HEADER CALCIUM-BINDING PROTEIN 05-OCT-04 1XO5 TITLE CRYSTAL STRUCTURE OF CIB1, AN EF-HAND, INTEGRIN AND KINASE-BINDING TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM AND INTEGRIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CALMYRIN, DNA-PKCS INTERACTING PROTEIN, KINASE INTERACTING COMPND 5 PROTEIN, KIP, CIB, SNK INTERACTING PROTEIN 2-28, SIP2-28, CIB1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CIB1, PRKDCIP, KIP, CIB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTC (INVITROGEN) KEYWDS CALCIUM AND INTEGRIN BINDING, EF-HAND, KINASE INTERACTING PROTEIN, KEYWDS 2 CALMYRIN, CALCIUM-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.R.GENTRY,A.U.SINGER,L.BETTS,C.YANG,J.D.FERRARA,L.V.PARISE,J.SONDEK REVDAT 6 14-FEB-24 1XO5 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 1XO5 1 REMARK REVDAT 4 24-FEB-09 1XO5 1 VERSN REVDAT 3 15-MAR-05 1XO5 1 JRNL REVDAT 2 08-FEB-05 1XO5 1 JRNL REVDAT 1 07-DEC-04 1XO5 0 JRNL AUTH H.R.GENTRY,A.U.SINGER,L.BETTS,C.YANG,J.D.FERRARA,J.SONDEK, JRNL AUTH 2 L.V.PARISE JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF CIB1 JRNL TITL 2 DELINEATES A NEW FAMILY OF EF-HAND-CONTAINING PROTEINS JRNL REF J.BIOL.CHEM. V. 280 8407 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15574431 JRNL DOI 10.1074/JBC.M411515200 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 26651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2829 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2572 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3821 ; 1.050 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5989 ; 0.785 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 5.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;36.124 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;15.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3125 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 586 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 869 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2912 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1442 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1638 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.256 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.121 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 22 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 111 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1771 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 682 ; 0.104 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2804 ; 0.875 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 1.274 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1017 ; 1.974 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 191 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 RESIDUE RANGE : A 5 A 5 REMARK 3 RESIDUE RANGE : A 3 A 3 REMARK 3 RESIDUE RANGE : A 7 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9629 0.0217 3.4921 REMARK 3 T TENSOR REMARK 3 T11: -0.2296 T22: -0.2162 REMARK 3 T33: -0.1328 T12: -0.0031 REMARK 3 T13: -0.0075 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.2474 L22: 1.4058 REMARK 3 L33: 0.5388 L12: -1.6455 REMARK 3 L13: 0.4192 L23: 0.1177 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: -0.2244 S13: -0.0703 REMARK 3 S21: 0.1676 S22: 0.1690 S23: -0.2624 REMARK 3 S31: 0.0303 S32: 0.1183 S33: -0.0209 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 191 REMARK 3 RESIDUE RANGE : B 2 B 2 REMARK 3 RESIDUE RANGE : B 6 B 6 REMARK 3 RESIDUE RANGE : B 4 B 4 REMARK 3 RESIDUE RANGE : B 8 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4359 32.4625 31.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.0870 REMARK 3 T33: -0.1401 T12: 0.0674 REMARK 3 T13: 0.0363 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0409 L22: 2.0310 REMARK 3 L33: 6.0907 L12: -0.9776 REMARK 3 L13: -1.7904 L23: 2.9566 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.5650 S13: 0.0058 REMARK 3 S21: 0.6875 S22: 0.1898 S23: -0.0273 REMARK 3 S31: -0.0430 S32: 0.0844 S33: -0.1721 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.02300 REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM BIS-TRIS-PROPANE (BTP), 300 MM REMARK 280 CALCIUM ACETATE, 18% PEG 3350, PH 6.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.50450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 137 REMARK 465 GLU A 138 REMARK 465 GLY A 139 REMARK 465 GLU A 140 REMARK 465 ASP A 141 REMARK 465 THR A 142 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 THR B 136 REMARK 465 GLY B 137 REMARK 465 GLU B 138 REMARK 465 GLY B 139 REMARK 465 GLU B 140 REMARK 465 ASP B 141 REMARK 465 THR B 142 REMARK 465 ARG B 143 REMARK 465 LEU B 144 REMARK 465 SER B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 761 1.25 REMARK 500 O HOH A 472 O HOH B 795 1.65 REMARK 500 O HOH A 591 O HOH A 728 1.79 REMARK 500 O HOH B 464 O HOH B 716 1.81 REMARK 500 O PRO B 54 O HOH B 620 1.82 REMARK 500 O PHE A 115 O HOH A 821 1.86 REMARK 500 O HOH A 477 O HOH A 604 1.92 REMARK 500 O SER A 180 O HOH A 771 1.94 REMARK 500 O LEU A 152 O HOH A 833 1.98 REMARK 500 O HOH B 729 O HOH B 797 2.04 REMARK 500 O HOH A 658 O HOH A 740 2.07 REMARK 500 O LEU B 131 O HOH B 784 2.09 REMARK 500 O HOH A 406 O HOH A 829 2.17 REMARK 500 O HOH A 477 O HOH A 722 2.18 REMARK 500 O HOH B 583 O HOH B 585 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 851 2555 1.99 REMARK 500 O HOH A 414 O HOH A 728 2545 2.08 REMARK 500 NE2 HIS A 175 O HOH A 760 2645 2.12 REMARK 500 O HOH A 425 O HOH A 829 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 146 -128.03 -89.17 REMARK 500 LEU B 13 93.88 56.50 REMARK 500 ALA B 14 156.67 74.80 REMARK 500 SER B 60 30.17 -89.30 REMARK 500 SER B 147 27.51 -76.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 ASP A 118 OD1 80.3 REMARK 620 3 ASP A 120 OD2 82.7 73.0 REMARK 620 4 THR A 122 O 88.7 153.1 81.4 REMARK 620 5 ASP A 127 OD2 105.9 132.0 154.1 74.6 REMARK 620 6 HOH A 593 O 158.5 102.5 77.9 79.3 88.2 REMARK 620 7 HOH A 617 O 98.8 63.7 135.6 142.8 68.3 101.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 438 O REMARK 620 2 HOH A 592 O 81.1 REMARK 620 3 HOH A 603 O 87.2 143.5 REMARK 620 4 HOH A 626 O 86.7 138.1 74.7 REMARK 620 5 HOH A 633 O 159.6 82.8 113.1 97.1 REMARK 620 6 HOH A 731 O 105.1 72.4 77.6 149.3 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 5 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 163 OD1 75.7 REMARK 620 3 ASP A 165 OD1 81.6 76.6 REMARK 620 4 THR A 167 O 85.6 151.3 79.3 REMARK 620 5 GLU A 172 OE1 112.9 124.8 155.7 82.4 REMARK 620 6 GLU A 172 OE2 89.3 77.6 154.0 124.3 49.5 REMARK 620 7 HOH A 589 O 153.4 105.9 73.2 81.5 88.4 117.2 REMARK 620 8 HOH A 806 O 68.8 136.8 120.2 48.7 54.3 78.0 116.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 7 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 98 O REMARK 620 2 LEU A 191 O 111.9 REMARK 620 3 LEU A 191 OXT 79.7 51.8 REMARK 620 4 HOH A 404 O 89.5 151.3 155.8 REMARK 620 5 HOH A 468 O 86.2 82.4 120.1 80.1 REMARK 620 6 HOH A 590 O 81.0 125.7 82.2 74.8 151.8 REMARK 620 7 HOH A 596 O 153.7 87.2 100.5 79.9 115.1 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 116 OD1 REMARK 620 2 ASP B 118 OD1 92.3 REMARK 620 3 ASP B 120 OD1 62.6 114.6 REMARK 620 4 ASP B 120 OD2 98.1 95.2 41.0 REMARK 620 5 THR B 122 O 82.5 172.6 67.6 90.7 REMARK 620 6 ASN B 124 OD1 161.5 77.3 135.7 98.1 106.3 REMARK 620 7 ASP B 127 OD2 108.5 88.4 154.7 153.0 88.3 56.6 REMARK 620 8 HOH B 847 O 143.3 115.0 83.1 57.4 72.0 54.8 97.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 6 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD1 REMARK 620 2 ASP B 163 OD2 72.8 REMARK 620 3 ASP B 165 OD2 105.3 67.4 REMARK 620 4 ASP B 165 O 69.8 101.0 60.0 REMARK 620 5 THR B 167 O 95.6 167.0 111.3 68.7 REMARK 620 6 GLU B 172 OE1 97.8 112.4 155.2 139.2 74.5 REMARK 620 7 GLU B 172 OE2 83.2 67.4 128.6 152.9 118.2 45.1 REMARK 620 8 HOH B 690 O 164.5 122.6 84.2 106.2 69.2 75.3 100.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 8 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 98 O REMARK 620 2 LEU B 191 O 104.4 REMARK 620 3 LEU B 191 OXT 78.1 44.8 REMARK 620 4 HOH B 513 O 84.9 158.9 155.8 REMARK 620 5 HOH B 672 O 165.0 79.3 95.4 96.6 REMARK 620 6 HOH B 742 O 69.7 108.5 65.6 92.4 95.3 REMARK 620 7 HOH B 788 O 69.4 103.2 125.7 61.8 124.4 132.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 8 DBREF 1XO5 A 9 191 UNP Q99828 KIP1_HUMAN 8 190 DBREF 1XO5 B 9 191 UNP Q99828 KIP1_HUMAN 8 190 SEQADV 1XO5 SER A 44 UNP Q99828 THR 43 CONFLICT SEQADV 1XO5 SER A 44 UNP Q99828 THR 43 CONFLICT SEQRES 1 A 183 SER LYS GLU LEU LEU ALA GLU TYR GLN ASP LEU THR PHE SEQRES 2 A 183 LEU THR LYS GLN GLU ILE LEU LEU ALA HIS ARG ARG PHE SEQRES 3 A 183 CYS GLU LEU LEU PRO GLN GLU GLN ARG SER VAL GLU SER SEQRES 4 A 183 SER LEU ARG ALA GLN VAL PRO PHE GLU GLN ILE LEU SER SEQRES 5 A 183 LEU PRO GLU LEU LYS ALA ASN PRO PHE LYS GLU ARG ILE SEQRES 6 A 183 CYS ARG VAL PHE SER THR SER PRO ALA LYS ASP SER LEU SEQRES 7 A 183 SER PHE GLU ASP PHE LEU ASP LEU LEU SER VAL PHE SER SEQRES 8 A 183 ASP THR ALA THR PRO ASP ILE LYS SER HIS TYR ALA PHE SEQRES 9 A 183 ARG ILE PHE ASP PHE ASP ASP ASP GLY THR LEU ASN ARG SEQRES 10 A 183 GLU ASP LEU SER ARG LEU VAL ASN CYS LEU THR GLY GLU SEQRES 11 A 183 GLY GLU ASP THR ARG LEU SER ALA SER GLU MET LYS GLN SEQRES 12 A 183 LEU ILE ASP ASN ILE LEU GLU GLU SER ASP ILE ASP ARG SEQRES 13 A 183 ASP GLY THR ILE ASN LEU SER GLU PHE GLN HIS VAL ILE SEQRES 14 A 183 SER ARG SER PRO ASP PHE ALA SER SER PHE LYS ILE VAL SEQRES 15 A 183 LEU SEQRES 1 B 183 SER LYS GLU LEU LEU ALA GLU TYR GLN ASP LEU THR PHE SEQRES 2 B 183 LEU THR LYS GLN GLU ILE LEU LEU ALA HIS ARG ARG PHE SEQRES 3 B 183 CYS GLU LEU LEU PRO GLN GLU GLN ARG SER VAL GLU SER SEQRES 4 B 183 SER LEU ARG ALA GLN VAL PRO PHE GLU GLN ILE LEU SER SEQRES 5 B 183 LEU PRO GLU LEU LYS ALA ASN PRO PHE LYS GLU ARG ILE SEQRES 6 B 183 CYS ARG VAL PHE SER THR SER PRO ALA LYS ASP SER LEU SEQRES 7 B 183 SER PHE GLU ASP PHE LEU ASP LEU LEU SER VAL PHE SER SEQRES 8 B 183 ASP THR ALA THR PRO ASP ILE LYS SER HIS TYR ALA PHE SEQRES 9 B 183 ARG ILE PHE ASP PHE ASP ASP ASP GLY THR LEU ASN ARG SEQRES 10 B 183 GLU ASP LEU SER ARG LEU VAL ASN CYS LEU THR GLY GLU SEQRES 11 B 183 GLY GLU ASP THR ARG LEU SER ALA SER GLU MET LYS GLN SEQRES 12 B 183 LEU ILE ASP ASN ILE LEU GLU GLU SER ASP ILE ASP ARG SEQRES 13 B 183 ASP GLY THR ILE ASN LEU SER GLU PHE GLN HIS VAL ILE SEQRES 14 B 183 SER ARG SER PRO ASP PHE ALA SER SER PHE LYS ILE VAL SEQRES 15 B 183 LEU HET CA A 1 1 HET CA A 3 1 HET CA A 5 1 HET CA A 7 1 HET CA B 2 1 HET CA B 4 1 HET CA B 6 1 HET CA B 8 1 HETNAM CA CALCIUM ION FORMUL 3 CA 8(CA 2+) FORMUL 11 HOH *397(H2 O) HELIX 1 1 LEU A 13 GLN A 17 5 5 HELIX 2 2 THR A 23 GLU A 36 1 14 HELIX 3 3 LEU A 37 LEU A 38 5 2 HELIX 4 4 PRO A 39 ARG A 43 5 5 HELIX 5 6 PHE A 55 SER A 60 1 6 HELIX 6 7 LEU A 61 ALA A 66 1 6 HELIX 7 8 PHE A 69 SER A 78 1 10 HELIX 8 9 SER A 87 SER A 99 1 13 HELIX 9 10 THR A 103 ASP A 116 1 14 HELIX 10 11 ASN A 124 THR A 136 1 13 HELIX 11 12 GLU A 148 ASP A 161 1 14 HELIX 12 13 ASN A 169 SER A 180 1 12 HELIX 13 14 SER A 180 LEU A 191 1 12 HELIX 14 15 THR B 23 GLU B 36 1 14 HELIX 15 16 LEU B 37 LEU B 38 5 2 HELIX 16 17 PRO B 39 ARG B 43 5 5 HELIX 17 19 PHE B 55 LEU B 59 1 5 HELIX 18 20 PHE B 69 SER B 78 1 10 HELIX 19 21 SER B 87 SER B 99 1 13 HELIX 20 22 THR B 103 ASP B 116 1 14 HELIX 21 23 ASN B 124 CYS B 134 1 11 HELIX 22 24 MET B 149 ASP B 161 1 13 HELIX 23 25 ASN B 169 SER B 180 1 12 HELIX 24 26 SER B 180 SER B 185 1 6 HELIX 25 27 SER B 185 LEU B 191 1 7 SHEET 1 A 2 VAL A 53 PRO A 54 0 SHEET 2 A 2 SER A 85 LEU A 86 -1 O LEU A 86 N VAL A 53 SHEET 1 B 2 VAL B 53 PRO B 54 0 SHEET 2 B 2 SER B 85 LEU B 86 -1 O LEU B 86 N VAL B 53 LINK CA CA A 1 OD1 ASP A 116 1555 1555 2.17 LINK CA CA A 1 OD1 ASP A 118 1555 1555 2.34 LINK CA CA A 1 OD2 ASP A 120 1555 1555 2.34 LINK CA CA A 1 O THR A 122 1555 1555 2.32 LINK CA CA A 1 OD2 ASP A 127 1555 1555 2.51 LINK CA CA A 1 O HOH A 593 1555 1555 2.19 LINK CA CA A 1 O HOH A 617 1555 1555 2.70 LINK CA CA A 3 O HOH A 438 1555 1555 2.39 LINK CA CA A 3 O HOH A 592 1555 1555 2.27 LINK CA CA A 3 O HOH A 603 1555 1555 2.42 LINK CA CA A 3 O HOH A 626 1555 1555 2.41 LINK CA CA A 3 O HOH A 633 1555 1555 2.52 LINK CA CA A 3 O HOH A 731 1555 1555 2.41 LINK CA CA A 5 OD1 ASP A 161 1555 1555 2.27 LINK CA CA A 5 OD1 ASP A 163 1555 1555 2.35 LINK CA CA A 5 OD1 ASP A 165 1555 1555 2.27 LINK CA CA A 5 O THR A 167 1555 1555 2.39 LINK CA CA A 5 OE1 GLU A 172 1555 1555 2.42 LINK CA CA A 5 OE2 GLU A 172 1555 1555 2.77 LINK CA CA A 5 O HOH A 589 1555 1555 2.62 LINK CA CA A 5 O HOH A 806 1555 1555 3.14 LINK CA CA A 7 O PHE A 98 1555 1555 2.38 LINK CA CA A 7 O LEU A 191 1555 1555 2.43 LINK CA CA A 7 OXT LEU A 191 1555 1555 2.45 LINK CA CA A 7 O HOH A 404 1555 1555 2.51 LINK CA CA A 7 O HOH A 468 1555 1555 2.52 LINK CA CA A 7 O HOH A 590 1555 1555 2.46 LINK CA CA A 7 O HOH A 596 1555 1555 2.28 LINK CA CA B 2 OD1 ASP B 116 1555 1555 2.78 LINK CA CA B 2 OD1 ASP B 118 1555 1555 2.83 LINK CA CA B 2 OD1 ASP B 120 1555 1555 2.67 LINK CA CA B 2 OD2 ASP B 120 1555 1555 3.32 LINK CA CA B 2 O THR B 122 1555 1555 2.34 LINK CA CA B 2 OD1 ASN B 124 1555 1555 3.25 LINK CA CA B 2 OD2 ASP B 127 1555 1555 2.40 LINK CA CA B 2 O HOH B 847 1555 1555 2.54 LINK CA CA B 4 O HOH B 702 1555 1555 2.55 LINK CA CA B 6 OD1 ASP B 161 1555 1555 2.34 LINK CA CA B 6 OD2 ASP B 163 1555 1555 2.47 LINK CA CA B 6 OD2 ASP B 165 1555 1555 2.34 LINK CA CA B 6 O ASP B 165 1555 1555 2.85 LINK CA CA B 6 O THR B 167 1555 1555 2.52 LINK CA CA B 6 OE1 GLU B 172 1555 1555 2.69 LINK CA CA B 6 OE2 GLU B 172 1555 1555 2.99 LINK CA CA B 6 O HOH B 690 1555 1555 2.54 LINK CA CA B 8 O PHE B 98 1555 1555 2.42 LINK CA CA B 8 O LEU B 191 1555 1555 2.86 LINK CA CA B 8 OXT LEU B 191 1555 1555 2.66 LINK CA CA B 8 O HOH B 513 1555 1555 2.41 LINK CA CA B 8 O HOH B 672 1555 1555 2.47 LINK CA CA B 8 O HOH B 742 1555 1555 2.59 LINK CA CA B 8 O HOH B 788 1555 1555 3.09 SITE 1 AC1 7 ASP A 116 ASP A 118 ASP A 120 THR A 122 SITE 2 AC1 7 ASP A 127 HOH A 593 HOH A 617 SITE 1 AC2 7 ASP B 116 ASP B 118 ASP B 120 THR B 122 SITE 2 AC2 7 ASN B 124 ASP B 127 HOH B 847 SITE 1 AC3 6 HOH A 438 HOH A 592 HOH A 603 HOH A 626 SITE 2 AC3 6 HOH A 633 HOH A 731 SITE 1 AC4 1 HOH B 702 SITE 1 AC5 6 ASP A 161 ASP A 163 ASP A 165 THR A 167 SITE 2 AC5 6 GLU A 172 HOH A 589 SITE 1 AC6 6 ASP B 161 ASP B 163 ASP B 165 THR B 167 SITE 2 AC6 6 GLU B 172 HOH B 690 SITE 1 AC7 6 PHE A 98 LEU A 191 HOH A 404 HOH A 468 SITE 2 AC7 6 HOH A 590 HOH A 596 SITE 1 AC8 6 PHE B 98 LEU B 191 HOH B 513 HOH B 672 SITE 2 AC8 6 HOH B 742 HOH B 788 CRYST1 56.663 51.009 77.214 90.00 103.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017648 0.000000 0.004113 0.00000 SCALE2 0.000000 0.019604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013298 0.00000