data_1XS9 # _entry.id 1XS9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XS9 pdb_00001xs9 10.2210/pdb1xs9/pdb RCSB RCSB030708 ? ? WWPDB D_1000030708 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2004-10-26 _pdbx_database_PDB_obs_spr.pdb_id 1XS9 _pdbx_database_PDB_obs_spr.replace_pdb_id 1TI9 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XS9 _pdbx_database_status.recvd_initial_deposition_date 2004-10-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dangi, B.' 1 'Gronenborn, A.M.' 2 'Rosner, J.L.' 3 'Martin, R.G.' 4 # _citation.id primary _citation.title ;Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA. ; _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 54 _citation.page_first 45 _citation.page_last 59 _citation.year 2004 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15458404 _citation.pdbx_database_id_DOI 10.1111/j.1365-2958.2004.04250.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dangi, B.' 1 ? primary 'Gronenborn, A.M.' 2 ? primary 'Rosner, J.L.' 3 ? primary 'Martin, R.G.' 4 ? # _cell.entry_id 1XS9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XS9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*GP*AP*TP*TP*TP*AP*GP*CP*AP*AP*AP*AP*CP*GP*TP*GP*GP*CP*AP*T)-3'" 6182.029 1 ? ? 'PROMOTER REGION' ? 2 polymer syn "5'-D(P*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP*AP*AP*TP*C)-3'" 6083.953 1 ? ? 'PROMOTER REGION' ? 3 polymer man 'Multiple antibiotic resistance protein marA' 15723.780 1 ? ? ? ? 4 polymer man 'DNA-directed RNA polymerase alpha chain' 9291.663 1 2.7.7.6 ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name 'RNAP alpha subunit, Transcriptase alpha chain, RNA polymerase alpha subunit' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DT)(DT)(DA)(DG)(DC)(DA)(DA)(DA)(DA)(DC)(DG)(DT)(DG)(DG)(DC)(DA)(DT)' GATTTAGCAAAACGTGGCAT B ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DC)(DC)(DA)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DA)(DT)(DC)' ATGCCACGTTTTGCTAAATC C ? 3 'polypeptide(L)' no no ;GSHMTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNE PILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS ; ;GSHMTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNE PILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS ; A ? 4 'polypeptide(L)' no no ;GSHFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPAS IADE ; ;GSHFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPAS IADE ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DA n 1 13 DC n 1 14 DG n 1 15 DT n 1 16 DG n 1 17 DG n 1 18 DC n 1 19 DA n 1 20 DT n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DC n 2 5 DC n 2 6 DA n 2 7 DC n 2 8 DG n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DG n 2 14 DC n 2 15 DT n 2 16 DA n 2 17 DA n 2 18 DA n 2 19 DT n 2 20 DC n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 THR n 3 6 MET n 3 7 SER n 3 8 ARG n 3 9 ARG n 3 10 ASN n 3 11 THR n 3 12 ASP n 3 13 ALA n 3 14 ILE n 3 15 THR n 3 16 ILE n 3 17 HIS n 3 18 SER n 3 19 ILE n 3 20 LEU n 3 21 ASP n 3 22 TRP n 3 23 ILE n 3 24 GLU n 3 25 ASP n 3 26 ASN n 3 27 LEU n 3 28 GLU n 3 29 SER n 3 30 PRO n 3 31 LEU n 3 32 SER n 3 33 LEU n 3 34 GLU n 3 35 LYS n 3 36 VAL n 3 37 SER n 3 38 GLU n 3 39 ARG n 3 40 SER n 3 41 GLY n 3 42 TYR n 3 43 SER n 3 44 LYS n 3 45 TRP n 3 46 HIS n 3 47 LEU n 3 48 GLN n 3 49 ARG n 3 50 MET n 3 51 PHE n 3 52 LYS n 3 53 LYS n 3 54 GLU n 3 55 THR n 3 56 GLY n 3 57 HIS n 3 58 SER n 3 59 LEU n 3 60 GLY n 3 61 GLN n 3 62 TYR n 3 63 ILE n 3 64 ARG n 3 65 SER n 3 66 ARG n 3 67 LYS n 3 68 MET n 3 69 THR n 3 70 GLU n 3 71 ILE n 3 72 ALA n 3 73 GLN n 3 74 LYS n 3 75 LEU n 3 76 LYS n 3 77 GLU n 3 78 SER n 3 79 ASN n 3 80 GLU n 3 81 PRO n 3 82 ILE n 3 83 LEU n 3 84 TYR n 3 85 LEU n 3 86 ALA n 3 87 GLU n 3 88 ARG n 3 89 TYR n 3 90 GLY n 3 91 PHE n 3 92 GLU n 3 93 SER n 3 94 GLN n 3 95 GLN n 3 96 THR n 3 97 LEU n 3 98 THR n 3 99 ARG n 3 100 THR n 3 101 PHE n 3 102 LYS n 3 103 ASN n 3 104 TYR n 3 105 PHE n 3 106 ASP n 3 107 VAL n 3 108 PRO n 3 109 PRO n 3 110 HIS n 3 111 LYS n 3 112 TYR n 3 113 ARG n 3 114 MET n 3 115 THR n 3 116 ASN n 3 117 MET n 3 118 GLN n 3 119 GLY n 3 120 GLU n 3 121 SER n 3 122 ARG n 3 123 PHE n 3 124 LEU n 3 125 HIS n 3 126 PRO n 3 127 LEU n 3 128 ASN n 3 129 HIS n 3 130 TYR n 3 131 ASN n 3 132 SER n 4 1 GLY n 4 2 SER n 4 3 HIS n 4 4 PHE n 4 5 ASP n 4 6 PRO n 4 7 ILE n 4 8 LEU n 4 9 LEU n 4 10 ARG n 4 11 PRO n 4 12 VAL n 4 13 ASP n 4 14 ASP n 4 15 LEU n 4 16 GLU n 4 17 LEU n 4 18 THR n 4 19 VAL n 4 20 ARG n 4 21 SER n 4 22 ALA n 4 23 ASN n 4 24 CYS n 4 25 LEU n 4 26 LYS n 4 27 ALA n 4 28 GLU n 4 29 ALA n 4 30 ILE n 4 31 HIS n 4 32 TYR n 4 33 ILE n 4 34 GLY n 4 35 ASP n 4 36 LEU n 4 37 VAL n 4 38 GLN n 4 39 ARG n 4 40 THR n 4 41 GLU n 4 42 VAL n 4 43 GLU n 4 44 LEU n 4 45 LEU n 4 46 LYS n 4 47 THR n 4 48 PRO n 4 49 ASN n 4 50 LEU n 4 51 GLY n 4 52 LYS n 4 53 LYS n 4 54 SER n 4 55 LEU n 4 56 THR n 4 57 GLU n 4 58 ILE n 4 59 LYS n 4 60 ASP n 4 61 VAL n 4 62 LEU n 4 63 ALA n 4 64 SER n 4 65 ARG n 4 66 GLY n 4 67 LEU n 4 68 SER n 4 69 LEU n 4 70 GLY n 4 71 MET n 4 72 ARG n 4 73 LEU n 4 74 GLU n 4 75 ASN n 4 76 TRP n 4 77 PRO n 4 78 PRO n 4 79 ALA n 4 80 SER n 4 81 ILE n 4 82 ALA n 4 83 ASP n 4 84 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? ? Escherichia marA ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3) PLYSS' ? ? ? ? ? ? ? PLASMID ? ? ? PET15B ? ? 4 1 sample ? ? ? ? Escherichia 'rpoA, pez, phs, sez' ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3)PLYSS' ? ? ? ? ? ? ? PLASMID ? ? ? PET15B ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP MARA_ECOLI 3 ;MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPIL YLAERYGFESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS ; 1 P0ACH5 ? 2 UNP RPOA_ECOLI 4 ;FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD E ; 249 P0A7Z4 ? 3 PDB 1XS9 1 ? ? 1XS9 ? 4 PDB 1XS9 2 ? ? 1XS9 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XS9 A 4 ? 132 ? P0ACH5 1 ? 129 ? 1 129 2 2 1XS9 D 4 ? 84 ? P0A7Z4 249 ? 329 ? 249 329 3 3 1XS9 B 1 ? 20 ? 1XS9 404 ? 423 ? 404 423 4 4 1XS9 C 1 ? 20 ? 1XS9 428 ? 447 ? 428 447 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1XS9 GLY A 1 ? UNP P0ACH5 ? ? 'cloning artifact' -2 1 1 1XS9 SER A 2 ? UNP P0ACH5 ? ? 'cloning artifact' -1 2 1 1XS9 HIS A 3 ? UNP P0ACH5 ? ? 'cloning artifact' 0 3 2 1XS9 GLY D 1 ? UNP P0A7Z4 ? ? 'cloning artifact' 246 4 2 1XS9 SER D 2 ? UNP P0A7Z4 ? ? 'cloning artifact' 247 5 2 1XS9 HIS D 3 ? UNP P0A7Z4 ? ? 'cloning artifact' 248 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type HSQC _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'AS DESCRIBED IN PAPER' _pdbx_nmr_sample_details.solvent_system ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 600 ? 2 DMX Bruker 500 ? # _pdbx_nmr_refine.entry_id 1XS9 _pdbx_nmr_refine.method 'MODEL BASED ON CHEMICAL SHIFT PERTURBATION MAPPING' _pdbx_nmr_refine.details 'Program HADDOCK was used to generate the nodels' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1XS9 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XS9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement HADDOCK ? JONES,ZOU,COWAN,KJELDGAARD 1 'structure solution' NMRPipe ? ? 2 'structure solution' XwinNMR ? ? 3 'structure solution' HADDOCK ? ? 4 # _exptl.entry_id 1XS9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1XS9 _struct.title 'A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XS9 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TERNARY COMPLEX, MARA, RNA POLYMERASE, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 10 ? THR C 15 ? ASN A 7 THR A 12 1 ? 6 HELX_P HELX_P2 2 ILE C 19 ? ASP C 25 ? ILE A 16 ASP A 22 1 ? 7 HELX_P HELX_P3 3 VAL C 36 ? GLY C 41 ? VAL A 33 GLY A 38 5 ? 6 HELX_P HELX_P4 4 SER C 43 ? LYS C 53 ? SER A 40 LYS A 50 1 ? 11 HELX_P HELX_P5 5 SER C 58 ? GLU C 77 ? SER A 55 GLU A 74 1 ? 20 HELX_P HELX_P6 6 PRO C 81 ? GLY C 90 ? PRO A 78 GLY A 87 1 ? 10 HELX_P HELX_P7 7 SER C 93 ? ASN C 103 ? SER A 90 ASN A 100 1 ? 11 HELX_P HELX_P8 8 PRO C 108 ? THR C 115 ? PRO A 105 THR A 112 1 ? 8 HELX_P HELX_P9 9 PRO D 11 ? LEU D 15 ? PRO D 256 LEU D 260 5 ? 5 HELX_P HELX_P10 10 SER D 21 ? LYS D 26 ? SER D 266 LYS D 271 1 ? 6 HELX_P HELX_P11 11 TYR D 32 ? VAL D 37 ? TYR D 277 VAL D 282 1 ? 6 HELX_P HELX_P12 12 THR D 40 ? LEU D 45 ? THR D 285 LEU D 290 1 ? 6 HELX_P HELX_P13 13 GLY D 51 ? LYS D 53 ? GLY D 296 LYS D 298 5 ? 3 HELX_P HELX_P14 14 SER D 54 ? ARG D 65 ? SER D 299 ARG D 310 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 20 N3 ? ? B DG 404 C DC 447 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 20 O2 ? ? B DG 404 C DC 447 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 20 N4 ? ? B DG 404 C DC 447 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 19 N3 ? ? B DA 405 C DT 446 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 19 O4 ? ? B DA 405 C DT 446 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 18 N1 ? ? B DT 406 C DA 445 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 18 N6 ? ? B DT 406 C DA 445 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 17 N1 ? ? B DT 407 C DA 444 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 17 N6 ? ? B DT 407 C DA 444 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 16 N1 ? ? B DT 408 C DA 443 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 16 N6 ? ? B DT 408 C DA 443 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 15 N3 ? ? B DA 409 C DT 442 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 15 O4 ? ? B DA 409 C DT 442 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG 410 C DC 441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG 410 C DC 441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG 410 C DC 441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DT 15 O2 ? ? B DG 410 C DT 442 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 13 N1 ? ? B DC 411 C DG 440 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 13 O6 ? ? B DC 411 C DG 440 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 13 N2 ? ? B DC 411 C DG 440 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 412 C DT 438 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 12 N3 ? ? B DA 412 C DT 439 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 12 O4 ? ? B DA 412 C DT 439 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 413 C DT 437 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 413 C DT 438 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 413 C DT 438 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 414 C DT 436 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog28 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 414 C DT 437 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 414 C DT 437 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DG 8 O6 ? ? B DA 415 C DG 435 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog31 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 415 C DT 436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 415 C DT 436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 8 N1 ? ? B DC 416 C DG 435 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 8 O6 ? ? B DC 416 C DG 435 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 8 N2 ? ? B DC 416 C DG 435 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 417 C DC 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 417 C DC 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 417 C DC 434 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 418 C DA 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 418 C DA 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 419 C DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 419 C DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 419 C DC 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 420 C DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 420 C DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 420 C DC 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 421 C DG 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 421 C DG 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 421 C DG 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 422 C DT 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 422 C DT 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DT 20 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 423 C DA 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DT 20 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 423 C DA 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1XS9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XS9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 404 404 DG G B . n A 1 2 DA 2 405 405 DA A B . n A 1 3 DT 3 406 406 DT T B . n A 1 4 DT 4 407 407 DT T B . n A 1 5 DT 5 408 408 DT T B . n A 1 6 DA 6 409 409 DA A B . n A 1 7 DG 7 410 410 DG G B . n A 1 8 DC 8 411 411 DC C B . n A 1 9 DA 9 412 412 DA A B . n A 1 10 DA 10 413 413 DA A B . n A 1 11 DA 11 414 414 DA A B . n A 1 12 DA 12 415 415 DA A B . n A 1 13 DC 13 416 416 DC C B . n A 1 14 DG 14 417 417 DG G B . n A 1 15 DT 15 418 418 DT T B . n A 1 16 DG 16 419 419 DG G B . n A 1 17 DG 17 420 420 DG G B . n A 1 18 DC 18 421 421 DC C B . n A 1 19 DA 19 422 422 DA A B . n A 1 20 DT 20 423 423 DT T B . n B 2 1 DA 1 428 428 DA A C . n B 2 2 DT 2 429 429 DT T C . n B 2 3 DG 3 430 430 DG G C . n B 2 4 DC 4 431 431 DC C C . n B 2 5 DC 5 432 432 DC C C . n B 2 6 DA 6 433 433 DA A C . n B 2 7 DC 7 434 434 DC C C . n B 2 8 DG 8 435 435 DG G C . n B 2 9 DT 9 436 436 DT T C . n B 2 10 DT 10 437 437 DT T C . n B 2 11 DT 11 438 438 DT T C . n B 2 12 DT 12 439 439 DT T C . n B 2 13 DG 13 440 440 DG G C . n B 2 14 DC 14 441 441 DC C C . n B 2 15 DT 15 442 442 DT T C . n B 2 16 DA 16 443 443 DA A C . n B 2 17 DA 17 444 444 DA A C . n B 2 18 DA 18 445 445 DA A C . n B 2 19 DT 19 446 446 DT T C . n B 2 20 DC 20 447 447 DC C C . n C 3 1 GLY 1 -2 ? ? ? A . n C 3 2 SER 2 -1 ? ? ? A . n C 3 3 HIS 3 0 ? ? ? A . n C 3 4 MET 4 1 1 MET MET A . n C 3 5 THR 5 2 2 THR THR A . n C 3 6 MET 6 3 3 MET MET A . n C 3 7 SER 7 4 4 SER SER A . n C 3 8 ARG 8 5 5 ARG ARG A . n C 3 9 ARG 9 6 6 ARG ARG A . n C 3 10 ASN 10 7 7 ASN ASN A . n C 3 11 THR 11 8 8 THR THR A . n C 3 12 ASP 12 9 9 ASP ASP A . n C 3 13 ALA 13 10 10 ALA ALA A . n C 3 14 ILE 14 11 11 ILE ILE A . n C 3 15 THR 15 12 12 THR THR A . n C 3 16 ILE 16 13 13 ILE ILE A . n C 3 17 HIS 17 14 14 HIS HIS A . n C 3 18 SER 18 15 15 SER SER A . n C 3 19 ILE 19 16 16 ILE ILE A . n C 3 20 LEU 20 17 17 LEU LEU A . n C 3 21 ASP 21 18 18 ASP ASP A . n C 3 22 TRP 22 19 19 TRP TRP A . n C 3 23 ILE 23 20 20 ILE ILE A . n C 3 24 GLU 24 21 21 GLU GLU A . n C 3 25 ASP 25 22 22 ASP ASP A . n C 3 26 ASN 26 23 23 ASN ASN A . n C 3 27 LEU 27 24 24 LEU LEU A . n C 3 28 GLU 28 25 25 GLU GLU A . n C 3 29 SER 29 26 26 SER SER A . n C 3 30 PRO 30 27 27 PRO PRO A . n C 3 31 LEU 31 28 28 LEU LEU A . n C 3 32 SER 32 29 29 SER SER A . n C 3 33 LEU 33 30 30 LEU LEU A . n C 3 34 GLU 34 31 31 GLU GLU A . n C 3 35 LYS 35 32 32 LYS LYS A . n C 3 36 VAL 36 33 33 VAL VAL A . n C 3 37 SER 37 34 34 SER SER A . n C 3 38 GLU 38 35 35 GLU GLU A . n C 3 39 ARG 39 36 36 ARG ARG A . n C 3 40 SER 40 37 37 SER SER A . n C 3 41 GLY 41 38 38 GLY GLY A . n C 3 42 TYR 42 39 39 TYR TYR A . n C 3 43 SER 43 40 40 SER SER A . n C 3 44 LYS 44 41 41 LYS LYS A . n C 3 45 TRP 45 42 42 TRP TRP A . n C 3 46 HIS 46 43 43 HIS HIS A . n C 3 47 LEU 47 44 44 LEU LEU A . n C 3 48 GLN 48 45 45 GLN GLN A . n C 3 49 ARG 49 46 46 ARG ARG A . n C 3 50 MET 50 47 47 MET MET A . n C 3 51 PHE 51 48 48 PHE PHE A . n C 3 52 LYS 52 49 49 LYS LYS A . n C 3 53 LYS 53 50 50 LYS LYS A . n C 3 54 GLU 54 51 51 GLU GLU A . n C 3 55 THR 55 52 52 THR THR A . n C 3 56 GLY 56 53 53 GLY GLY A . n C 3 57 HIS 57 54 54 HIS HIS A . n C 3 58 SER 58 55 55 SER SER A . n C 3 59 LEU 59 56 56 LEU LEU A . n C 3 60 GLY 60 57 57 GLY GLY A . n C 3 61 GLN 61 58 58 GLN GLN A . n C 3 62 TYR 62 59 59 TYR TYR A . n C 3 63 ILE 63 60 60 ILE ILE A . n C 3 64 ARG 64 61 61 ARG ARG A . n C 3 65 SER 65 62 62 SER SER A . n C 3 66 ARG 66 63 63 ARG ARG A . n C 3 67 LYS 67 64 64 LYS LYS A . n C 3 68 MET 68 65 65 MET MET A . n C 3 69 THR 69 66 66 THR THR A . n C 3 70 GLU 70 67 67 GLU GLU A . n C 3 71 ILE 71 68 68 ILE ILE A . n C 3 72 ALA 72 69 69 ALA ALA A . n C 3 73 GLN 73 70 70 GLN GLN A . n C 3 74 LYS 74 71 71 LYS LYS A . n C 3 75 LEU 75 72 72 LEU LEU A . n C 3 76 LYS 76 73 73 LYS LYS A . n C 3 77 GLU 77 74 74 GLU GLU A . n C 3 78 SER 78 75 75 SER SER A . n C 3 79 ASN 79 76 76 ASN ASN A . n C 3 80 GLU 80 77 77 GLU GLU A . n C 3 81 PRO 81 78 78 PRO PRO A . n C 3 82 ILE 82 79 79 ILE ILE A . n C 3 83 LEU 83 80 80 LEU LEU A . n C 3 84 TYR 84 81 81 TYR TYR A . n C 3 85 LEU 85 82 82 LEU LEU A . n C 3 86 ALA 86 83 83 ALA ALA A . n C 3 87 GLU 87 84 84 GLU GLU A . n C 3 88 ARG 88 85 85 ARG ARG A . n C 3 89 TYR 89 86 86 TYR TYR A . n C 3 90 GLY 90 87 87 GLY GLY A . n C 3 91 PHE 91 88 88 PHE PHE A . n C 3 92 GLU 92 89 89 GLU GLU A . n C 3 93 SER 93 90 90 SER SER A . n C 3 94 GLN 94 91 91 GLN GLN A . n C 3 95 GLN 95 92 92 GLN GLN A . n C 3 96 THR 96 93 93 THR THR A . n C 3 97 LEU 97 94 94 LEU LEU A . n C 3 98 THR 98 95 95 THR THR A . n C 3 99 ARG 99 96 96 ARG ARG A . n C 3 100 THR 100 97 97 THR THR A . n C 3 101 PHE 101 98 98 PHE PHE A . n C 3 102 LYS 102 99 99 LYS LYS A . n C 3 103 ASN 103 100 100 ASN ASN A . n C 3 104 TYR 104 101 101 TYR TYR A . n C 3 105 PHE 105 102 102 PHE PHE A . n C 3 106 ASP 106 103 103 ASP ASP A . n C 3 107 VAL 107 104 104 VAL VAL A . n C 3 108 PRO 108 105 105 PRO PRO A . n C 3 109 PRO 109 106 106 PRO PRO A . n C 3 110 HIS 110 107 107 HIS HIS A . n C 3 111 LYS 111 108 108 LYS LYS A . n C 3 112 TYR 112 109 109 TYR TYR A . n C 3 113 ARG 113 110 110 ARG ARG A . n C 3 114 MET 114 111 111 MET MET A . n C 3 115 THR 115 112 112 THR THR A . n C 3 116 ASN 116 113 113 ASN ASN A . n C 3 117 MET 117 114 114 MET MET A . n C 3 118 GLN 118 115 115 GLN GLN A . n C 3 119 GLY 119 116 116 GLY GLY A . n C 3 120 GLU 120 117 117 GLU GLU A . n C 3 121 SER 121 118 118 SER SER A . n C 3 122 ARG 122 119 119 ARG ARG A . n C 3 123 PHE 123 120 120 PHE PHE A . n C 3 124 LEU 124 121 121 LEU LEU A . n C 3 125 HIS 125 122 122 HIS HIS A . n C 3 126 PRO 126 123 123 PRO PRO A . n C 3 127 LEU 127 124 124 LEU LEU A . n C 3 128 ASN 128 125 125 ASN ASN A . n C 3 129 HIS 129 126 126 HIS HIS A . n C 3 130 TYR 130 127 127 TYR TYR A . n C 3 131 ASN 131 128 128 ASN ASN A . n C 3 132 SER 132 129 129 SER SER A . n D 4 1 GLY 1 246 ? ? ? D . n D 4 2 SER 2 247 ? ? ? D . n D 4 3 HIS 3 248 ? ? ? D . n D 4 4 PHE 4 249 249 PHE PHE D . n D 4 5 ASP 5 250 250 ASP ASP D . n D 4 6 PRO 6 251 251 PRO PRO D . n D 4 7 ILE 7 252 252 ILE ILE D . n D 4 8 LEU 8 253 253 LEU LEU D . n D 4 9 LEU 9 254 254 LEU LEU D . n D 4 10 ARG 10 255 255 ARG ARG D . n D 4 11 PRO 11 256 256 PRO PRO D . n D 4 12 VAL 12 257 257 VAL VAL D . n D 4 13 ASP 13 258 258 ASP ASP D . n D 4 14 ASP 14 259 259 ASP ASP D . n D 4 15 LEU 15 260 260 LEU LEU D . n D 4 16 GLU 16 261 261 GLU GLU D . n D 4 17 LEU 17 262 262 LEU LEU D . n D 4 18 THR 18 263 263 THR THR D . n D 4 19 VAL 19 264 264 VAL VAL D . n D 4 20 ARG 20 265 265 ARG ARG D . n D 4 21 SER 21 266 266 SER SER D . n D 4 22 ALA 22 267 267 ALA ALA D . n D 4 23 ASN 23 268 268 ASN ASN D . n D 4 24 CYS 24 269 269 CYS CYS D . n D 4 25 LEU 25 270 270 LEU LEU D . n D 4 26 LYS 26 271 271 LYS LYS D . n D 4 27 ALA 27 272 272 ALA ALA D . n D 4 28 GLU 28 273 273 GLU GLU D . n D 4 29 ALA 29 274 274 ALA ALA D . n D 4 30 ILE 30 275 275 ILE ILE D . n D 4 31 HIS 31 276 276 HIS HIS D . n D 4 32 TYR 32 277 277 TYR TYR D . n D 4 33 ILE 33 278 278 ILE ILE D . n D 4 34 GLY 34 279 279 GLY GLY D . n D 4 35 ASP 35 280 280 ASP ASP D . n D 4 36 LEU 36 281 281 LEU LEU D . n D 4 37 VAL 37 282 282 VAL VAL D . n D 4 38 GLN 38 283 283 GLN GLN D . n D 4 39 ARG 39 284 284 ARG ARG D . n D 4 40 THR 40 285 285 THR THR D . n D 4 41 GLU 41 286 286 GLU GLU D . n D 4 42 VAL 42 287 287 VAL VAL D . n D 4 43 GLU 43 288 288 GLU GLU D . n D 4 44 LEU 44 289 289 LEU LEU D . n D 4 45 LEU 45 290 290 LEU LEU D . n D 4 46 LYS 46 291 291 LYS LYS D . n D 4 47 THR 47 292 292 THR THR D . n D 4 48 PRO 48 293 293 PRO PRO D . n D 4 49 ASN 49 294 294 ASN ASN D . n D 4 50 LEU 50 295 295 LEU LEU D . n D 4 51 GLY 51 296 296 GLY GLY D . n D 4 52 LYS 52 297 297 LYS LYS D . n D 4 53 LYS 53 298 298 LYS LYS D . n D 4 54 SER 54 299 299 SER SER D . n D 4 55 LEU 55 300 300 LEU LEU D . n D 4 56 THR 56 301 301 THR THR D . n D 4 57 GLU 57 302 302 GLU GLU D . n D 4 58 ILE 58 303 303 ILE ILE D . n D 4 59 LYS 59 304 304 LYS LYS D . n D 4 60 ASP 60 305 305 ASP ASP D . n D 4 61 VAL 61 306 306 VAL VAL D . n D 4 62 LEU 62 307 307 LEU LEU D . n D 4 63 ALA 63 308 308 ALA ALA D . n D 4 64 SER 64 309 309 SER SER D . n D 4 65 ARG 65 310 310 ARG ARG D . n D 4 66 GLY 66 311 311 GLY GLY D . n D 4 67 LEU 67 312 312 LEU LEU D . n D 4 68 SER 68 313 313 SER SER D . n D 4 69 LEU 69 314 314 LEU LEU D . n D 4 70 GLY 70 315 315 GLY GLY D . n D 4 71 MET 71 316 316 MET MET D . n D 4 72 ARG 72 317 317 ARG ARG D . n D 4 73 LEU 73 318 318 LEU LEU D . n D 4 74 GLU 74 319 319 GLU GLU D . n D 4 75 ASN 75 320 320 ASN ASN D . n D 4 76 TRP 76 321 321 TRP TRP D . n D 4 77 PRO 77 322 322 PRO PRO D . n D 4 78 PRO 78 323 323 PRO PRO D . n D 4 79 ALA 79 324 324 ALA ALA D . n D 4 80 SER 80 325 325 SER SER D . n D 4 81 ILE 81 326 326 ILE ILE D . n D 4 82 ALA 82 327 327 ALA ALA D . n D 4 83 ASP 83 328 328 ASP ASP D . n D 4 84 GLU 84 329 329 GLU GLU D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 B DC 421 ? ? H21 C DG 430 ? ? 1.57 2 1 OE2 A GLU 35 ? ? HZ1 A LYS 41 ? ? 1.59 3 1 H21 B DG 420 ? ? O2 C DC 431 ? ? 1.59 4 1 OD2 A ASP 22 ? ? HZ1 D LYS 298 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? 61.65 64.33 2 1 MET A 3 ? ? -133.62 -60.21 3 1 ARG A 5 ? ? -132.59 -64.80 4 1 HIS A 14 ? ? -79.60 31.61 5 1 SER A 15 ? ? -147.80 21.31 6 1 SER A 26 ? ? -133.15 -57.02 7 1 TYR A 101 ? ? -123.73 -58.79 8 1 ASP A 103 ? ? 71.87 -0.57 9 1 PRO A 123 ? ? -72.21 35.93 10 1 HIS A 126 ? ? -151.62 -32.25 11 1 ASN A 128 ? ? 73.13 -26.41 12 1 GLU D 261 ? ? 62.36 73.59 13 1 LEU D 262 ? ? -120.33 -138.34 14 1 SER D 266 ? ? -168.82 -71.54 15 1 PRO D 293 ? ? -64.75 66.21 16 1 ASN D 294 ? ? 176.33 -47.41 17 1 TRP D 321 ? ? -134.67 -36.09 18 1 PRO D 323 ? ? -81.03 -155.06 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? C GLY 1 2 1 Y 1 A SER -1 ? C SER 2 3 1 Y 1 A HIS 0 ? C HIS 3 4 1 Y 1 D GLY 246 ? D GLY 1 5 1 Y 1 D SER 247 ? D SER 2 6 1 Y 1 D HIS 248 ? D HIS 3 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XS9 'double helix' 1XS9 'a-form double helix' 1XS9 'mismatched base pair' 1XS9 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 20 1_555 -0.344 -0.306 0.437 5.424 -28.855 -4.063 1 B_DG404:DC447_C B 404 ? C 447 ? 19 1 1 A DA 2 1_555 B DT 19 1_555 0.160 -0.268 0.761 0.149 -19.011 -2.174 2 B_DA405:DT446_C B 405 ? C 446 ? 20 1 1 A DT 3 1_555 B DA 18 1_555 -0.025 -0.318 0.914 0.377 -25.882 -3.113 3 B_DT406:DA445_C B 406 ? C 445 ? 20 1 1 A DT 4 1_555 B DA 17 1_555 0.043 -0.199 0.698 1.715 -19.405 0.568 4 B_DT407:DA444_C B 407 ? C 444 ? 20 1 1 A DT 5 1_555 B DA 16 1_555 -0.083 -0.107 0.715 -5.593 -12.754 0.711 5 B_DT408:DA443_C B 408 ? C 443 ? 20 1 1 A DA 6 1_555 B DT 15 1_555 0.181 -0.114 -0.826 -39.470 14.394 -9.764 6 B_DA409:DT442_C B 409 ? C 442 ? 20 1 1 A DG 7 1_555 B DC 14 1_555 -0.637 -0.211 -0.073 -8.310 -14.125 3.660 7 B_DG410:DC441_C B 410 ? C 441 ? 19 1 1 A DC 8 1_555 B DG 13 1_555 0.426 -0.410 0.542 -0.711 -27.329 1.843 8 B_DC411:DG440_C B 411 ? C 440 ? 19 1 1 A DA 9 1_555 B DT 12 1_555 0.174 -0.394 0.848 -6.364 -23.897 -5.835 9 B_DA412:DT439_C B 412 ? C 439 ? 20 1 1 A DA 10 1_555 B DT 11 1_555 0.378 -0.219 0.918 -5.368 -28.507 -12.170 10 B_DA413:DT438_C B 413 ? C 438 ? 20 1 1 A DA 11 1_555 B DT 10 1_555 0.218 -0.245 0.479 -0.782 -32.580 -10.422 11 B_DA414:DT437_C B 414 ? C 437 ? 20 1 1 A DA 12 1_555 B DT 9 1_555 0.341 -0.348 1.063 15.751 -22.371 -11.650 12 B_DA415:DT436_C B 415 ? C 436 ? 20 1 1 A DC 13 1_555 B DG 8 1_555 0.107 -0.467 0.809 5.367 -32.099 -5.418 13 B_DC416:DG435_C B 416 ? C 435 ? 19 1 1 A DG 14 1_555 B DC 7 1_555 -0.520 -0.290 -0.414 -20.976 -20.640 1.804 14 B_DG417:DC434_C B 417 ? C 434 ? 19 1 1 A DT 15 1_555 B DA 6 1_555 0.181 -0.142 0.051 0.591 -17.462 -2.692 15 B_DT418:DA433_C B 418 ? C 433 ? 20 1 1 A DG 16 1_555 B DC 5 1_555 -0.147 -0.545 1.038 5.664 -20.452 -9.812 16 B_DG419:DC432_C B 419 ? C 432 ? 19 1 1 A DG 17 1_555 B DC 4 1_555 -0.403 -0.271 1.061 20.437 -9.130 1.106 17 B_DG420:DC431_C B 420 ? C 431 ? 19 1 1 A DC 18 1_555 B DG 3 1_555 0.295 -0.201 -0.285 17.481 -16.390 3.850 18 B_DC421:DG430_C B 421 ? C 430 ? 19 1 1 A DA 19 1_555 B DT 2 1_555 0.006 -0.288 -0.045 -6.743 -17.074 -1.167 19 B_DA422:DT429_C B 422 ? C 429 ? 20 1 1 A DT 20 1_555 B DA 1 1_555 -0.142 -0.338 0.696 -8.471 -25.582 -12.694 20 B_DT423:DA428_C B 423 ? C 428 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 20 1_555 A DA 2 1_555 B DT 19 1_555 0.356 -1.352 3.060 -4.436 -2.896 43.294 -1.557 -0.881 3.091 -3.907 5.986 43.602 1 BB_DG404DA405:DT446DC447_CC B 404 ? C 447 ? B 405 ? C 446 ? 1 A DA 2 1_555 B DT 19 1_555 A DT 3 1_555 B DA 18 1_555 0.073 -1.405 3.182 0.021 -9.542 33.143 -0.838 -0.120 3.443 -16.311 -0.035 34.452 2 BB_DA405DT406:DA445DT446_CC B 405 ? C 446 ? B 406 ? C 445 ? 1 A DT 3 1_555 B DA 18 1_555 A DT 4 1_555 B DA 17 1_555 0.346 -1.336 3.063 0.955 -10.376 34.997 -0.701 -0.421 3.320 -16.799 -1.546 36.469 3 BB_DT406DT407:DA444DA445_CC B 406 ? C 445 ? B 407 ? C 444 ? 1 A DT 4 1_555 B DA 17 1_555 A DT 5 1_555 B DA 16 1_555 0.260 -1.937 3.654 0.112 -19.793 31.233 0.418 -0.392 4.129 -32.947 -0.186 36.845 4 BB_DT407DT408:DA443DA444_CC B 407 ? C 444 ? B 408 ? C 443 ? 1 A DT 5 1_555 B DA 16 1_555 A DA 6 1_555 B DT 15 1_555 -1.962 -2.345 3.831 2.219 12.174 34.368 -5.497 3.454 2.743 19.823 -3.613 36.464 5 BB_DT408DA409:DT442DA443_CC B 408 ? C 443 ? B 409 ? C 442 ? 1 A DA 6 1_555 B DT 15 1_555 A DG 7 1_555 B DC 14 1_555 0.972 -0.598 2.959 -0.611 -3.330 24.123 -0.463 -2.479 2.987 -7.917 1.454 24.356 6 BB_DA409DG410:DC441DT442_CC B 409 ? C 442 ? B 410 ? C 441 ? 1 A DG 7 1_555 B DC 14 1_555 A DC 8 1_555 B DG 13 1_555 -0.169 -0.847 3.003 -2.086 -1.133 39.209 -1.135 0.022 3.030 -1.687 3.105 39.278 7 BB_DG410DC411:DG440DC441_CC B 410 ? C 441 ? B 411 ? C 440 ? 1 A DC 8 1_555 B DG 13 1_555 A DA 9 1_555 B DT 12 1_555 0.070 -0.900 3.110 -1.140 3.235 33.532 -2.046 -0.294 3.009 5.589 1.970 33.702 8 BB_DC411DA412:DT439DG440_CC B 411 ? C 440 ? B 412 ? C 439 ? 1 A DA 9 1_555 B DT 12 1_555 A DA 10 1_555 B DT 11 1_555 -0.450 -1.298 3.003 2.154 -14.012 38.050 -0.329 0.887 3.237 -20.638 -3.172 40.514 9 BB_DA412DA413:DT438DT439_CC B 412 ? C 439 ? B 413 ? C 438 ? 1 A DA 10 1_555 B DT 11 1_555 A DA 11 1_555 B DT 10 1_555 -0.598 -0.902 2.797 2.904 -8.261 34.890 -0.424 1.335 2.872 -13.517 -4.751 35.939 10 BB_DA413DA414:DT437DT438_CC B 413 ? C 438 ? B 414 ? C 437 ? 1 A DA 11 1_555 B DT 10 1_555 A DA 12 1_555 B DT 9 1_555 0.562 -0.796 2.508 -4.914 -10.391 31.320 -0.014 -1.630 2.523 -18.485 8.742 33.313 11 BB_DA414DA415:DT436DT437_CC B 414 ? C 437 ? B 415 ? C 436 ? 1 A DA 12 1_555 B DT 9 1_555 A DC 13 1_555 B DG 8 1_555 0.985 -1.580 3.420 2.623 -16.301 36.751 -0.147 -1.087 3.820 -24.401 -3.926 40.172 12 BB_DA415DC416:DG435DT436_CC B 415 ? C 436 ? B 416 ? C 435 ? 1 A DC 13 1_555 B DG 8 1_555 A DG 14 1_555 B DC 7 1_555 -0.802 -1.177 3.224 2.617 20.231 38.675 -3.346 1.309 2.306 28.282 -3.659 43.542 13 BB_DC416DG417:DC434DG435_CC B 416 ? C 435 ? B 417 ? C 434 ? 1 A DG 14 1_555 B DC 7 1_555 A DT 15 1_555 B DA 6 1_555 0.288 -0.350 2.668 -2.551 -0.672 30.603 -0.553 -0.951 2.642 -1.270 4.821 30.714 14 BB_DG417DT418:DA433DC434_CC B 417 ? C 434 ? B 418 ? C 433 ? 1 A DT 15 1_555 B DA 6 1_555 A DG 16 1_555 B DC 5 1_555 -0.558 -0.754 3.232 -5.668 -3.240 33.156 -0.766 0.029 3.336 -5.610 9.815 33.775 15 BB_DT418DG419:DC432DA433_CC B 418 ? C 433 ? B 419 ? C 432 ? 1 A DG 16 1_555 B DC 5 1_555 A DG 17 1_555 B DC 4 1_555 1.618 -0.980 2.946 -2.219 -10.516 30.096 0.005 -3.320 2.987 -19.487 4.113 31.916 16 BB_DG419DG420:DC431DC432_CC B 419 ? C 432 ? B 420 ? C 431 ? 1 A DG 17 1_555 B DC 4 1_555 A DC 18 1_555 B DG 3 1_555 0.432 -1.609 3.492 6.484 -9.768 38.510 -1.077 0.210 3.795 -14.408 -9.564 40.190 17 BB_DG420DC421:DG430DC431_CC B 420 ? C 431 ? B 421 ? C 430 ? 1 A DC 18 1_555 B DG 3 1_555 A DA 19 1_555 B DT 2 1_555 -0.119 -1.638 3.829 -1.719 7.181 37.197 -3.559 -0.065 3.466 11.124 2.663 37.897 18 BB_DC421DA422:DT429DG430_CC B 421 ? C 430 ? B 422 ? C 429 ? 1 A DA 19 1_555 B DT 2 1_555 A DT 20 1_555 B DA 1 1_555 -0.375 -1.414 3.259 -2.783 -8.520 32.917 -0.983 0.173 3.524 -14.699 4.801 34.083 19 BB_DA422DT423:DA428DT429_CC B 422 ? C 429 ? B 423 ? C 428 ? #