HEADER LIGASE 05-OCT-04 1XNV TITLE ACYL-COA CARBOXYLASE BETA SUBUNIT FROM S. COELICOLOR (PCCB), APO FORM TITLE 2 #1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPIONYL-COA CARBOXYLASE COMPLEX B SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: B SUBUNIT; COMPND 5 SYNONYM: PCCASE; PROPANOYL- COA:CARBON DIOXIDE LIGASE; PCC; COMPND 6 EC: 6.4.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: APO FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 STRAIN: A3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS POLYKETIDE; POLYKETIDE SYNTHASE; ACYL-COA CARBOXYLASE; KEYWDS 2 CARBOXYLTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DIACOVICH,D.L.MITCHELL,H.PHAM,G.GAGO,M.M.MELGAR,C.KHOSLA,H.GRAMAJO, AUTHOR 2 S.-C.TSAI REVDAT 6 03-APR-24 1XNV 1 REMARK REVDAT 5 14-FEB-24 1XNV 1 REMARK REVDAT 4 13-JUL-11 1XNV 1 VERSN REVDAT 3 24-FEB-09 1XNV 1 VERSN REVDAT 2 23-NOV-04 1XNV 1 COMPND JRNL REVDAT 1 09-NOV-04 1XNV 0 JRNL AUTH L.DIACOVICH,D.L.MITCHELL,H.PHAM,G.GAGO,M.M.MELGAR,C.KHOSLA, JRNL AUTH 2 H.GRAMAJO,S.-C.TSAI JRNL TITL CRYSTAL STRUCTURE OF THE BETA-SUBUNIT OF ACYL-COA JRNL TITL 2 CARBOXYLASE: STRUCTURE-BASED ENGINEERING OF SUBSTRATE JRNL TITL 3 SPECIFICITY JRNL REF BIOCHEMISTRY V. 43 14027 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15518551 JRNL DOI 10.1021/BI049065V REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 135118.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 53953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2728 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7798 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 391 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 706 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.38000 REMARK 3 B22 (A**2) : -12.38000 REMARK 3 B33 (A**2) : 24.75000 REMARK 3 B12 (A**2) : -4.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 40.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : BIOTIN.PAR REMARK 3 PARAMETER FILE 4 : PCA3.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : BIOTIN.TOP REMARK 3 TOPOLOGY FILE 4 : PCA3.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.89 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 3.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF PCCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.24700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.24700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.24700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO MONOMERS ASYMMETRIC UNIT THAT ARE RELATED WITH THE REMARK 300 OTHER FOUR MONOMERS BY THE 3-FOLD AXIS. IN VIVO THIS ENZYME IS A REMARK 300 HEXAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 44690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 97750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -83.47100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -144.57601 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 83.47100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -144.57601 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 PRO B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 466 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 414 O HOH A 792 1.92 REMARK 500 O ARG B 145 O HOH B 719 1.95 REMARK 500 O ALA B 345 O HOH B 814 2.00 REMARK 500 O ALA A 345 O HOH A 839 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 199 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 THR A 200 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU A 467 CB - CA - C ANGL. DEV. = -21.4 DEGREES REMARK 500 GLU A 467 N - CA - C ANGL. DEV. = 35.1 DEGREES REMARK 500 ALA A 468 N - CA - CB ANGL. DEV. = -23.3 DEGREES REMARK 500 GLN B 199 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG B 414 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 GLU B 467 N - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 ALA B 468 N - CA - CB ANGL. DEV. = -29.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 11 -50.46 -171.67 REMARK 500 ASP A 140 82.34 -172.70 REMARK 500 GLN A 199 26.07 47.04 REMARK 500 ALA A 309 35.16 38.68 REMARK 500 ASP A 375 74.64 -159.35 REMARK 500 ARG A 414 -74.27 -146.39 REMARK 500 ALA A 416 85.64 -161.98 REMARK 500 ALA A 462 74.48 51.61 REMARK 500 ILE B 11 -15.13 -176.58 REMARK 500 ASP B 140 78.98 -166.38 REMARK 500 GLN B 199 29.24 49.43 REMARK 500 PHE B 204 145.80 -170.55 REMARK 500 ALA B 309 42.90 38.34 REMARK 500 ALA B 345 29.25 43.06 REMARK 500 ASP B 375 76.38 -161.79 REMARK 500 ARG B 414 -73.57 -151.85 REMARK 500 ALA B 416 82.07 -153.81 REMARK 500 ALA B 462 87.71 56.33 REMARK 500 ALA B 466 -74.53 -62.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 117 0.07 SIDE CHAIN REMARK 500 TYR B 117 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XNW RELATED DB: PDB REMARK 900 RELATED ID: 1XNY RELATED DB: PDB REMARK 900 RELATED ID: 1XO6 RELATED DB: PDB DBREF 1XNV A 1 530 UNP Q9X4K7 Q9X4K7_STRCO 1 530 DBREF 1XNV B 1 530 UNP Q9X4K7 Q9X4K7_STRCO 1 530 SEQRES 1 A 530 MET SER GLU PRO GLU GLU GLN GLN PRO ASP ILE HIS THR SEQRES 2 A 530 THR ALA GLY LYS LEU ALA ASP LEU ARG ARG ARG ILE GLU SEQRES 3 A 530 GLU ALA THR HIS ALA GLY SER ALA ARG ALA VAL GLU LYS SEQRES 4 A 530 GLN HIS ALA LYS GLY LYS LEU THR ALA ARG GLU ARG ILE SEQRES 5 A 530 ASP LEU LEU LEU ASP GLU GLY SER PHE VAL GLU LEU ASP SEQRES 6 A 530 GLU PHE ALA ARG HIS ARG SER THR ASN PHE GLY LEU ASP SEQRES 7 A 530 ALA ASN ARG PRO TYR GLY ASP GLY VAL VAL THR GLY TYR SEQRES 8 A 530 GLY THR VAL ASP GLY ARG PRO VAL ALA VAL PHE SER GLN SEQRES 9 A 530 ASP PHE THR VAL PHE GLY GLY ALA LEU GLY GLU VAL TYR SEQRES 10 A 530 GLY GLN LYS ILE VAL LYS VAL MET ASP PHE ALA LEU LYS SEQRES 11 A 530 THR GLY CYS PRO VAL VAL GLY ILE ASN ASP SER GLY GLY SEQRES 12 A 530 ALA ARG ILE GLN GLU GLY VAL ALA SER LEU GLY ALA TYR SEQRES 13 A 530 GLY GLU ILE PHE ARG ARG ASN THR HIS ALA SER GLY VAL SEQRES 14 A 530 ILE PRO GLN ILE SER LEU VAL VAL GLY PRO CYS ALA GLY SEQRES 15 A 530 GLY ALA VAL TYR SER PRO ALA ILE THR ASP PHE THR VAL SEQRES 16 A 530 MET VAL ASP GLN THR SER HIS MET PHE ILE THR GLY PRO SEQRES 17 A 530 ASP VAL ILE LYS THR VAL THR GLY GLU ASP VAL GLY PHE SEQRES 18 A 530 GLU GLU LEU GLY GLY ALA ARG THR HIS ASN SER THR SER SEQRES 19 A 530 GLY VAL ALA HIS HIS MET ALA GLY ASP GLU LYS ASP ALA SEQRES 20 A 530 VAL GLU TYR VAL LYS GLN LEU LEU SER TYR LEU PRO SER SEQRES 21 A 530 ASN ASN LEU SER GLU PRO PRO ALA PHE PRO GLU GLU ALA SEQRES 22 A 530 ASP LEU ALA VAL THR ASP GLU ASP ALA GLU LEU ASP THR SEQRES 23 A 530 ILE VAL PRO ASP SER ALA ASN GLN PRO TYR ASP MET HIS SEQRES 24 A 530 SER VAL ILE GLU HIS VAL LEU ASP ASP ALA GLU PHE PHE SEQRES 25 A 530 GLU THR GLN PRO LEU PHE ALA PRO ASN ILE LEU THR GLY SEQRES 26 A 530 PHE GLY ARG VAL GLU GLY ARG PRO VAL GLY ILE VAL ALA SEQRES 27 A 530 ASN GLN PRO MET GLN PHE ALA GLY CYS LEU ASP ILE THR SEQRES 28 A 530 ALA SER GLU LYS ALA ALA ARG PHE VAL ARG THR CYS ASP SEQRES 29 A 530 ALA PHE ASN VAL PRO VAL LEU THR PHE VAL ASP VAL PRO SEQRES 30 A 530 GLY PHE LEU PRO GLY VAL ASP GLN GLU HIS ASP GLY ILE SEQRES 31 A 530 ILE ARG ARG GLY ALA LYS LEU ILE PHE ALA TYR ALA GLU SEQRES 32 A 530 ALA THR VAL PRO LEU ILE THR VAL ILE THR ARG LYS ALA SEQRES 33 A 530 PHE GLY GLY ALA TYR ASP VAL MET GLY SER LYS HIS LEU SEQRES 34 A 530 GLY ALA ASP LEU ASN LEU ALA TRP PRO THR ALA GLN ILE SEQRES 35 A 530 ALA VAL MET GLY ALA GLN GLY ALA VAL ASN ILE LEU HIS SEQRES 36 A 530 ARG ARG THR ILE ALA ASP ALA GLY ASP ASP ALA GLU ALA SEQRES 37 A 530 THR ARG ALA ARG LEU ILE GLN GLU TYR GLU ASP ALA LEU SEQRES 38 A 530 LEU ASN PRO TYR THR ALA ALA GLU ARG GLY TYR VAL ASP SEQRES 39 A 530 ALA VAL ILE MET PRO SER ASP THR ARG ARG HIS ILE VAL SEQRES 40 A 530 ARG GLY LEU ARG GLN LEU ARG THR LYS ARG GLU SER LEU SEQRES 41 A 530 PRO PRO LYS LYS HIS GLY ASN ILE PRO LEU SEQRES 1 B 530 MET SER GLU PRO GLU GLU GLN GLN PRO ASP ILE HIS THR SEQRES 2 B 530 THR ALA GLY LYS LEU ALA ASP LEU ARG ARG ARG ILE GLU SEQRES 3 B 530 GLU ALA THR HIS ALA GLY SER ALA ARG ALA VAL GLU LYS SEQRES 4 B 530 GLN HIS ALA LYS GLY LYS LEU THR ALA ARG GLU ARG ILE SEQRES 5 B 530 ASP LEU LEU LEU ASP GLU GLY SER PHE VAL GLU LEU ASP SEQRES 6 B 530 GLU PHE ALA ARG HIS ARG SER THR ASN PHE GLY LEU ASP SEQRES 7 B 530 ALA ASN ARG PRO TYR GLY ASP GLY VAL VAL THR GLY TYR SEQRES 8 B 530 GLY THR VAL ASP GLY ARG PRO VAL ALA VAL PHE SER GLN SEQRES 9 B 530 ASP PHE THR VAL PHE GLY GLY ALA LEU GLY GLU VAL TYR SEQRES 10 B 530 GLY GLN LYS ILE VAL LYS VAL MET ASP PHE ALA LEU LYS SEQRES 11 B 530 THR GLY CYS PRO VAL VAL GLY ILE ASN ASP SER GLY GLY SEQRES 12 B 530 ALA ARG ILE GLN GLU GLY VAL ALA SER LEU GLY ALA TYR SEQRES 13 B 530 GLY GLU ILE PHE ARG ARG ASN THR HIS ALA SER GLY VAL SEQRES 14 B 530 ILE PRO GLN ILE SER LEU VAL VAL GLY PRO CYS ALA GLY SEQRES 15 B 530 GLY ALA VAL TYR SER PRO ALA ILE THR ASP PHE THR VAL SEQRES 16 B 530 MET VAL ASP GLN THR SER HIS MET PHE ILE THR GLY PRO SEQRES 17 B 530 ASP VAL ILE LYS THR VAL THR GLY GLU ASP VAL GLY PHE SEQRES 18 B 530 GLU GLU LEU GLY GLY ALA ARG THR HIS ASN SER THR SER SEQRES 19 B 530 GLY VAL ALA HIS HIS MET ALA GLY ASP GLU LYS ASP ALA SEQRES 20 B 530 VAL GLU TYR VAL LYS GLN LEU LEU SER TYR LEU PRO SER SEQRES 21 B 530 ASN ASN LEU SER GLU PRO PRO ALA PHE PRO GLU GLU ALA SEQRES 22 B 530 ASP LEU ALA VAL THR ASP GLU ASP ALA GLU LEU ASP THR SEQRES 23 B 530 ILE VAL PRO ASP SER ALA ASN GLN PRO TYR ASP MET HIS SEQRES 24 B 530 SER VAL ILE GLU HIS VAL LEU ASP ASP ALA GLU PHE PHE SEQRES 25 B 530 GLU THR GLN PRO LEU PHE ALA PRO ASN ILE LEU THR GLY SEQRES 26 B 530 PHE GLY ARG VAL GLU GLY ARG PRO VAL GLY ILE VAL ALA SEQRES 27 B 530 ASN GLN PRO MET GLN PHE ALA GLY CYS LEU ASP ILE THR SEQRES 28 B 530 ALA SER GLU LYS ALA ALA ARG PHE VAL ARG THR CYS ASP SEQRES 29 B 530 ALA PHE ASN VAL PRO VAL LEU THR PHE VAL ASP VAL PRO SEQRES 30 B 530 GLY PHE LEU PRO GLY VAL ASP GLN GLU HIS ASP GLY ILE SEQRES 31 B 530 ILE ARG ARG GLY ALA LYS LEU ILE PHE ALA TYR ALA GLU SEQRES 32 B 530 ALA THR VAL PRO LEU ILE THR VAL ILE THR ARG LYS ALA SEQRES 33 B 530 PHE GLY GLY ALA TYR ASP VAL MET GLY SER LYS HIS LEU SEQRES 34 B 530 GLY ALA ASP LEU ASN LEU ALA TRP PRO THR ALA GLN ILE SEQRES 35 B 530 ALA VAL MET GLY ALA GLN GLY ALA VAL ASN ILE LEU HIS SEQRES 36 B 530 ARG ARG THR ILE ALA ASP ALA GLY ASP ASP ALA GLU ALA SEQRES 37 B 530 THR ARG ALA ARG LEU ILE GLN GLU TYR GLU ASP ALA LEU SEQRES 38 B 530 LEU ASN PRO TYR THR ALA ALA GLU ARG GLY TYR VAL ASP SEQRES 39 B 530 ALA VAL ILE MET PRO SER ASP THR ARG ARG HIS ILE VAL SEQRES 40 B 530 ARG GLY LEU ARG GLN LEU ARG THR LYS ARG GLU SER LEU SEQRES 41 B 530 PRO PRO LYS LYS HIS GLY ASN ILE PRO LEU FORMUL 3 HOH *706(H2 O) HELIX 1 1 THR A 13 HIS A 30 1 18 HELIX 2 2 SER A 33 LYS A 43 1 11 HELIX 3 3 THR A 47 LEU A 56 1 10 HELIX 4 4 THR A 73 ASN A 80 5 8 HELIX 5 5 VAL A 108 ALA A 112 5 5 HELIX 6 6 GLY A 114 GLY A 132 1 19 HELIX 7 7 ARG A 145 GLU A 148 5 4 HELIX 8 8 GLY A 149 SER A 167 1 19 HELIX 9 9 VAL A 185 THR A 191 1 7 HELIX 10 10 GLY A 207 GLY A 216 1 10 HELIX 11 11 GLY A 220 GLY A 226 1 7 HELIX 12 12 GLY A 226 THR A 233 1 8 HELIX 13 13 ASP A 243 LEU A 258 1 16 HELIX 14 14 THR A 278 LEU A 284 1 7 HELIX 15 15 ASP A 285 ILE A 287 5 3 HELIX 16 16 ASP A 297 LEU A 306 1 10 HELIX 17 17 ASP A 307 GLU A 310 5 4 HELIX 18 18 GLN A 343 CYS A 347 5 5 HELIX 19 19 ASP A 349 PHE A 366 1 18 HELIX 20 20 GLY A 382 ASP A 388 1 7 HELIX 21 21 GLY A 389 ALA A 404 1 16 HELIX 22 22 GLY A 418 MET A 424 1 7 HELIX 23 23 SER A 426 GLY A 430 5 5 HELIX 24 24 GLY A 446 HIS A 455 1 10 HELIX 25 25 HIS A 455 ASP A 461 1 7 HELIX 26 26 ASP A 465 LEU A 482 1 18 HELIX 27 27 PRO A 484 ARG A 490 1 7 HELIX 28 28 MET A 498 SER A 500 5 3 HELIX 29 29 ASP A 501 ARG A 514 1 14 HELIX 30 30 THR B 13 THR B 29 1 17 HELIX 31 31 SER B 33 LYS B 43 1 11 HELIX 32 32 THR B 47 LEU B 56 1 10 HELIX 33 33 THR B 73 ASN B 80 5 8 HELIX 34 34 VAL B 108 ALA B 112 5 5 HELIX 35 35 GLY B 114 GLY B 132 1 19 HELIX 36 36 ARG B 145 GLU B 148 5 4 HELIX 37 37 GLY B 149 SER B 167 1 19 HELIX 38 38 VAL B 185 THR B 191 1 7 HELIX 39 39 GLY B 207 GLY B 216 1 10 HELIX 40 40 GLY B 220 GLY B 226 1 7 HELIX 41 41 GLY B 226 THR B 233 1 8 HELIX 42 42 ASP B 243 LEU B 258 1 16 HELIX 43 43 THR B 278 LEU B 284 1 7 HELIX 44 44 ASP B 285 ILE B 287 5 3 HELIX 45 45 ASP B 297 HIS B 304 1 8 HELIX 46 46 LEU B 306 GLU B 310 5 5 HELIX 47 47 GLN B 343 CYS B 347 5 5 HELIX 48 48 ASP B 349 PHE B 366 1 18 HELIX 49 49 GLY B 382 ASP B 388 1 7 HELIX 50 50 GLY B 389 ALA B 404 1 16 HELIX 51 51 GLY B 418 MET B 424 1 7 HELIX 52 52 SER B 426 GLY B 430 5 5 HELIX 53 53 GLY B 446 HIS B 455 1 10 HELIX 54 54 HIS B 455 ASP B 461 1 7 HELIX 55 55 ALA B 466 LEU B 482 1 17 HELIX 56 56 PRO B 484 ARG B 490 1 7 HELIX 57 57 MET B 498 SER B 500 5 3 HELIX 58 58 ASP B 501 ARG B 514 1 14 SHEET 1 A 7 VAL A 62 LEU A 64 0 SHEET 2 A 7 VAL A 87 VAL A 94 -1 O THR A 89 N LEU A 64 SHEET 3 A 7 ARG A 97 GLN A 104 -1 O SER A 103 N VAL A 88 SHEET 4 A 7 VAL A 135 ASN A 139 1 O ILE A 138 N PHE A 102 SHEET 5 A 7 GLN A 172 VAL A 176 1 O LEU A 175 N GLY A 137 SHEET 6 A 7 PHE A 193 VAL A 197 1 O PHE A 193 N SER A 174 SHEET 7 A 7 HIS A 239 ALA A 241 1 O HIS A 239 N MET A 196 SHEET 1 B 2 PRO A 179 ALA A 181 0 SHEET 2 B 2 HIS A 202 PHE A 204 1 O PHE A 204 N CYS A 180 SHEET 1 C 6 PHE A 312 THR A 314 0 SHEET 2 C 6 ILE A 322 VAL A 329 -1 O PHE A 326 N PHE A 312 SHEET 3 C 6 ARG A 332 ASN A 339 -1 O ALA A 338 N LEU A 323 SHEET 4 C 6 VAL A 370 VAL A 376 1 O LEU A 371 N GLY A 335 SHEET 5 C 6 LEU A 408 PHE A 417 1 O VAL A 411 N VAL A 374 SHEET 6 C 6 GLN A 441 ALA A 443 1 O GLN A 441 N ARG A 414 SHEET 1 D 7 PHE A 312 THR A 314 0 SHEET 2 D 7 ILE A 322 VAL A 329 -1 O PHE A 326 N PHE A 312 SHEET 3 D 7 ARG A 332 ASN A 339 -1 O ALA A 338 N LEU A 323 SHEET 4 D 7 VAL A 370 VAL A 376 1 O LEU A 371 N GLY A 335 SHEET 5 D 7 LEU A 408 PHE A 417 1 O VAL A 411 N VAL A 374 SHEET 6 D 7 LEU A 433 ALA A 436 1 O LEU A 435 N THR A 410 SHEET 7 D 7 ALA A 495 VAL A 496 1 O ALA A 495 N ALA A 436 SHEET 1 E 7 VAL B 62 LEU B 64 0 SHEET 2 E 7 VAL B 87 VAL B 94 -1 O TYR B 91 N VAL B 62 SHEET 3 E 7 ARG B 97 GLN B 104 -1 O SER B 103 N VAL B 88 SHEET 4 E 7 VAL B 135 ASN B 139 1 O ILE B 138 N PHE B 102 SHEET 5 E 7 GLN B 172 VAL B 176 1 O LEU B 175 N GLY B 137 SHEET 6 E 7 PHE B 193 VAL B 197 1 O PHE B 193 N SER B 174 SHEET 7 E 7 HIS B 239 ALA B 241 1 O ALA B 241 N MET B 196 SHEET 1 F 2 PRO B 179 ALA B 181 0 SHEET 2 F 2 HIS B 202 PHE B 204 1 O PHE B 204 N CYS B 180 SHEET 1 G 6 PHE B 312 THR B 314 0 SHEET 2 G 6 ILE B 322 VAL B 329 -1 O PHE B 326 N PHE B 312 SHEET 3 G 6 ARG B 332 ASN B 339 -1 O ALA B 338 N LEU B 323 SHEET 4 G 6 VAL B 370 VAL B 376 1 O LEU B 371 N GLY B 335 SHEET 5 G 6 LEU B 408 PHE B 417 1 O VAL B 411 N THR B 372 SHEET 6 G 6 GLN B 441 ALA B 443 1 O GLN B 441 N ARG B 414 SHEET 1 H 7 PHE B 312 THR B 314 0 SHEET 2 H 7 ILE B 322 VAL B 329 -1 O PHE B 326 N PHE B 312 SHEET 3 H 7 ARG B 332 ASN B 339 -1 O ALA B 338 N LEU B 323 SHEET 4 H 7 VAL B 370 VAL B 376 1 O LEU B 371 N GLY B 335 SHEET 5 H 7 LEU B 408 PHE B 417 1 O VAL B 411 N THR B 372 SHEET 6 H 7 LEU B 433 ALA B 436 1 O LEU B 435 N THR B 410 SHEET 7 H 7 ALA B 495 VAL B 496 1 O ALA B 495 N ALA B 436 CRYST1 166.942 166.942 80.494 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005990 0.003458 0.000000 0.00000 SCALE2 0.000000 0.006917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012423 0.00000