data_1XRW # _entry.id 1XRW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XRW pdb_00001xrw 10.2210/pdb1xrw/pdb RCSB RCSB030695 ? ? WWPDB D_1000030695 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2016-04-20 5 'Structure model' 1 4 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Non-polymer description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_nmr_software 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_nmr_software.name' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XRW _pdbx_database_status.recvd_initial_deposition_date 2004-10-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baruah, H.' 1 'Wright, M.W.' 2 'Bierbach, U.' 3 # _citation.id primary _citation.title 'Solution Structural Study of a DNA Duplex Containing the Guanine-N7 Adduct Formed by a Cytotoxic Platinum-Acridine Hybrid Agent' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 6059 _citation.page_last 6070 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15835895 _citation.pdbx_database_id_DOI 10.1021/bi050021b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baruah, H.' 1 ? primary 'Wright, M.W.' 2 ? primary 'Bierbach, U.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*CP*GP*TP*CP*C)-3'" 2338.543 1 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*AP*CP*GP*AP*GP*G)-3'" 2516.667 1 ? ? ? ? 3 non-polymer syn '1-[2-(ACRIDIN-9-YLAMINO)ETHYL]-1,3-DIMETHYLTHIOUREA-PLATINUM(II)-ETHANE-1,2-DIAMINE' 580.627 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DG)(DT)(DC)(DC)' CCTCGTCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DC)(DG)(DA)(DG)(DG)' GGACGAGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '1-[2-(ACRIDIN-9-YLAMINO)ETHYL]-1,3-DIMETHYLTHIOUREA-PLATINUM(II)-ETHANE-1,2-DIAMINE' _pdbx_entity_nonpoly.comp_id 2PT # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DG n 1 6 DT n 1 7 DC n 1 8 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PT non-polymer . '1-[2-(ACRIDIN-9-YLAMINO)ETHYL]-1,3-DIMETHYLTHIOUREA-PLATINUM(II)-ETHANE-1,2-DIAMINE' ? 'C20 H29 N6 Pt S 3' 580.627 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DC 2 2 2 DC CYT A . n A 1 3 DT 3 3 3 DT THY A . n A 1 4 DC 4 4 4 DC CYT A . n A 1 5 DG 5 5 5 DG GUA A . n A 1 6 DT 6 6 6 DT THY A . n A 1 7 DC 7 7 7 DC CYT A . n A 1 8 DC 8 8 8 DC CYT A . n B 2 1 DG 1 1 1 DG GUA B . n B 2 2 DG 2 2 2 DG GUA B . n B 2 3 DA 3 3 3 DA ADE B . n B 2 4 DC 4 4 4 DC CYT B . n B 2 5 DG 5 5 5 DG GUA B . n B 2 6 DA 6 6 6 DA ADE B . n B 2 7 DG 7 7 7 DG GUA B . n B 2 8 DG 8 8 8 DG GUA B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 2PT _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 20 _pdbx_nonpoly_scheme.auth_seq_num 20 _pdbx_nonpoly_scheme.pdb_mon_id 2PT _pdbx_nonpoly_scheme.auth_mon_id ACR _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.entry_id 1XRW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1XRW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XRW _struct.title 'Solution Structure of a Platinum-Acridine Modified Octamer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1XRW _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'platinum, acridine, dual binding mode, major groove, unwinding, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1XRW 1XRW ? ? ? 2 2 PDB 1XRW 1XRW ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XRW A 1 ? 8 ? 1XRW 1 ? 8 ? 1 8 2 2 1XRW B 1 ? 8 ? 1XRW 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 C 2PT . PT ? ? A DG 5 B 2PT 20 1_555 ? ? ? ? ? ? ? 2.035 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DA 3 N1 ? ? A DG 5 B DA 3 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DA 3 N6 ? ? A DG 5 B DA 3 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 6 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 6 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 5 ? A DG 5 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 S ? C 2PT . ? B 2PT 20 ? 1_555 82.5 ? 2 N7 ? A DG 5 ? A DG 5 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 N5 ? C 2PT . ? B 2PT 20 ? 1_555 93.1 ? 3 S ? C 2PT . ? B 2PT 20 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 N5 ? C 2PT . ? B 2PT 20 ? 1_555 175.7 ? 4 N7 ? A DG 5 ? A DG 5 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 N4 ? C 2PT . ? B 2PT 20 ? 1_555 174.4 ? 5 S ? C 2PT . ? B 2PT 20 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 N4 ? C 2PT . ? B 2PT 20 ? 1_555 100.7 ? 6 N5 ? C 2PT . ? B 2PT 20 ? 1_555 PT ? C 2PT . ? B 2PT 20 ? 1_555 N4 ? C 2PT . ? B 2PT 20 ? 1_555 83.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 2PT 20 ? 5 'BINDING SITE FOR RESIDUE 2PT B 20' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC A 4 ? DC A 4 . ? 1_555 ? 2 AC1 5 DG A 5 ? DG A 5 . ? 1_555 ? 3 AC1 5 DT A 6 ? DT A 6 . ? 1_555 ? 4 AC1 5 DC B 4 ? DC B 4 . ? 1_555 ? 5 AC1 5 DG B 5 ? DG B 5 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DG 5 ? ? C2 A DG 5 ? ? 1.463 1.373 0.090 0.008 N 2 1 C6 A DG 5 ? ? N1 A DG 5 ? ? 1.341 1.391 -0.050 0.007 N 3 1 C5 A DG 5 ? ? N7 A DG 5 ? ? 1.445 1.388 0.057 0.006 N 4 1 N7 A DG 5 ? ? C8 A DG 5 ? ? 1.437 1.305 0.132 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.43 108.30 4.13 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.17 108.30 2.87 0.30 N 3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.27 108.30 1.97 0.30 N 4 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.14 108.30 3.84 0.30 N 5 1 C6 A DG 5 ? ? N1 A DG 5 ? ? C2 A DG 5 ? ? 120.79 125.10 -4.31 0.60 N 6 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 116.49 111.50 4.99 0.50 N 7 1 C4 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 115.38 110.80 4.58 0.40 N 8 1 C5 A DG 5 ? ? N7 A DG 5 ? ? C8 A DG 5 ? ? 98.12 104.30 -6.18 0.50 N 9 1 C8 A DG 5 ? ? N9 A DG 5 ? ? C4 A DG 5 ? ? 108.80 106.40 2.40 0.40 N 10 1 C6 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 125.47 130.40 -4.93 0.60 N 11 1 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DT 6 ? ? 111.25 119.70 -8.45 1.20 Y 12 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.13 108.30 4.83 0.30 N 13 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.43 108.30 2.13 0.30 N 14 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.69 108.30 3.39 0.30 N 15 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.14 108.30 2.84 0.30 N 16 1 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 111.46 108.30 3.16 0.30 N 17 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 110.90 108.30 2.60 0.30 N 18 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.36 108.30 3.06 0.30 N 19 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.49 108.30 2.19 0.30 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.065 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'covalent metal bonds' # _pdbx_nmr_ensemble.entry_id 1XRW _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1XRW _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3.5mM modified duplex, 10 mM phosphate buffer, 10mM NaCl, 100% D2O or 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '100% D2O or 90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM NaH2PO4, 10 mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D NOESY' 4 1 1 '1H-31P COSY' # _pdbx_nmr_refine.entry_id 1XRW _pdbx_nmr_refine.method 'distance geometry, simulated annealing, molecular dynamics, matrix relaxation' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 processing Bruker 1 Felix 2000 processing Accelrys 2 Felix 2000 'data analysis' Accelrys 3 MARDIGRAS 3.2 'iterative matrix relaxation' 'James, T. L.' 4 Discover 2000 refinement Accelrys 5 CORMA 5.2 'data analysis' 'James, T. L.' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PT S S N N 1 2PT N6 N N N 2 2PT N7 N N N 3 2PT N8 N N N 4 2PT N9 N Y N 5 2PT C7 C N N 6 2PT C8 C N N 7 2PT C9 C N N 8 2PT C10 C Y N 9 2PT C11 C Y N 10 2PT C12 C Y N 11 2PT C13 C Y N 12 2PT C14 C Y N 13 2PT C15 C Y N 14 2PT C16 C Y N 15 2PT C17 C Y N 16 2PT C18 C Y N 17 2PT C19 C Y N 18 2PT C20 C Y N 19 2PT C21 C Y N 20 2PT C22 C Y N 21 2PT C23 C N N 22 2PT C24 C N N 23 2PT C5 C N N 24 2PT C6 C N N 25 2PT N5 N N N 26 2PT PT PT N N 27 2PT N4 N N N 28 2PT H7N H N N 29 2PT H8 H N N 30 2PT H9 H N N 31 2PT H81 H N N 32 2PT H82 H N N 33 2PT H91 H N N 34 2PT H92 H N N 35 2PT H12 H N N 36 2PT H13 H N N 37 2PT H14 H N N 38 2PT H15 H N N 39 2PT H18 H N N 40 2PT H19 H N N 41 2PT H20 H N N 42 2PT H21 H N N 43 2PT H231 H N N 44 2PT H232 H N N 45 2PT H233 H N N 46 2PT H241 H N N 47 2PT H242 H N N 48 2PT H243 H N N 49 2PT H51 H N N 50 2PT H52 H N N 51 2PT H61 H N N 52 2PT H62 H N N 53 2PT HN51 H N N 54 2PT H41 H N N 55 2PT HN52 H N N 56 2PT H42 H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PT S C7 doub N N 1 2PT S PT sing N N 2 2PT N6 C7 sing N N 3 2PT N6 C8 sing N N 4 2PT N6 C23 sing N N 5 2PT N7 C7 sing N N 6 2PT N7 C24 sing N N 7 2PT N7 H7N sing N N 8 2PT N8 C9 sing N N 9 2PT N8 C10 sing N N 10 2PT N8 H8 sing N N 11 2PT N9 C16 doub Y N 12 2PT N9 C17 sing Y N 13 2PT N9 H9 sing N N 14 2PT C8 C9 sing N N 15 2PT C8 H81 sing N N 16 2PT C8 H82 sing N N 17 2PT C9 H91 sing N N 18 2PT C9 H92 sing N N 19 2PT C10 C11 doub Y N 20 2PT C10 C22 sing Y N 21 2PT C11 C12 sing Y N 22 2PT C11 C16 sing Y N 23 2PT C12 C13 doub Y N 24 2PT C12 H12 sing N N 25 2PT C13 C14 sing Y N 26 2PT C13 H13 sing N N 27 2PT C14 C15 doub Y N 28 2PT C14 H14 sing N N 29 2PT C15 C16 sing Y N 30 2PT C15 H15 sing N N 31 2PT C17 C18 sing Y N 32 2PT C17 C22 doub Y N 33 2PT C18 C19 doub Y N 34 2PT C18 H18 sing N N 35 2PT C19 C20 sing Y N 36 2PT C19 H19 sing N N 37 2PT C20 C21 doub Y N 38 2PT C20 H20 sing N N 39 2PT C21 C22 sing Y N 40 2PT C21 H21 sing N N 41 2PT C23 H231 sing N N 42 2PT C23 H232 sing N N 43 2PT C23 H233 sing N N 44 2PT C24 H241 sing N N 45 2PT C24 H242 sing N N 46 2PT C24 H243 sing N N 47 2PT C5 C6 sing N N 48 2PT C5 N4 sing N N 49 2PT C5 H51 sing N N 50 2PT C5 H52 sing N N 51 2PT C6 N5 sing N N 52 2PT C6 H61 sing N N 53 2PT C6 H62 sing N N 54 2PT N5 PT sing N N 55 2PT N5 HN51 sing N N 56 2PT N5 HN52 sing N N 57 2PT PT N4 sing N N 58 2PT N4 H41 sing N N 59 2PT N4 H42 sing N N 60 DA OP3 P sing N N 61 DA OP3 HOP3 sing N N 62 DA P OP1 doub N N 63 DA P OP2 sing N N 64 DA P "O5'" sing N N 65 DA OP2 HOP2 sing N N 66 DA "O5'" "C5'" sing N N 67 DA "C5'" "C4'" sing N N 68 DA "C5'" "H5'" sing N N 69 DA "C5'" "H5''" sing N N 70 DA "C4'" "O4'" sing N N 71 DA "C4'" "C3'" sing N N 72 DA "C4'" "H4'" sing N N 73 DA "O4'" "C1'" sing N N 74 DA "C3'" "O3'" sing N N 75 DA "C3'" "C2'" sing N N 76 DA "C3'" "H3'" sing N N 77 DA "O3'" "HO3'" sing N N 78 DA "C2'" "C1'" sing N N 79 DA "C2'" "H2'" sing N N 80 DA "C2'" "H2''" sing N N 81 DA "C1'" N9 sing N N 82 DA "C1'" "H1'" sing N N 83 DA N9 C8 sing Y N 84 DA N9 C4 sing Y N 85 DA C8 N7 doub Y N 86 DA C8 H8 sing N N 87 DA N7 C5 sing Y N 88 DA C5 C6 sing Y N 89 DA C5 C4 doub Y N 90 DA C6 N6 sing N N 91 DA C6 N1 doub Y N 92 DA N6 H61 sing N N 93 DA N6 H62 sing N N 94 DA N1 C2 sing Y N 95 DA C2 N3 doub Y N 96 DA C2 H2 sing N N 97 DA N3 C4 sing Y N 98 DC OP3 P sing N N 99 DC OP3 HOP3 sing N N 100 DC P OP1 doub N N 101 DC P OP2 sing N N 102 DC P "O5'" sing N N 103 DC OP2 HOP2 sing N N 104 DC "O5'" "C5'" sing N N 105 DC "C5'" "C4'" sing N N 106 DC "C5'" "H5'" sing N N 107 DC "C5'" "H5''" sing N N 108 DC "C4'" "O4'" sing N N 109 DC "C4'" "C3'" sing N N 110 DC "C4'" "H4'" sing N N 111 DC "O4'" "C1'" sing N N 112 DC "C3'" "O3'" sing N N 113 DC "C3'" "C2'" sing N N 114 DC "C3'" "H3'" sing N N 115 DC "O3'" "HO3'" sing N N 116 DC "C2'" "C1'" sing N N 117 DC "C2'" "H2'" sing N N 118 DC "C2'" "H2''" sing N N 119 DC "C1'" N1 sing N N 120 DC "C1'" "H1'" sing N N 121 DC N1 C2 sing N N 122 DC N1 C6 sing N N 123 DC C2 O2 doub N N 124 DC C2 N3 sing N N 125 DC N3 C4 doub N N 126 DC C4 N4 sing N N 127 DC C4 C5 sing N N 128 DC N4 H41 sing N N 129 DC N4 H42 sing N N 130 DC C5 C6 doub N N 131 DC C5 H5 sing N N 132 DC C6 H6 sing N N 133 DG OP3 P sing N N 134 DG OP3 HOP3 sing N N 135 DG P OP1 doub N N 136 DG P OP2 sing N N 137 DG P "O5'" sing N N 138 DG OP2 HOP2 sing N N 139 DG "O5'" "C5'" sing N N 140 DG "C5'" "C4'" sing N N 141 DG "C5'" "H5'" sing N N 142 DG "C5'" "H5''" sing N N 143 DG "C4'" "O4'" sing N N 144 DG "C4'" "C3'" sing N N 145 DG "C4'" "H4'" sing N N 146 DG "O4'" "C1'" sing N N 147 DG "C3'" "O3'" sing N N 148 DG "C3'" "C2'" sing N N 149 DG "C3'" "H3'" sing N N 150 DG "O3'" "HO3'" sing N N 151 DG "C2'" "C1'" sing N N 152 DG "C2'" "H2'" sing N N 153 DG "C2'" "H2''" sing N N 154 DG "C1'" N9 sing N N 155 DG "C1'" "H1'" sing N N 156 DG N9 C8 sing Y N 157 DG N9 C4 sing Y N 158 DG C8 N7 doub Y N 159 DG C8 H8 sing N N 160 DG N7 C5 sing Y N 161 DG C5 C6 sing N N 162 DG C5 C4 doub Y N 163 DG C6 O6 doub N N 164 DG C6 N1 sing N N 165 DG N1 C2 sing N N 166 DG N1 H1 sing N N 167 DG C2 N2 sing N N 168 DG C2 N3 doub N N 169 DG N2 H21 sing N N 170 DG N2 H22 sing N N 171 DG N3 C4 sing N N 172 DT OP3 P sing N N 173 DT OP3 HOP3 sing N N 174 DT P OP1 doub N N 175 DT P OP2 sing N N 176 DT P "O5'" sing N N 177 DT OP2 HOP2 sing N N 178 DT "O5'" "C5'" sing N N 179 DT "C5'" "C4'" sing N N 180 DT "C5'" "H5'" sing N N 181 DT "C5'" "H5''" sing N N 182 DT "C4'" "O4'" sing N N 183 DT "C4'" "C3'" sing N N 184 DT "C4'" "H4'" sing N N 185 DT "O4'" "C1'" sing N N 186 DT "C3'" "O3'" sing N N 187 DT "C3'" "C2'" sing N N 188 DT "C3'" "H3'" sing N N 189 DT "O3'" "HO3'" sing N N 190 DT "C2'" "C1'" sing N N 191 DT "C2'" "H2'" sing N N 192 DT "C2'" "H2''" sing N N 193 DT "C1'" N1 sing N N 194 DT "C1'" "H1'" sing N N 195 DT N1 C2 sing N N 196 DT N1 C6 sing N N 197 DT C2 O2 doub N N 198 DT C2 N3 sing N N 199 DT N3 C4 sing N N 200 DT N3 H3 sing N N 201 DT C4 O4 doub N N 202 DT C4 C5 sing N N 203 DT C5 C7 sing N N 204 DT C5 C6 doub N N 205 DT C7 H71 sing N N 206 DT C7 H72 sing N N 207 DT C7 H73 sing N N 208 DT C6 H6 sing N N 209 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XRW 'double helix' 1XRW 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 8 1_555 0.833 -0.223 -0.015 -13.408 -5.488 -1.081 1 A_DC1:DG8_B A 1 ? B 8 ? 19 1 1 A DC 2 1_555 B DG 7 1_555 0.961 -0.291 0.189 -8.938 -0.757 -1.805 2 A_DC2:DG7_B A 2 ? B 7 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 0.389 -0.097 -0.244 3.126 -7.215 -0.053 3 A_DT3:DA6_B A 3 ? B 6 ? 20 1 1 A DC 4 1_555 B DG 5 1_555 0.096 0.004 -0.653 17.720 -3.853 -3.503 4 A_DC4:DG5_B A 4 ? B 5 ? 19 1 1 A DG 5 1_555 B DC 4 1_555 0.089 -0.039 0.418 -18.501 -10.784 -2.942 5 A_DG5:DC4_B A 5 ? B 4 ? 19 1 1 A DT 6 1_555 B DA 3 1_555 -0.763 0.199 0.277 8.057 -11.855 -12.965 6 A_DT6:DA3_B A 6 ? B 3 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.884 -0.328 0.063 8.757 -23.218 -2.130 7 A_DC7:DG2_B A 7 ? B 2 ? 19 1 1 A DC 8 1_555 B DG 1 1_555 -0.004 -0.092 0.544 -2.727 -16.298 -4.761 8 A_DC8:DG1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 8 1_555 A DC 2 1_555 B DG 7 1_555 -0.122 -1.586 3.041 1.274 3.120 31.440 -3.433 0.438 2.867 5.737 -2.342 31.615 1 AA_DC1DC2:DG7DG8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DC 2 1_555 B DG 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.012 -1.428 2.809 5.086 1.523 27.448 -3.263 1.049 2.682 3.172 -10.594 27.947 2 AA_DC2DT3:DA6DG7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DT 3 1_555 B DA 6 1_555 A DC 4 1_555 B DG 5 1_555 -0.259 -1.079 2.859 2.252 4.434 28.902 -2.942 0.923 2.640 8.800 -4.470 29.318 3 AA_DT3DC4:DG5DA6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DG 5 1_555 B DC 4 1_555 A DT 6 1_555 B DA 3 1_555 -0.062 -0.664 2.598 3.735 -1.147 23.372 -1.313 1.138 2.585 -2.805 -9.137 23.692 4 AA_DG5DT6:DA3DC4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DT 6 1_555 B DA 3 1_555 A DC 7 1_555 B DG 2 1_555 0.392 -1.003 3.086 1.346 -2.196 43.576 -1.148 -0.404 3.141 -2.955 -1.811 43.648 5 AA_DT6DC7:DG2DA3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DC 7 1_555 B DG 2 1_555 A DC 8 1_555 B DG 1 1_555 -0.048 -1.342 3.305 -3.549 6.459 31.621 -3.503 -0.520 2.968 11.655 6.404 32.447 6 AA_DC7DC8:DG1DG2_BB A 7 ? B 2 ? A 8 ? B 1 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1XRW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P PT S # loop_