HEADER HYDROLASE/HYDROLASE INHIBITOR 08-OCT-04 1XP5 TITLE STRUCTURE OF THE (SR)CA2+-ATPASE E2-ALF4- FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM PUMP 1, SERCA1, SR CA2+, -ATPASE 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA2+, ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS P-TYPE ATPASE, CA2+-ATPASE, MEMBRANE PROTEIN, ALUMINIUM FLUORIDE, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.OLESEN,T.L.S.SORENSEN,R.C.NIELSEN,J.V.MOLLER,P.NISSEN REVDAT 7 03-APR-24 1XP5 1 REMARK REVDAT 6 13-MAR-24 1XP5 1 COMPND REMARK HETNAM LINK REVDAT 5 13-JUL-11 1XP5 1 VERSN REVDAT 4 26-JAN-11 1XP5 1 HETSYN HEADER REVDAT 3 24-FEB-09 1XP5 1 VERSN REVDAT 2 22-FEB-05 1XP5 3 HETATM REVDAT 1 04-JAN-05 1XP5 0 JRNL AUTH C.OLESEN,T.L.S.SORENSEN,R.C.NIELSEN,J.V.MOLLER,P.NISSEN JRNL TITL DEPHOSPHORYLATION OF THE CALCIUM PUMP COUPLED TO COUNTERION JRNL TITL 2 OCCLUSION JRNL REF SCIENCE V. 306 2251 2004 JRNL REFN ISSN 0036-8075 JRNL PMID 15618517 JRNL DOI 10.1126/SCIENCE.1106289 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 27910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.545 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97564 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27910 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INDIVIDUAL DOMAINS DERIVED FROM THE E2 REMARK 200 -THAPSIGARGIN AND CA2E1-ADP:ALF4- STRUCTURES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, TERT-BUTANOL, GLYCEROL, KCL, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.25500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 183 O HOH A 2006 2.04 REMARK 500 O ASN A 111 N GLU A 113 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 403 OE2 GLU A 647 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 994 C GLY A 994 OXT 0.190 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 111 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 GLU A 113 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP A 373 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 GLU A 878 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 LYS A 960 N - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 118.96 -165.29 REMARK 500 LEU A 60 -26.66 -36.23 REMARK 500 GLU A 83 30.31 -81.99 REMARK 500 ALA A 87 28.47 -144.59 REMARK 500 ARG A 110 55.05 -91.59 REMARK 500 ALA A 112 -46.50 -21.11 REMARK 500 ASP A 133 7.61 -66.31 REMARK 500 VAL A 155 118.05 -26.72 REMARK 500 VAL A 159 121.69 -38.78 REMARK 500 THR A 181 -5.13 -144.48 REMARK 500 PRO A 195 -39.59 -30.34 REMARK 500 ARG A 198 20.39 -75.16 REMARK 500 LYS A 204 54.38 -67.49 REMARK 500 LYS A 205 0.32 -59.76 REMARK 500 ALA A 241 -77.84 -51.28 REMARK 500 THR A 242 127.82 -32.56 REMARK 500 VAL A 263 -71.96 -58.06 REMARK 500 ASN A 275 45.70 -77.94 REMARK 500 ILE A 276 36.38 -81.28 REMARK 500 ASN A 280 28.74 -168.01 REMARK 500 ASP A 281 -57.42 -129.56 REMARK 500 PRO A 282 -152.32 -76.43 REMARK 500 VAL A 283 -153.26 -120.05 REMARK 500 SER A 287 9.63 -155.64 REMARK 500 ILE A 289 -30.61 -150.04 REMARK 500 ARG A 290 -60.28 -99.41 REMARK 500 PHE A 296 -41.60 -143.42 REMARK 500 PRO A 308 47.83 -70.84 REMARK 500 GLU A 309 97.89 -52.16 REMARK 500 LYS A 352 -80.40 -98.01 REMARK 500 THR A 355 -72.20 -109.28 REMARK 500 ASN A 359 49.92 71.56 REMARK 500 ASP A 370 -61.89 -106.44 REMARK 500 ASP A 375 -4.68 74.09 REMARK 500 PRO A 391 31.13 -72.68 REMARK 500 ASP A 399 21.62 47.44 REMARK 500 GLN A 406 2.18 -69.95 REMARK 500 ASP A 426 123.48 -178.38 REMARK 500 THR A 457 134.31 -39.51 REMARK 500 LEU A 462 161.77 -48.89 REMARK 500 ALA A 470 -72.99 -55.05 REMARK 500 GLU A 486 179.11 -48.44 REMARK 500 ARG A 491 -2.44 -142.46 REMARK 500 LYS A 492 47.23 37.54 REMARK 500 ALA A 517 119.86 -39.67 REMARK 500 THR A 554 -28.80 -157.86 REMARK 500 THR A 569 73.39 -119.74 REMARK 500 PRO A 571 172.96 -57.36 REMARK 500 GLU A 574 46.90 -103.76 REMARK 500 GLU A 575 10.30 -143.51 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF A2002 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE2 REMARK 620 2 ALF A2002 F1 101.6 REMARK 620 3 ALF A2002 F2 83.7 174.5 REMARK 620 4 ALF A2002 F3 70.3 94.4 88.5 REMARK 620 5 ALF A2002 F4 106.0 85.4 92.0 176.1 REMARK 620 6 ASP A 351 OD1 165.2 91.5 83.3 102.4 81.5 REMARK 620 7 ASP A 351 OD2 128.6 90.5 86.9 59.0 124.8 43.5 REMARK 620 8 LYS A 684 NZ 144.9 62.2 112.6 137.4 45.6 48.4 84.6 REMARK 620 9 HOH A2005 O 120.1 44.2 133.7 67.4 114.7 65.6 46.9 71.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 244 OE1 REMARK 620 2 LEU A 711 O 149.3 REMARK 620 3 LYS A 712 O 73.1 78.5 REMARK 620 4 ALA A 714 O 77.7 88.0 83.7 REMARK 620 5 GLU A 732 OE1 115.3 94.4 169.7 103.6 REMARK 620 6 GLU A 732 OE2 96.6 111.3 132.7 140.4 43.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 351 OD2 REMARK 620 2 THR A 353 O 75.6 REMARK 620 3 ASP A 703 OD2 74.5 97.2 REMARK 620 4 ALF A2002 F3 71.0 69.0 145.0 REMARK 620 5 ALF A2002 AL 60.0 87.4 131.6 23.6 REMARK 620 6 HOH A2004 O 161.3 89.5 119.3 93.3 108.9 REMARK 620 7 HOH A2005 O 70.4 145.3 80.3 93.2 70.0 122.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TG1 A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5T RELATED DB: PDB REMARK 900 STRUCTURE OF THE (SR)CA2+-ATPASE CA2-E1-ADP: ALF4- FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 994 IS G BECAUSE AS STATED IN SWS: REMARK 999 DPEDERRK -> G IN ISOFORM SERCA1A. DBREF 1XP5 A 1 993 UNP P04191 AT2A1_RABIT 1 993 SEQADV 1XP5 GLY A 994 UNP P04191 SEE REMARK 999 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET MG A2001 1 HET ALF A2002 5 HET K A2003 1 HET TG1 A 999 46 HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM K POTASSIUM ION HETNAM TG1 OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, HETNAM 2 TG1 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3, HETNAM 3 TG1 -3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9- HETNAM 4 TG1 TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4- HETNAM 5 TG1 (1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER HETSYN TG1 THAPSIGARGIN FORMUL 2 MG MG 2+ FORMUL 3 ALF AL F4 1- FORMUL 4 K K 1+ FORMUL 5 TG1 C34 H50 O12 FORMUL 6 HOH *3(H2 O) HELIX 1 1 SER A 8 GLY A 17 1 10 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 LEU A 52 GLU A 58 1 7 HELIX 4 4 ASP A 59 PHE A 78 1 20 HELIX 5 5 PHE A 88 TRP A 107 1 20 HELIX 6 6 ASN A 114 GLU A 121 1 8 HELIX 7 7 ARG A 143 ILE A 145 5 3 HELIX 8 8 SER A 178 THR A 181 5 4 HELIX 9 9 VAL A 200 LYS A 204 5 5 HELIX 10 10 THR A 226 SER A 229 5 4 HELIX 11 11 THR A 230 THR A 242 1 13 HELIX 12 12 THR A 247 ASN A 275 1 29 HELIX 13 13 ILE A 276 PHE A 279 5 4 HELIX 14 14 ILE A 298 ILE A 307 1 10 HELIX 15 15 GLY A 310 LYS A 329 1 20 HELIX 16 16 SER A 335 LEU A 342 1 8 HELIX 17 17 ARG A 403 PHE A 407 5 5 HELIX 18 18 ASP A 408 CYS A 420 1 13 HELIX 19 19 GLU A 439 ASN A 453 1 15 HELIX 20 20 VAL A 465 ALA A 468 5 4 HELIX 21 21 ASN A 469 LEU A 478 1 10 HELIX 22 22 ALA A 517 ARG A 524 1 8 HELIX 23 23 THR A 538 GLY A 553 1 16 HELIX 24 24 LYS A 572 MET A 576 5 5 HELIX 25 25 ASP A 580 SER A 582 5 3 HELIX 26 26 ARG A 583 GLU A 588 1 6 HELIX 27 27 GLU A 606 ALA A 617 1 12 HELIX 28 28 ASN A 628 ARG A 637 1 10 HELIX 29 29 GLY A 655 LEU A 661 1 7 HELIX 30 30 PRO A 662 ALA A 673 1 12 HELIX 31 31 GLU A 680 SER A 693 1 14 HELIX 32 32 ASP A 707 LYS A 712 1 6 HELIX 33 33 THR A 724 SER A 731 1 8 HELIX 34 34 PHE A 740 LEU A 764 1 25 HELIX 35 35 ILE A 765 LEU A 781 1 17 HELIX 36 36 ILE A 788 VAL A 798 1 11 HELIX 37 37 ASP A 800 GLY A 808 1 9 HELIX 38 38 GLY A 831 THR A 848 1 18 HELIX 39 39 ALA A 851 TRP A 855 5 5 HELIX 40 40 CYS A 888 ALA A 893 5 6 HELIX 41 41 PRO A 896 SER A 915 1 20 HELIX 42 42 PRO A 926 VAL A 929 5 4 HELIX 43 43 ASN A 930 PHE A 945 1 16 HELIX 44 44 ASP A 951 LYS A 958 1 8 HELIX 45 45 THR A 965 LEU A 975 1 11 HELIX 46 46 LEU A 975 ASN A 990 1 16 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N VAL A 129 O GLN A 138 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O ILE A 150 N TYR A 130 SHEET 4 A 6 LYS A 218 THR A 225 -1 O ALA A 219 N VAL A 153 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N SER A 167 O LEU A 220 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 SER A 186 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ALA A 216 N ARG A 174 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N GLY A 717 O MET A 733 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 SER A 350 1 N CYS A 349 O ALA A 699 SHEET 6 C 8 ARG A 620 ILE A 624 1 O ARG A 620 N ILE A 348 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 TYR A 653 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 D 9 LYS A 400 PRO A 401 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N THR A 566 O THR A 592 SHEET 7 D 9 LYS A 511 GLY A 516 -1 N GLY A 516 O ALA A 563 SHEET 8 D 9 SER A 493 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 9 D 9 MET A 479 LEU A 485 -1 N PHE A 483 O TYR A 497 SHEET 1 E 7 LYS A 400 PRO A 401 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 E 7 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 7 E 7 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 F 2 SER A 424 ASN A 428 0 SHEET 2 F 2 VAL A 433 VAL A 437 -1 O GLU A 435 N ASP A 426 LINK OE2 GLU A 183 AL ALF A2002 1555 1555 3.52 LINK OE1 GLN A 244 K K A2003 1555 1555 2.86 LINK OD2 ASP A 351 MG MG A2001 1555 1555 2.42 LINK OD1 ASP A 351 AL ALF A2002 1555 1555 2.13 LINK OD2 ASP A 351 AL ALF A2002 1555 1555 3.18 LINK O THR A 353 MG MG A2001 1555 1555 2.42 LINK NZ LYS A 684 AL ALF A2002 1555 1555 3.69 LINK OD2 ASP A 703 MG MG A2001 1555 1555 2.33 LINK O LEU A 711 K K A2003 1555 1555 2.84 LINK O LYS A 712 K K A2003 1555 1555 3.07 LINK O ALA A 714 K K A2003 1555 1555 2.96 LINK OE1 GLU A 732 K K A2003 1555 1555 2.95 LINK OE2 GLU A 732 K K A2003 1555 1555 3.05 LINK MG MG A2001 F3 ALF A2002 1555 1555 2.28 LINK MG MG A2001 AL ALF A2002 1555 1555 3.60 LINK MG MG A2001 O HOH A2004 1555 1555 2.11 LINK MG MG A2001 O HOH A2005 1555 1555 2.24 LINK AL ALF A2002 O HOH A2005 1555 1555 3.53 LINK AL ALF A2002 O HOH A2006 1555 1555 2.07 SITE 1 AC1 6 ASP A 351 THR A 353 ASP A 703 ALF A2002 SITE 2 AC1 6 HOH A2004 HOH A2005 SITE 1 AC2 14 THR A 181 GLY A 182 GLU A 183 ASP A 351 SITE 2 AC2 14 LYS A 352 THR A 353 ILE A 624 THR A 625 SITE 3 AC2 14 GLY A 626 LYS A 684 ASN A 706 MG A2001 SITE 4 AC2 14 HOH A2005 HOH A2006 SITE 1 AC3 5 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC3 5 GLU A 732 SITE 1 AC4 16 LEU A 253 GLU A 255 PHE A 256 GLN A 259 SITE 2 AC4 16 LEU A 260 VAL A 263 ALA A 306 ILE A 761 SITE 3 AC4 16 ILE A 765 ASN A 768 VAL A 769 VAL A 773 SITE 4 AC4 16 LEU A 828 ILE A 829 PHE A 834 TYR A 837 CRYST1 86.510 119.270 142.260 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007029 0.00000