HEADER OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) 14-MAR-95 1XSO TITLE THREE-DIMENSIONAL STRUCTURE OF XENOPUS LAEVIS CU,ZN SUPEROXIDE TITLE 2 DISMUTASE B DETERMINED BY X-RAY CRYSTALLOGRAPHY AT 1.5 ANGSTROMS TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER,ZINC SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK233-2 TRC PROMOTER KEYWDS OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) EXPDTA X-RAY DIFFRACTION AUTHOR K.DJINOVIC CARUGO,A.CODA,A.BATTISTONI,M.T.CARRI,F.POLTICELLI, AUTHOR 2 A.DESIDERI,G.ROTILIO,K.S.WILSON,M.BOLOGNESI REVDAT 6 06-NOV-24 1XSO 1 REMARK SEQADV LINK REVDAT 5 14-AUG-19 1XSO 1 REMARK REVDAT 4 17-JUL-19 1XSO 1 REMARK REVDAT 3 24-FEB-09 1XSO 1 VERSN REVDAT 2 03-MAY-99 1XSO 1 JRNL REVDAT 1 10-JUL-95 1XSO 0 JRNL AUTH K.DJINOVIC CARUGO,A.BATTISTONI,M.T.CARRI,F.POLTICELLI, JRNL AUTH 2 A.DESIDERI,G.ROTILIO,A.CODA,K.S.WILSON,M.BOLOGNESI JRNL TITL THREE-DIMENSIONAL STRUCTURE OF XENOPUS LAEVIS CU,ZN JRNL TITL 2 SUPEROXIDE DISMUTASE B DETERMINED BY X-RAY CRYSTALLOGRAPHY JRNL TITL 3 AT 1.5 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 52 176 1996 JRNL REFN ISSN 0907-4449 JRNL PMID 15299740 JRNL DOI 10.1107/S0907444995007608 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.BORDO,K.DJINOVIC,K.M.BOLOGNESI REMARK 1 TITL CONSERVED PATTERNS IN THE CU,ZN SUPEROXIDE DISMUTASE FAMILY REMARK 1 REF J.MOL.BIOL. V. 238 366 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.DJINOVIC CARUGO,K.F.POLTICELLI,A.DESIDERI,G.ROTILIO, REMARK 1 AUTH 2 K.S.WILSON,M.BOLOGNESI REMARK 1 TITL CRYSTALLOGRAPHIC STUDY OF AZIDE-INHIBITED BOVINE CU,ZN REMARK 1 TITL 2 SUPEROXIDE DISMUTASE REMARK 1 REF J.MOL.BIOL. V. 240 179 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.DJINOVIC CARUGO,K.A.BATTISTONI,M.T.CARRI,F.POLTICELLI, REMARK 1 AUTH 2 A.DESIDERI,G.ROTILIO,A.CODA,M.BOLOGNESI REMARK 1 TITL CRYSTAL STRUCTURE OF THE CYANIDE-INHIBITED XENOPUS LAEVIS REMARK 1 TITL 2 CU,ZN SUPEROXIDE DISMUTASE AT 98 K REMARK 1 REF FEBS LETT. V. 349 93 1994 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.DJINOVIC CARUGO,K.C.COLLYER,A.CODA,M.T.CARRI,A.BATTISTONI, REMARK 1 AUTH 2 G.BOTARO,F.POLTICELLI,A.DESIDERI,M.BOLOGNESI REMARK 1 TITL CRYSTALLISATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 RECOMBINANT XENOPUS LAEVIS CU,ZN SUPEROXIDE DISMUTASE B REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 194 1008 1993 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 5 REMARK 1 AUTH K.DJINOVIC,G.GATTI,L.ANTOLINI,G.PELOSI,A.DESIDERI,M.FALCONI, REMARK 1 AUTH 2 F.MARMOCCHI,G.ROTILIO,M.BOLOGNESI REMARK 1 TITL CRYSTAL STRUCTURE OF YEAST CU,ZN SUPEROXIDE DISMUTASE REMARK 1 REF J.MOL.BIOL. V. 225 791 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-93 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.104 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUE 24 IS IN POOR ELECTRON DENSITY. REMARK 4 REMARK 4 1XSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49209 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.980 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.38000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.38000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX RESIDUES RESIDUES RMSD REMARK 300 M1 A 2 .. A 151 B 2 .. B 151 0.279 REMARK 300 REMARK 300 CALCULATED FOR C-ALPHA ATOMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 3 NZ REMARK 480 LYS A 15 CD NZ REMARK 480 GLN A 23 OE1 NE2 REMARK 480 ASP A 24 CB REMARK 480 GLU A 25 CB CG CD OE1 OE2 REMARK 480 GLU A 34 CD OE1 OE2 REMARK 480 MET A 56 CG REMARK 480 GLN A 94 CG REMARK 480 LYS A 105 CD REMARK 480 LYS A 120 CE REMARK 480 LYS A 126 CD CE NZ REMARK 480 LYS B 3 NZ REMARK 480 ASP B 13 OD2 REMARK 480 LYS B 15 CE NZ REMARK 480 GLN B 23 CG CD OE1 NE2 REMARK 480 ASP B 24 CG OD1 OD2 REMARK 480 GLU B 30 OE2 REMARK 480 LYS B 32 NZ REMARK 480 ASN B 66 ND2 REMARK 480 LYS B 96 CD CE NZ REMARK 480 LYS B 105 CD CE NZ REMARK 480 LYS B 120 NZ REMARK 480 LYS B 126 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 167 O HOH A 263 2.09 REMARK 500 O HOH B 222 O HOH B 298 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 6 CB CYS A 6 SG -0.103 REMARK 500 CYS A 6 CB CYS A 6 SG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 6 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 CYS A 6 N - CA - CB ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 6 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 CYS B 6 N - CA - CB ANGL. DEV. = -19.0 DEGREES REMARK 500 LEU B 8 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 ASN B 51 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 VAL B 92 N - CA - CB ANGL. DEV. = 16.0 DEGREES REMARK 500 SER B 100 N - CA - CB ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 SER B 150 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -138.67 56.46 REMARK 500 ASN A 53 51.00 -115.30 REMARK 500 ASP B 24 -136.64 50.71 REMARK 500 ASN B 63 58.35 -145.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 1 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 ND1 REMARK 620 2 HIS A 46 NE2 139.7 REMARK 620 3 HIS A 61 NE2 87.1 90.5 REMARK 620 4 HIS A 118 NE2 90.6 99.9 166.3 REMARK 620 5 HOH A 167 O 118.8 100.6 82.0 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 152 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HIS A 69 ND1 109.9 REMARK 620 3 HIS A 78 ND1 109.4 121.8 REMARK 620 4 ASP A 81 OD1 105.0 96.7 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 ND1 REMARK 620 2 HIS B 46 NE2 137.8 REMARK 620 3 HIS B 61 NE2 86.4 92.8 REMARK 620 4 HIS B 118 NE2 91.8 97.8 166.1 REMARK 620 5 HOH B 154 O 89.0 133.2 86.7 79.5 REMARK 620 6 HOH B 159 O 126.0 95.3 80.7 89.2 38.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 ND1 REMARK 620 2 HIS B 69 ND1 109.4 REMARK 620 3 HIS B 78 ND1 110.5 122.4 REMARK 620 4 ASP B 81 OD1 104.0 97.2 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: B REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 153 DBREF 1XSO A 2 151 UNP P15107 SODC2_XENLA 1 150 DBREF 1XSO B 2 151 UNP P15107 SODC2_XENLA 1 150 SEQADV 1XSO SER A 60 UNP P15107 PRO 60 CONFLICT SEQADV 1XSO SER B 60 UNP P15107 PRO 60 CONFLICT SEQRES 1 A 150 VAL LYS ALA VAL CYS VAL LEU ALA GLY SER GLY ASP VAL SEQRES 2 A 150 LYS GLY VAL VAL HIS PHE GLU GLN GLN ASP GLU GLY ALA SEQRES 3 A 150 VAL SER VAL GLU GLY LYS ILE GLU GLY LEU THR ASP GLY SEQRES 4 A 150 LEU HIS GLY PHE HIS ILE HIS VAL PHE GLY ASP ASN THR SEQRES 5 A 150 ASN GLY CYS MET SER ALA GLY SER HIS PHE ASN PRO GLU SEQRES 6 A 150 ASN LYS ASN HIS GLY ALA PRO GLY ASP THR ASP ARG HIS SEQRES 7 A 150 VAL GLY ASP LEU GLY ASN VAL THR ALA GLU GLY GLY VAL SEQRES 8 A 150 ALA GLN PHE LYS ILE THR ASP SER LEU ILE SER LEU LYS SEQRES 9 A 150 GLY PRO ASN SER ILE ILE GLY ARG THR ALA VAL VAL HIS SEQRES 10 A 150 GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY ASN ASP GLU SEQRES 11 A 150 SER LEU LYS THR GLY ASN ALA GLY GLY ARG LEU ALA CYS SEQRES 12 A 150 GLY VAL ILE GLY TYR SER PRO SEQRES 1 B 150 VAL LYS ALA VAL CYS VAL LEU ALA GLY SER GLY ASP VAL SEQRES 2 B 150 LYS GLY VAL VAL HIS PHE GLU GLN GLN ASP GLU GLY ALA SEQRES 3 B 150 VAL SER VAL GLU GLY LYS ILE GLU GLY LEU THR ASP GLY SEQRES 4 B 150 LEU HIS GLY PHE HIS ILE HIS VAL PHE GLY ASP ASN THR SEQRES 5 B 150 ASN GLY CYS MET SER ALA GLY SER HIS PHE ASN PRO GLU SEQRES 6 B 150 ASN LYS ASN HIS GLY ALA PRO GLY ASP THR ASP ARG HIS SEQRES 7 B 150 VAL GLY ASP LEU GLY ASN VAL THR ALA GLU GLY GLY VAL SEQRES 8 B 150 ALA GLN PHE LYS ILE THR ASP SER LEU ILE SER LEU LYS SEQRES 9 B 150 GLY PRO ASN SER ILE ILE GLY ARG THR ALA VAL VAL HIS SEQRES 10 B 150 GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY ASN ASP GLU SEQRES 11 B 150 SER LEU LYS THR GLY ASN ALA GLY GLY ARG LEU ALA CYS SEQRES 12 B 150 GLY VAL ILE GLY TYR SER PRO HET CU A 1 1 HET ZN A 152 1 HET CU B 152 1 HET ZN B 153 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *350(H2 O) HELIX 1 1 GLY A 54 ALA A 58 5 5 HELIX 2 2 GLU A 131 THR A 135 5 5 HELIX 3 3 GLY B 54 SER B 57 5 4 HELIX 4 4 SER B 132 THR B 135 1 4 SHEET 1 A 4 LYS A 3 LEU A 8 0 SHEET 2 A 4 LYS A 15 GLN A 22 -1 N PHE A 20 O ALA A 4 SHEET 3 A 4 VAL A 27 GLU A 34 -1 N GLU A 34 O LYS A 15 SHEET 4 A 4 VAL A 92 ASP A 99 -1 N ASP A 99 O VAL A 27 SHEET 1 B 2 GLY A 39 GLY A 42 0 SHEET 2 B 2 ASN A 84 ALA A 87 -1 N ALA A 87 O GLY A 39 SHEET 1 C 3 PHE A 43 HIS A 46 0 SHEET 2 C 3 THR A 114 HIS A 118 -1 N VAL A 116 O HIS A 44 SHEET 3 C 3 ARG A 141 VAL A 146 -1 N GLY A 145 O ALA A 115 SHEET 1 D 4 LYS B 3 LEU B 8 0 SHEET 2 D 4 LYS B 15 GLU B 21 -1 N PHE B 20 O ALA B 4 SHEET 3 D 4 VAL B 27 GLU B 34 -1 N GLU B 34 O LYS B 15 SHEET 4 D 4 VAL B 92 ASP B 99 -1 N ASP B 99 O VAL B 27 SHEET 1 E 2 GLY B 39 GLY B 42 0 SHEET 2 E 2 ASN B 84 ALA B 87 -1 N ALA B 87 O GLY B 39 SHEET 1 F 3 PHE B 43 HIS B 46 0 SHEET 2 F 3 THR B 114 HIS B 118 -1 N VAL B 116 O HIS B 44 SHEET 3 F 3 ARG B 141 VAL B 146 -1 N GLY B 145 O ALA B 115 SSBOND 1 CYS A 55 CYS A 144 1555 1555 2.02 SSBOND 2 CYS B 55 CYS B 144 1555 1555 2.04 LINK CU CU A 1 ND1 HIS A 44 1555 1555 2.00 LINK CU CU A 1 NE2 HIS A 46 1555 1555 2.21 LINK CU CU A 1 NE2 HIS A 61 1555 1555 2.08 LINK CU CU A 1 NE2 HIS A 118 1555 1555 2.11 LINK CU CU A 1 O HOH A 167 1555 1555 2.26 LINK ND1 HIS A 61 ZN ZN A 152 1555 1555 2.04 LINK ND1 HIS A 69 ZN ZN A 152 1555 1555 2.07 LINK ND1 HIS A 78 ZN ZN A 152 1555 1555 2.06 LINK OD1 ASP A 81 ZN ZN A 152 1555 1555 2.00 LINK ND1 HIS B 44 CU CU B 152 1555 1555 2.02 LINK NE2 HIS B 46 CU CU B 152 1555 1555 2.20 LINK NE2 HIS B 61 CU CU B 152 1555 1555 2.08 LINK ND1 HIS B 61 ZN ZN B 153 1555 1555 2.02 LINK ND1 HIS B 69 ZN ZN B 153 1555 1555 2.04 LINK ND1 HIS B 78 ZN ZN B 153 1555 1555 2.00 LINK OD1 ASP B 81 ZN ZN B 153 1555 1555 1.97 LINK NE2 HIS B 118 CU CU B 152 1555 1555 2.07 LINK CU CU B 152 O HOH B 154 1555 1555 2.49 LINK CU CU B 152 O HOH B 159 1555 1555 2.40 SITE 1 A 9 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 A 9 HIS A 69 HIS A 78 ASP A 81 CU A 1 SITE 3 A 9 ZN A 152 SITE 1 B 9 HIS B 44 HIS B 46 HIS B 61 HIS B 118 SITE 2 B 9 HIS B 69 HIS B 78 ASP B 81 CU B 152 SITE 3 B 9 ZN B 153 SITE 1 AC1 5 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC1 5 HOH A 167 SITE 1 AC2 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC3 6 HIS B 44 HIS B 46 HIS B 61 HIS B 118 SITE 2 AC3 6 HOH B 154 HOH B 159 SITE 1 AC4 4 HIS B 61 HIS B 69 HIS B 78 ASP B 81 CRYST1 73.450 68.940 58.760 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017018 0.00000 MTRIX1 1 0.987830 -0.010290 -0.155220 1.43777 1 MTRIX2 1 -0.008360 -0.999880 0.013070 33.15571 1 MTRIX3 1 -0.155330 -0.011610 -0.987790 17.07902 1