 3 LYS A 70 ARG A 74 HOH A 548 SITE 1 AC7 6 ASP A 165 LEU A 168 TYR A 169 THR A 254 SITE 2 AC7 6 SER A 258 HOH A 467 SITE 1 AC8 4 TYR A 213 GLU A 215 LEU A 216 HOH A 726 SITE 1 AC9 4 TYR A 321 ARG A 352 ASP A 355 HOH A 635 CRYST1 66.549 71.439 90.096 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011099 0.00000