HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-OCT-04 1XN8 TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS PROTEIN YQBG: THE NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR215 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YQBG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YQBG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA, GFT NMR, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 PSI, NESG, SR215, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,L.MA,Y.SHEN,T.ACTON,H.S.ATREYA,R.XIAO,A.JOACHIMIAK, AUTHOR 2 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 02-MAR-22 1XN8 1 REMARK REVDAT 3 24-FEB-09 1XN8 1 VERSN REVDAT 2 25-JAN-05 1XN8 1 AUTHOR KEYWDS REVDAT 1 14-DEC-04 1XN8 0 JRNL AUTH G.LIU,Y.SHEN,H.S.ATREYA,D.PARISH,Y.SHAO,D.K.SUKUMARAN, JRNL AUTH 2 R.XIAO,A.YEE,A.LEMAK,A.BHATTACHARYA,T.A.ACTON, JRNL AUTH 3 C.H.ARROWSMITH,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NMR DATA COLLECTION AND ANALYSIS PROTOCOL FOR JRNL TITL 2 HIGH-THROUGHPUT PROTEIN STRUCTURE DETERMINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 10487 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16027363 JRNL DOI 10.1073/PNAS.0504338102 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, DYANA 1.5 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), GUENTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XN8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030542. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.94 MM, NMR BUFFER 6.5, 5% D2O, REMARK 210 0.02% NAN3, 10MM DTT, 5MM CACL2, REMARK 210 100MM NACL, 20MM MES, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : GFT (4,3)D HNNCABCB; GFT (4,3)D REMARK 210 CABCB(CO)NHN; GFT (4,3)D REMARK 210 HABCAB(CO)NHN; SIMULTANEOUS REMARK 210 HETERONUCLEAR RESOLVED [1H,1H]- REMARK 210 NOESY; GFT (4,3)D HCCH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.1.3, DYANA 1.5, REMARK 210 AUTOASSIGN 1.13.2, AUTOSTRUCTURE REMARK 210 2.0.0, CYANA 1.0.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 34 H ILE A 38 1.51 REMARK 500 O VAL A 57 H LEU A 61 1.53 REMARK 500 O LYS A 125 H ARG A 129 1.55 REMARK 500 O LEU A 61 H SER A 65 1.55 REMARK 500 OD1 ASP A 36 HZ3 LYS A 101 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 14 35.47 -94.77 REMARK 500 1 ARG A 21 128.87 -39.62 REMARK 500 1 PHE A 45 88.71 -61.86 REMARK 500 1 TYR A 50 67.29 -163.75 REMARK 500 1 GLU A 75 -85.99 -39.26 REMARK 500 1 SER A 76 61.67 -152.04 REMARK 500 1 ILE A 86 -148.51 -131.87 REMARK 500 1 ASP A 88 -156.74 -95.97 REMARK 500 1 SER A 90 -146.77 -82.74 REMARK 500 1 LEU A 99 109.36 -48.05 REMARK 500 1 LYS A 101 155.15 -45.64 REMARK 500 1 PRO A 102 -167.97 -75.03 REMARK 500 1 LYS A 113 101.65 -41.57 REMARK 500 1 ALA A 115 70.25 -108.63 REMARK 500 1 PRO A 117 -162.07 -74.96 REMARK 500 1 ASP A 118 34.02 -92.61 REMARK 500 1 GLU A 120 160.49 -42.77 REMARK 500 1 ARG A 127 -35.28 -39.88 REMARK 500 2 LEU A 2 -81.63 -129.72 REMARK 500 2 LEU A 3 -34.16 171.30 REMARK 500 2 ILE A 4 179.20 -56.70 REMARK 500 2 HIS A 43 136.95 -171.63 REMARK 500 2 TYR A 50 66.63 -161.08 REMARK 500 2 TYR A 81 165.69 54.84 REMARK 500 2 THR A 83 -160.78 -172.56 REMARK 500 2 SER A 90 103.44 -179.99 REMARK 500 2 LYS A 113 99.62 -39.16 REMARK 500 2 ALA A 115 67.49 -111.58 REMARK 500 2 PRO A 117 -161.78 -74.99 REMARK 500 2 ASP A 118 32.79 -92.17 REMARK 500 2 ILE A 122 159.05 56.29 REMARK 500 2 SER A 130 55.13 -118.01 REMARK 500 3 ILE A 4 109.82 -45.88 REMARK 500 3 VAL A 14 32.62 -92.84 REMARK 500 3 HIS A 43 147.30 -170.49 REMARK 500 3 TYR A 50 64.62 -178.78 REMARK 500 3 ILE A 71 30.87 -92.53 REMARK 500 3 SER A 76 -44.11 -167.04 REMARK 500 3 LYS A 79 141.13 76.55 REMARK 500 3 TYR A 81 -162.06 53.43 REMARK 500 3 LYS A 85 124.51 -39.03 REMARK 500 3 ASP A 88 153.18 -42.12 REMARK 500 3 SER A 90 48.65 -151.78 REMARK 500 3 LEU A 99 96.83 -44.35 REMARK 500 3 LYS A 113 99.52 -39.11 REMARK 500 3 PRO A 117 -161.97 -75.06 REMARK 500 3 ASP A 118 35.06 -92.60 REMARK 500 4 HIS A 43 135.01 -171.53 REMARK 500 4 SER A 46 72.59 33.40 REMARK 500 4 ASP A 47 111.85 -178.22 REMARK 500 REMARK 500 THIS ENTRY HAS 367 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR215 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR MAINTAINS THAT THE SEQUENCES IN THE REMARK 999 DATABASE IS INCORRECT. DBREF 1XN8 A 1 131 UNP P45923 YQBG_BACSU 1 131 SEQADV 1XN8 SER A 98 UNP P45923 PRO 98 SEE REMARK 999 SEQRES 1 A 131 MET LEU LEU ILE THR PRO ASP GLU LEU LYS SER TYR SER SEQRES 2 A 131 VAL PHE GLU SER VAL LYS THR ARG PRO ASP GLU LEU LEU SEQRES 3 A 131 LYS GLN ASP ILE LEU GLU ALA THR ALA ASP ILE ILE LEU SEQRES 4 A 131 LYS VAL GLY HIS ASP PHE SER ASP ALA GLU TYR ILE PRO SEQRES 5 A 131 LEU PRO GLU THR VAL ARG LEU ALA LEU LEU LYS LEU SER SEQRES 6 A 131 GLN PHE TYR ALA LEU ILE ASN GLY ASP GLU SER ILE ILE SEQRES 7 A 131 LYS GLY TYR THR THR GLU LYS ILE GLY ASP TYR SER TYR SEQRES 8 A 131 THR LEU GLY ASP GLY SER SER LEU GLN LYS PRO ASP VAL SEQRES 9 A 131 TYR ALA LEU ILE LYS ASP TYR VAL LYS PRO ALA ASP PRO SEQRES 10 A 131 ASP LEU GLU GLY ILE GLU ALA LYS VAL ARG MET ARG SER SEQRES 11 A 131 ILE HELIX 1 1 THR A 5 SER A 13 1 9 HELIX 2 2 PHE A 15 ARG A 21 1 7 HELIX 3 3 PRO A 22 GLY A 42 1 21 HELIX 4 4 ASP A 47 ILE A 51 5 5 HELIX 5 5 PRO A 54 ILE A 71 1 18 HELIX 6 6 VAL A 104 LYS A 109 1 6 HELIX 7 7 ALA A 124 ILE A 131 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1