data_1XV4 # _entry.id 1XV4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XV4 pdb_00001xv4 10.2210/pdb1xv4/pdb RCSB RCSB030798 ? ? WWPDB D_1000030798 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-06-24 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_entity_src_syn 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_assembly_prop 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref 7 4 'Structure model' struct_ref_seq 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' database_2 11 5 'Structure model' pdbx_entry_details 12 5 'Structure model' pdbx_modification_feature 13 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.details' 2 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 4 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 5 4 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 6 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XV4 _pdbx_database_status.recvd_initial_deposition_date 2004-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1XV7 _pdbx_database_related.details 'peptide Lf11 in DPC micelles' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Japelj, B.' 1 'Pristovsek, P.' 2 'Majerle, A.' 3 'Jerala, R.' 4 # _citation.id primary _citation.title 'Structural origin of endotoxin neutralization and antimicrobial activity of a lactoferrin-based peptide' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 16955 _citation.page_last 16961 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15687491 _citation.pdbx_database_id_DOI 10.1074/jbc.M500266200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Japelj, B.' 1 ? primary 'Pristovsek, P.' 2 ? primary 'Majerle, A.' 3 ? primary 'Jerala, R.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'lactoferrin-based synthetic peptide FQWQRNIRKVR' _entity.formula_weight 1532.817 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FQWQRNIRKVR(NH2)' _entity_poly.pdbx_seq_one_letter_code_can FQWQRNIRKVRX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 GLN n 1 3 TRP n 1 4 GLN n 1 5 ARG n 1 6 ASN n 1 7 ILE n 1 8 ARG n 1 9 LYS n 1 10 VAL n 1 11 ARG n 1 12 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 NH2 12 12 12 NH2 NH2 A . n # _exptl.entry_id 1XV4 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1XV4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XV4 _struct.title 'Solution structure of antimicrobial and endotoxin-neutralizing peptide Lf11 in SDS micelles' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XV4 _struct_keywords.pdbx_keywords 'METAL TRANSPORT' _struct_keywords.text 'loop, hydrophobic core, METAL TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XV4 _struct_ref.pdbx_db_accession 1XV4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1XV4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1XV4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 110 ? 1 MORE 1 ? 1 'SSA (A^2)' 1950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 11 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 12 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 11 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 12 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 12 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id ARG _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 11 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 12 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id ARG _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 11 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id ARG _pdbx_modification_feature.ref_pcm_id 8 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 12 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 12' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ARG _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 11 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ARG _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 11 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_entry_details.entry_id 1XV4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.54 120.30 3.24 0.50 N 2 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.65 120.30 3.35 0.50 N 3 1 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.28 120.30 3.98 0.50 N 4 2 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.70 120.30 3.40 0.50 N 5 2 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.65 120.30 3.35 0.50 N 6 2 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.26 120.30 3.96 0.50 N 7 3 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.56 120.30 3.26 0.50 N 8 3 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.90 120.30 3.60 0.50 N 9 3 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.31 120.30 4.01 0.50 N 10 4 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.71 120.30 3.41 0.50 N 11 4 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.62 120.30 3.32 0.50 N 12 4 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.32 120.30 4.02 0.50 N 13 5 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.62 120.30 3.32 0.50 N 14 5 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.77 120.30 3.47 0.50 N 15 5 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.41 120.30 4.11 0.50 N 16 6 CD1 A TRP 3 ? ? NE1 A TRP 3 ? ? CE2 A TRP 3 ? ? 103.56 109.00 -5.44 0.90 N 17 6 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.50 120.30 3.20 0.50 N 18 6 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.68 120.30 3.38 0.50 N 19 6 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.40 120.30 4.10 0.50 N 20 7 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.55 120.30 3.25 0.50 N 21 7 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.69 120.30 3.39 0.50 N 22 7 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 124.28 120.30 3.98 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 4 ? ? -84.22 46.06 2 1 ASN A 6 ? ? -152.43 65.43 3 1 ARG A 8 ? ? 174.88 -63.98 4 1 LYS A 9 ? ? -134.69 -111.53 5 1 VAL A 10 ? ? -130.35 -51.47 6 2 GLN A 2 ? ? 76.24 67.48 7 2 TRP A 3 ? ? -122.74 -118.09 8 2 GLN A 4 ? ? -150.81 27.20 9 2 ARG A 5 ? ? 46.46 27.04 10 2 ARG A 8 ? ? -160.06 -59.43 11 3 GLN A 2 ? ? -133.87 -57.26 12 3 TRP A 3 ? ? -44.07 153.12 13 3 ASN A 6 ? ? -161.22 76.34 14 3 ARG A 8 ? ? -178.62 -44.39 15 4 GLN A 4 ? ? -78.58 37.55 16 4 ASN A 6 ? ? -153.68 61.68 17 4 ILE A 7 ? ? -97.21 -69.08 18 4 ARG A 8 ? ? -158.84 -56.06 19 5 ARG A 5 ? ? 173.86 60.87 20 5 ASN A 6 ? ? -156.15 48.64 21 5 LYS A 9 ? ? -149.40 -90.57 22 5 VAL A 10 ? ? -95.14 -125.74 23 6 TRP A 3 ? ? -72.88 42.76 24 6 ARG A 5 ? ? 56.08 -123.50 25 6 ASN A 6 ? ? 55.94 2.43 26 6 ILE A 7 ? ? -138.07 -55.02 27 6 LYS A 9 ? ? -76.15 -80.22 28 7 GLN A 4 ? ? 49.22 19.45 29 7 ARG A 5 ? ? 54.69 80.53 30 7 ASN A 6 ? ? -145.79 -57.72 31 7 VAL A 10 ? ? 57.67 -156.99 # _pdbx_nmr_ensemble.entry_id 1XV4 _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XV4 _pdbx_nmr_representative.conformer_id 4 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM Lf11; 20mM sodium phosphate buffer (pH 5.5), 92% H20, 8% D20' _pdbx_nmr_sample_details.solvent_system '92% H20, 8% D20' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type '2D NOESY' # _pdbx_nmr_refine.entry_id 1XV4 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal DYANA 1.5 'structure solution' 'Guntert,P., Braun,W., Wuthrich,K' 1 DYANA 1.5 refinement 'Guntert,P., Braun,W., Wuthrich,K' 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 GLN N N N N 45 GLN CA C N S 46 GLN C C N N 47 GLN O O N N 48 GLN CB C N N 49 GLN CG C N N 50 GLN CD C N N 51 GLN OE1 O N N 52 GLN NE2 N N N 53 GLN OXT O N N 54 GLN H H N N 55 GLN H2 H N N 56 GLN HA H N N 57 GLN HB2 H N N 58 GLN HB3 H N N 59 GLN HG2 H N N 60 GLN HG3 H N N 61 GLN HE21 H N N 62 GLN HE22 H N N 63 GLN HXT H N N 64 ILE N N N N 65 ILE CA C N S 66 ILE C C N N 67 ILE O O N N 68 ILE CB C N S 69 ILE CG1 C N N 70 ILE CG2 C N N 71 ILE CD1 C N N 72 ILE OXT O N N 73 ILE H H N N 74 ILE H2 H N N 75 ILE HA H N N 76 ILE HB H N N 77 ILE HG12 H N N 78 ILE HG13 H N N 79 ILE HG21 H N N 80 ILE HG22 H N N 81 ILE HG23 H N N 82 ILE HD11 H N N 83 ILE HD12 H N N 84 ILE HD13 H N N 85 ILE HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 NH2 N N N N 112 NH2 HN1 H N N 113 NH2 HN2 H N N 114 PHE N N N N 115 PHE CA C N S 116 PHE C C N N 117 PHE O O N N 118 PHE CB C N N 119 PHE CG C Y N 120 PHE CD1 C Y N 121 PHE CD2 C Y N 122 PHE CE1 C Y N 123 PHE CE2 C Y N 124 PHE CZ C Y N 125 PHE OXT O N N 126 PHE H H N N 127 PHE H2 H N N 128 PHE HA H N N 129 PHE HB2 H N N 130 PHE HB3 H N N 131 PHE HD1 H N N 132 PHE HD2 H N N 133 PHE HE1 H N N 134 PHE HE2 H N N 135 PHE HZ H N N 136 PHE HXT H N N 137 TRP N N N N 138 TRP CA C N S 139 TRP C C N N 140 TRP O O N N 141 TRP CB C N N 142 TRP CG C Y N 143 TRP CD1 C Y N 144 TRP CD2 C Y N 145 TRP NE1 N Y N 146 TRP CE2 C Y N 147 TRP CE3 C Y N 148 TRP CZ2 C Y N 149 TRP CZ3 C Y N 150 TRP CH2 C Y N 151 TRP OXT O N N 152 TRP H H N N 153 TRP H2 H N N 154 TRP HA H N N 155 TRP HB2 H N N 156 TRP HB3 H N N 157 TRP HD1 H N N 158 TRP HE1 H N N 159 TRP HE3 H N N 160 TRP HZ2 H N N 161 TRP HZ3 H N N 162 TRP HH2 H N N 163 TRP HXT H N N 164 VAL N N N N 165 VAL CA C N S 166 VAL C C N N 167 VAL O O N N 168 VAL CB C N N 169 VAL CG1 C N N 170 VAL CG2 C N N 171 VAL OXT O N N 172 VAL H H N N 173 VAL H2 H N N 174 VAL HA H N N 175 VAL HB H N N 176 VAL HG11 H N N 177 VAL HG12 H N N 178 VAL HG13 H N N 179 VAL HG21 H N N 180 VAL HG22 H N N 181 VAL HG23 H N N 182 VAL HXT H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 GLN N CA sing N N 43 GLN N H sing N N 44 GLN N H2 sing N N 45 GLN CA C sing N N 46 GLN CA CB sing N N 47 GLN CA HA sing N N 48 GLN C O doub N N 49 GLN C OXT sing N N 50 GLN CB CG sing N N 51 GLN CB HB2 sing N N 52 GLN CB HB3 sing N N 53 GLN CG CD sing N N 54 GLN CG HG2 sing N N 55 GLN CG HG3 sing N N 56 GLN CD OE1 doub N N 57 GLN CD NE2 sing N N 58 GLN NE2 HE21 sing N N 59 GLN NE2 HE22 sing N N 60 GLN OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 NH2 N HN1 sing N N 107 NH2 N HN2 sing N N 108 PHE N CA sing N N 109 PHE N H sing N N 110 PHE N H2 sing N N 111 PHE CA C sing N N 112 PHE CA CB sing N N 113 PHE CA HA sing N N 114 PHE C O doub N N 115 PHE C OXT sing N N 116 PHE CB CG sing N N 117 PHE CB HB2 sing N N 118 PHE CB HB3 sing N N 119 PHE CG CD1 doub Y N 120 PHE CG CD2 sing Y N 121 PHE CD1 CE1 sing Y N 122 PHE CD1 HD1 sing N N 123 PHE CD2 CE2 doub Y N 124 PHE CD2 HD2 sing N N 125 PHE CE1 CZ doub Y N 126 PHE CE1 HE1 sing N N 127 PHE CE2 CZ sing Y N 128 PHE CE2 HE2 sing N N 129 PHE CZ HZ sing N N 130 PHE OXT HXT sing N N 131 TRP N CA sing N N 132 TRP N H sing N N 133 TRP N H2 sing N N 134 TRP CA C sing N N 135 TRP CA CB sing N N 136 TRP CA HA sing N N 137 TRP C O doub N N 138 TRP C OXT sing N N 139 TRP CB CG sing N N 140 TRP CB HB2 sing N N 141 TRP CB HB3 sing N N 142 TRP CG CD1 doub Y N 143 TRP CG CD2 sing Y N 144 TRP CD1 NE1 sing Y N 145 TRP CD1 HD1 sing N N 146 TRP CD2 CE2 doub Y N 147 TRP CD2 CE3 sing Y N 148 TRP NE1 CE2 sing Y N 149 TRP NE1 HE1 sing N N 150 TRP CE2 CZ2 sing Y N 151 TRP CE3 CZ3 doub Y N 152 TRP CE3 HE3 sing N N 153 TRP CZ2 CH2 doub Y N 154 TRP CZ2 HZ2 sing N N 155 TRP CZ3 CH2 sing Y N 156 TRP CZ3 HZ3 sing N N 157 TRP CH2 HH2 sing N N 158 TRP OXT HXT sing N N 159 VAL N CA sing N N 160 VAL N H sing N N 161 VAL N H2 sing N N 162 VAL CA C sing N N 163 VAL CA CB sing N N 164 VAL CA HA sing N N 165 VAL C O doub N N 166 VAL C OXT sing N N 167 VAL CB CG1 sing N N 168 VAL CB CG2 sing N N 169 VAL CB HB sing N N 170 VAL CG1 HG11 sing N N 171 VAL CG1 HG12 sing N N 172 VAL CG1 HG13 sing N N 173 VAL CG2 HG21 sing N N 174 VAL CG2 HG22 sing N N 175 VAL CG2 HG23 sing N N 176 VAL OXT HXT sing N N 177 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1XV4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_