HEADER BIOSYNTHETIC PROTEIN 26-OCT-04 1XUB TITLE STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN PHZF FROM TITLE 2 PSEUDOMONAS FLUORESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN PHZF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHENAZINE BIOSYNTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG,P.BAYER, AUTHOR 2 P.JANNING,L.S.THOMASHOW,D.V.MAVRODI REVDAT 5 25-OCT-23 1XUB 1 REMARK REVDAT 4 10-NOV-21 1XUB 1 REMARK SEQADV REVDAT 3 24-FEB-09 1XUB 1 VERSN REVDAT 2 23-NOV-04 1XUB 1 JRNL REVDAT 1 09-NOV-04 1XUB 0 JRNL AUTH W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG, JRNL AUTH 2 P.BAYER,P.JANNING,L.S.THOMASHOW,D.V.MAVRODI JRNL TITL STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN JRNL TITL 2 PHZF FROM PSEUDOMONAS FLUORESCENS JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 16431 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15545603 JRNL DOI 10.1073/PNAS.0407371101 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 61287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2274 ; 0.035 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2091 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3111 ; 2.714 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4838 ; 3.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.717 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.027 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 482 ; 0.069 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 419 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2371 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1263 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.263 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.385 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.293 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1453 ; 2.651 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2348 ; 3.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ; 5.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 763 ; 7.409 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2274 ; 2.816 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 359 ;10.969 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2214 ; 6.670 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 278 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3438 22.1671 16.2598 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0046 REMARK 3 T33: 0.0030 T12: -0.0025 REMARK 3 T13: -0.0022 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: -0.0153 L22: 0.1378 REMARK 3 L33: 0.0410 L12: -0.0424 REMARK 3 L13: 0.0073 L23: -0.0654 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0032 S13: -0.0007 REMARK 3 S21: -0.0102 S22: 0.0063 S23: 0.0085 REMARK 3 S31: 0.0037 S32: -0.0055 S33: -0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.007 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22900 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 1U1V REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1U1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% (W/V) PEG 3350, 0.1M NA CITRATE, REMARK 280 0.2M (NH4)2 SULFATE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.94867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.47433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.47433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.94867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -28.06400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 48.60827 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.47433 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1021 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 1 O HOH A 1358 1.93 REMARK 500 CG GLN A 232 O HOH A 1016 2.07 REMARK 500 O HOH A 1061 O HOH A 1285 2.12 REMARK 500 CE MET A 98 O HOH A 1242 2.13 REMARK 500 NE2 GLN A 232 O HOH A 1304 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1002 O HOH A 1313 5565 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 33 CB GLN A 33 CG -0.180 REMARK 500 ARG A 53 NE ARG A 53 CZ 0.083 REMARK 500 ARG A 53 CZ ARG A 53 NH1 0.114 REMARK 500 ASN A 67 CB ASN A 67 CG -0.154 REMARK 500 MET A 98 CG MET A 98 SD 0.185 REMARK 500 PHE A 103 CE2 PHE A 103 CD2 0.131 REMARK 500 GLU A 106 CG GLU A 106 CD 0.090 REMARK 500 ARG A 107 NE ARG A 107 CZ -0.087 REMARK 500 ASP A 164 CB ASP A 164 CG 0.132 REMARK 500 VAL A 205 CB VAL A 205 CG1 -0.152 REMARK 500 GLN A 232 CG GLN A 232 CD 0.247 REMARK 500 GLN A 232 CD GLN A 232 OE1 0.245 REMARK 500 GLU A 235 CD GLU A 235 OE2 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 39 CG - CD - NE ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 88 OD1 - CG - OD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 164 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 181 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 37.82 -144.10 REMARK 500 ASN A 151 27.52 -140.56 REMARK 500 GLN A 258 80.20 -151.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 2 0.10 SIDE CHAIN REMARK 500 HIS A 221 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U1V RELATED DB: PDB REMARK 900 WT SULFATE COMPLEX REMARK 900 RELATED ID: 1U1W RELATED DB: PDB REMARK 900 WT 3-HYDROXYANTHRANILIC ACID COMPLEX REMARK 900 RELATED ID: 1U1X RELATED DB: PDB REMARK 900 WT TRANS-2,3-DIHYDRO-3-HYDROXYANTHRANILIC ACID COMPLEX DBREF 1XUB A 1 278 UNP Q51792 PHZF_PSEFL 1 278 SEQADV 1XUB MET A -19 UNP Q51792 EXPRESSION TAG SEQADV 1XUB GLY A -18 UNP Q51792 EXPRESSION TAG SEQADV 1XUB SER A -17 UNP Q51792 EXPRESSION TAG SEQADV 1XUB SER A -16 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -15 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -14 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -13 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -12 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -11 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A -10 UNP Q51792 EXPRESSION TAG SEQADV 1XUB SER A -9 UNP Q51792 EXPRESSION TAG SEQADV 1XUB SER A -8 UNP Q51792 EXPRESSION TAG SEQADV 1XUB GLY A -7 UNP Q51792 EXPRESSION TAG SEQADV 1XUB LEU A -6 UNP Q51792 EXPRESSION TAG SEQADV 1XUB VAL A -5 UNP Q51792 EXPRESSION TAG SEQADV 1XUB PRO A -4 UNP Q51792 EXPRESSION TAG SEQADV 1XUB ARG A -3 UNP Q51792 EXPRESSION TAG SEQADV 1XUB GLY A -2 UNP Q51792 EXPRESSION TAG SEQADV 1XUB SER A -1 UNP Q51792 EXPRESSION TAG SEQADV 1XUB HIS A 0 UNP Q51792 EXPRESSION TAG SEQADV 1XUB ALA A 74 UNP Q51792 HIS 74 ENGINEERED MUTATION SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET HIS ASN TYR VAL ILE SEQRES 3 A 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 A 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 A 298 GLN MET GLN ARG ILE ALA ARG GLU MET ASN LEU SER GLU SEQRES 6 A 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 A 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 A 298 ALA GLY ALA PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 A 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 A 298 MET GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 A 298 SER VAL ILE ALA ALA SER MET ASP GLN PRO ILE PRO THR SEQRES 12 A 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 A 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 A 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 A 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 A 298 LEU SER ASN PHE HIS ASP MET ALA ILE ASN CYS PHE ALA SEQRES 17 A 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MET PHE SER PRO SEQRES 18 A 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 A 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 A 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 A 298 GLU ILE GLY ARG PRO SER LEU MET PHE ALA LYS ALA GLU SEQRES 22 A 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 A 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU HET SO4 A1001 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *359(H2 O) HELIX 1 1 ASP A 25 LEU A 29 5 5 HELIX 2 2 PRO A 30 ASN A 42 1 13 HELIX 3 3 ALA A 72 ALA A 85 1 14 HELIX 4 4 ARG A 129 GLY A 138 1 10 HELIX 5 5 SER A 162 LEU A 169 1 8 HELIX 6 6 ASP A 172 SER A 177 1 6 HELIX 7 7 SER A 200 GLY A 204 5 5 HELIX 8 8 THR A 211 HIS A 225 1 15 HELIX 9 9 VAL A 240 GLY A 243 5 4 SHEET 1 A13 GLU A 68 LEU A 69 0 SHEET 2 A13 ALA A 58 PHE A 63 -1 N ILE A 62 O LEU A 69 SHEET 3 A13 SER A 46 LEU A 50 -1 N LEU A 50 O LEU A 59 SHEET 4 A13 ASN A 18 PHE A 23 1 N ALA A 21 O THR A 47 SHEET 5 A13 HIS A 2 ALA A 9 -1 N VAL A 5 O VAL A 22 SHEET 6 A13 GLN A 258 ILE A 276 -1 O VAL A 269 N ASP A 8 SHEET 7 A13 SER A 246 ARG A 255 -1 N GLU A 253 O ARG A 261 SHEET 8 A13 VAL A 234 GLN A 238 -1 N ILE A 236 O MET A 248 SHEET 9 A13 ARG A 193 PHE A 199 1 N TRP A 194 O GLU A 235 SHEET 10 A13 ALA A 183 ALA A 190 -1 N ALA A 188 O ARG A 195 SHEET 11 A13 ARG A 154 GLY A 159 1 N VAL A 156 O ASN A 185 SHEET 12 A13 GLU A 147 HIS A 150 -1 N TYR A 149 O HIS A 155 SHEET 13 A13 THR A 123 ALA A 126 -1 N THR A 125 O ILE A 148 SHEET 1 B13 GLU A 68 LEU A 69 0 SHEET 2 B13 ALA A 58 PHE A 63 -1 N ILE A 62 O LEU A 69 SHEET 3 B13 ARG A 91 THR A 96 1 O GLU A 95 N ALA A 58 SHEET 4 B13 GLY A 99 GLN A 108 -1 O ILE A 101 N LEU A 94 SHEET 5 B13 SER A 111 ASP A 118 -1 O ALA A 114 N GLU A 106 SHEET 6 B13 GLN A 258 ILE A 276 -1 O VAL A 264 N MET A 117 SHEET 7 B13 SER A 246 ARG A 255 -1 N GLU A 253 O ARG A 261 SHEET 8 B13 VAL A 234 GLN A 238 -1 N ILE A 236 O MET A 248 SHEET 9 B13 ARG A 193 PHE A 199 1 N TRP A 194 O GLU A 235 SHEET 10 B13 ALA A 183 ALA A 190 -1 N ALA A 188 O ARG A 195 SHEET 11 B13 ARG A 154 GLY A 159 1 N VAL A 156 O ASN A 185 SHEET 12 B13 GLU A 147 HIS A 150 -1 N TYR A 149 O HIS A 155 SHEET 13 B13 THR A 123 ALA A 126 -1 N THR A 125 O ILE A 148 SITE 1 AC1 11 ALA A 72 GLY A 73 ALA A 74 PRO A 75 SITE 2 AC1 11 THR A 211 GLY A 212 SER A 213 HOH A1063 SITE 3 AC1 11 HOH A1126 HOH A1214 HOH A1218 CRYST1 56.128 56.128 154.423 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017816 0.010286 0.000000 0.00000 SCALE2 0.000000 0.020573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006476 0.00000