HEADER METHYLTRANSFERASE 20-JUL-96 1XVA TITLE METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GNMT, S-ADENOSYL-L-METHIONINE\: GLYCINE METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS METHYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FU,Y.HU,K.KONISHI,Y.TAKATA,H.OGAWA,T.GOMI,M.FUJIOKA,F.TAKUSAGAWA REVDAT 4 14-FEB-24 1XVA 1 REMARK REVDAT 3 13-JUL-11 1XVA 1 VERSN REVDAT 2 24-FEB-09 1XVA 1 VERSN REVDAT 1 27-JAN-97 1XVA 0 JRNL AUTH Z.FU,Y.HU,K.KONISHI,Y.TAKATA,H.OGAWA,T.GOMI,M.FUJIOKA, JRNL AUTH 2 F.TAKUSAGAWA JRNL TITL CRYSTAL STRUCTURE OF GLYCINE N-METHYLTRANSFERASE FROM RAT JRNL TITL 2 LIVER. JRNL REF BIOCHEMISTRY V. 35 11985 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8810903 JRNL DOI 10.1021/BI961068N REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 33778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 7 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : KUAVST, KUMDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33778 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 87.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 87.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO SUBUNITS ARE IN AN ASYMMETRIC UNIT. THE TETRAMERIC REMARK 300 ENZYME CAN BE GENERATED BY THE FOLLOWING CRYSTALLOGRAPHIC REMARK 300 SYMMETRY OPERATION: 2-X, 1-Y, Z, REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 172.80000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 175.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 85 O GLU B 15 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 142 NE2 HIS A 142 CD2 -0.083 REMARK 500 HIS A 264 NE2 HIS A 264 CD2 -0.074 REMARK 500 HIS B 214 NE2 HIS B 214 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 7 CA - CB - CG2 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLN A 20 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 TRP A 30 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 30 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP A 30 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP A 47 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 47 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 TRP A 47 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 VAL A 75 CG1 - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 TRP A 99 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 99 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 110 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 117 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 117 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR A 179 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASN A 210 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 ASN A 210 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 PHE A 235 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 GLY A 268 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 TYR A 283 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 THR B 7 CA - CB - CG2 ANGL. DEV. = 10.5 DEGREES REMARK 500 TYR B 21 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP B 30 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP B 30 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP B 47 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP B 47 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 53 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET B 90 CA - CB - CG ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP B 99 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 99 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 102 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 TRP B 110 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP B 110 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP B 117 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP B 117 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 136 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG B 165 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 175 CB - CG - CD ANGL. DEV. = -19.3 DEGREES REMARK 500 ARG B 175 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR B 177 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 229 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 239 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 35.55 -91.26 REMARK 500 THR A 37 51.48 -149.71 REMARK 500 ARG A 38 42.83 -141.99 REMARK 500 HIS A 58 -43.47 -137.81 REMARK 500 ASN A 138 33.95 72.53 REMARK 500 GLN A 150 48.30 -93.56 REMARK 500 ASN A 210 73.55 32.50 REMARK 500 MET A 215 143.29 -170.89 REMARK 500 ARG A 229 -90.51 -70.08 REMARK 500 ASP A 269 -85.26 -86.34 REMARK 500 ASP B 23 33.61 -140.13 REMARK 500 THR B 37 82.95 -67.58 REMARK 500 ARG B 38 -58.79 -133.13 REMARK 500 HIS B 58 -52.15 -137.88 REMARK 500 PRO B 125 107.72 -56.87 REMARK 500 GLN B 150 37.60 -93.15 REMARK 500 ASN B 210 -146.08 48.60 REMARK 500 ARG B 229 -92.72 -78.67 REMARK 500 ASP B 269 -99.14 -88.03 REMARK 500 THR B 291 72.83 -112.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 16 ILE A 17 -135.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 5 0.07 SIDE CHAIN REMARK 500 TYR A 44 0.09 SIDE CHAIN REMARK 500 ARG A 59 0.08 SIDE CHAIN REMARK 500 ARG A 165 0.09 SIDE CHAIN REMARK 500 TYR A 193 0.12 SIDE CHAIN REMARK 500 TYR A 194 0.15 SIDE CHAIN REMARK 500 ARG A 239 0.09 SIDE CHAIN REMARK 500 TYR B 5 0.13 SIDE CHAIN REMARK 500 ARG B 28 0.10 SIDE CHAIN REMARK 500 ARG B 175 0.14 SIDE CHAIN REMARK 500 TYR B 177 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 293 DBREF 1XVA A 1 292 UNP P13255 GNMT_RAT 1 292 DBREF 1XVA B 1 292 UNP P13255 GNMT_RAT 1 292 SEQRES 1 A 292 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 A 292 ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 A 292 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 A 292 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 A 292 ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA CYS SEQRES 6 A 292 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 A 292 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 A 292 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS GLU SEQRES 9 A 292 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 A 292 LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY PHE SEQRES 11 A 292 ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS LEU SEQRES 12 A 292 PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU ALA SEQRES 13 A 292 LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY LEU SEQRES 14 A 292 LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SER SEQRES 15 A 292 THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR LYS SEQRES 16 A 292 SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU THR SEQRES 17 A 292 VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR THR SEQRES 18 A 292 VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO GLY SEQRES 19 A 292 PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS LEU SEQRES 20 A 292 ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY GLY SEQRES 21 A 292 ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO TYR SEQRES 22 A 292 ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE HIS SEQRES 23 A 292 VAL LEU LYS LYS THR GLY SEQRES 1 B 292 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 B 292 ALA GLU GLY ILE PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 B 292 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 B 292 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 B 292 ARG GLN HIS GLY CYS HIS ARG VAL LEU ASP VAL ALA CYS SEQRES 6 B 292 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 B 292 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 B 292 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG LYS GLU SEQRES 9 B 292 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 B 292 LEU THR LEU ASP LYS ASP VAL PRO ALA GLY ASP GLY PHE SEQRES 11 B 292 ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA HIS LEU SEQRES 12 B 292 PRO ASP SER LYS GLY ASP GLN SER GLU HIS ARG LEU ALA SEQRES 13 B 292 LEU LYS ASN ILE ALA SER MET VAL ARG PRO GLY GLY LEU SEQRES 14 B 292 LEU VAL ILE ASP HIS ARG ASN TYR ASP TYR ILE LEU SER SEQRES 15 B 292 THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR TYR LYS SEQRES 16 B 292 SER ASP LEU THR LYS ASP ILE THR THR SER VAL LEU THR SEQRES 17 B 292 VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP TYR THR SEQRES 18 B 292 VAL GLN VAL PRO GLY ALA GLY ARG ASP GLY ALA PRO GLY SEQRES 19 B 292 PHE SER LYS PHE ARG LEU SER TYR TYR PRO HIS CYS LEU SEQRES 20 B 292 ALA SER PHE THR GLU LEU VAL GLN GLU ALA PHE GLY GLY SEQRES 21 B 292 ARG CYS GLN HIS SER VAL LEU GLY ASP PHE LYS PRO TYR SEQRES 22 B 292 ARG PRO GLY GLN ALA TYR VAL PRO CYS TYR PHE ILE HIS SEQRES 23 B 292 VAL LEU LYS LYS THR GLY HET ACT A 294 4 HET SAM A 293 27 HET ACT B 294 4 HET SAM B 293 27 HETNAM ACT ACETATE ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 SAM 2(C15 H22 N6 O5 S) FORMUL 7 HOH *94(H2 O) HELIX 1 1 GLU A 25 GLY A 35 1 11 HELIX 2 2 ALA A 42 GLN A 54 1 13 HELIX 3 3 VAL A 69 GLU A 76 1 8 HELIX 4 4 ASP A 88 ASN A 100 1 13 HELIX 5 5 PRO A 105 LYS A 109 1 5 HELIX 6 6 TRP A 117 ASP A 123 5 7 HELIX 7 7 PHE A 140 HIS A 142 5 3 HELIX 8 8 SER A 151 MET A 163 1 13 HELIX 9 9 TYR A 177 THR A 183 1 7 HELIX 10 10 LEU A 247 PHE A 258 1 12 HELIX 11 11 GLU B 25 ILE B 34 1 10 HELIX 12 12 ALA B 42 GLN B 54 1 13 HELIX 13 13 VAL B 69 GLU B 76 1 8 HELIX 14 14 ASP B 88 ASN B 100 1 13 HELIX 15 15 PRO B 105 ASP B 108 1 4 HELIX 16 16 TRP B 117 ASP B 123 5 7 HELIX 17 17 PHE B 140 HIS B 142 5 3 HELIX 18 18 SER B 151 MET B 163 1 13 HELIX 19 19 TYR B 177 THR B 183 1 7 HELIX 20 20 LEU B 247 ALA B 257 1 11 SHEET 1 A 7 CYS A 262 LEU A 267 0 SHEET 2 A 7 TYR A 283 LYS A 290 -1 N LYS A 289 O GLN A 263 SHEET 3 A 7 LEU A 169 ARG A 175 -1 N HIS A 174 O PHE A 284 SHEET 4 A 7 ALA A 132 CYS A 135 1 N VAL A 133 O LEU A 169 SHEET 5 A 7 ARG A 59 ASP A 62 1 N LEU A 61 O ALA A 132 SHEET 6 A 7 SER A 80 ASP A 85 1 N SER A 80 O VAL A 60 SHEET 7 A 7 VAL A 111 GLU A 114 1 N VAL A 111 O SER A 83 SHEET 1 B 3 GLY A 234 TYR A 242 0 SHEET 2 B 3 ALA A 213 VAL A 224 -1 N VAL A 224 O GLY A 234 SHEET 3 B 3 LYS A 200 THR A 208 -1 N LEU A 207 O HIS A 214 SHEET 1 C 7 CYS B 262 LEU B 267 0 SHEET 2 C 7 TYR B 283 LYS B 290 -1 N LYS B 289 O GLN B 263 SHEET 3 C 7 LEU B 169 ARG B 175 -1 N HIS B 174 O PHE B 284 SHEET 4 C 7 ALA B 132 CYS B 135 1 N VAL B 133 O LEU B 169 SHEET 5 C 7 ARG B 59 ASP B 62 1 N LEU B 61 O ALA B 132 SHEET 6 C 7 SER B 80 ASP B 85 1 N SER B 80 O VAL B 60 SHEET 7 C 7 VAL B 111 GLU B 114 1 N VAL B 111 O SER B 83 SHEET 1 D 3 GLY B 234 TYR B 242 0 SHEET 2 D 3 LYS B 212 VAL B 224 -1 N VAL B 224 O GLY B 234 SHEET 3 D 3 LYS B 200 VAL B 209 -1 N VAL B 209 O LYS B 212 SITE 1 AC1 5 TRP A 30 LEU A 240 SAM A 293 ALA B 13 SITE 2 AC1 5 ALA B 14 SITE 1 AC2 7 ALA A 13 ALA A 14 GLU A 15 TRP B 30 SITE 2 AC2 7 ILE B 34 LEU B 240 SAM B 293 SITE 1 AC3 17 TYR A 33 ALA A 64 VAL A 69 ASP A 70 SITE 2 AC3 17 LEU A 136 GLY A 137 SER A 139 HIS A 142 SITE 3 AC3 17 ARG A 175 PRO A 187 GLY A 189 ILE A 202 SITE 4 AC3 17 TYR A 242 ACT A 294 HOH A 343 HOH A 353 SITE 5 AC3 17 GLU B 15 SITE 1 AC4 19 GLU A 15 TYR B 33 ALA B 64 ASP B 70 SITE 2 AC4 19 LEU B 136 GLY B 137 ASN B 138 SER B 139 SITE 3 AC4 19 HIS B 142 ARG B 175 PRO B 187 TYR B 194 SITE 4 AC4 19 ILE B 202 TYR B 220 TYR B 242 TYR B 283 SITE 5 AC4 19 ACT B 294 HOH B 311 HOH B 314 CRYST1 86.400 175.700 45.500 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021978 0.00000