HEADER HYDROLASE 28-OCT-04 1XVI TITLE CRYSTAL STRUCTURE OF YEDP, PHOSPHATASE-LIKE DOMAIN PROTEIN FROM TITLE 2 ESCHERICHIA COLI K12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP, YEDP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEDP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 KEYWDS HYPOTHETICAL PROTEIN, CONSERVED PROTEIN, PHOPHATASE-LIKE DOMAIN, KEYWDS 2 PREDICTED HYDROLASE, SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE (S6PP), KEYWDS 3 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, MCSG, KEYWDS 4 MIDWEST CENTER FOR STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,M.CYMBOROWSKI,T.SKARINA,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 14-FEB-24 1XVI 1 REMARK SEQADV REVDAT 3 24-FEB-09 1XVI 1 VERSN REVDAT 2 18-JAN-05 1XVI 1 AUTHOR REMARK REVDAT 1 14-DEC-04 1XVI 0 JRNL AUTH Y.KIM,A.JOACHIMIAK,M.CYMBOROWSKI,T.SKARINA,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF YEDP, PHOSPHATASE-LIKE DOMAIN PROTEIN JRNL TITL 2 FROM ESCHERICHIA COLI K12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 26247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3865 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5267 ; 1.408 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;37.604 ;24.972 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;17.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2916 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1725 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 359 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2414 ; 0.913 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3801 ; 1.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 1.864 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1452 ; 2.950 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-04; 30-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-BM; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98016; 0.98032 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3; SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 74.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.98750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 ARG A 236 REMARK 465 GLU A 237 REMARK 465 GLY A 238 REMARK 465 VAL A 239 REMARK 465 HIS A 240 REMARK 465 LEU A 241 REMARK 465 HIS A 242 REMARK 465 ASP A 243 REMARK 465 GLU A 244 REMARK 465 ASP A 245 REMARK 465 PRO A 246 REMARK 465 ALA A 247 REMARK 465 ARG A 248 REMARK 465 VAL A 249 REMARK 465 TRP A 250 REMARK 465 ARG A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 ARG A 254 REMARK 465 GLU A 255 REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 TRP A 260 REMARK 465 ARG A 261 REMARK 465 GLU A 262 REMARK 465 GLY A 263 REMARK 465 LEU A 264 REMARK 465 ASP A 265 REMARK 465 HIS A 266 REMARK 465 PHE A 267 REMARK 465 PHE A 268 REMARK 465 SER A 269 REMARK 465 ALA A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 272 REMARK 465 SER A 273 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 235 REMARK 465 ARG B 236 REMARK 465 GLU B 237 REMARK 465 GLY B 238 REMARK 465 VAL B 239 REMARK 465 HIS B 240 REMARK 465 LEU B 241 REMARK 465 HIS B 242 REMARK 465 ASP B 243 REMARK 465 GLU B 244 REMARK 465 ASP B 245 REMARK 465 PRO B 246 REMARK 465 ALA B 247 REMARK 465 ARG B 248 REMARK 465 VAL B 249 REMARK 465 TRP B 250 REMARK 465 ARG B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 ARG B 254 REMARK 465 GLU B 255 REMARK 465 GLY B 256 REMARK 465 PRO B 257 REMARK 465 GLU B 258 REMARK 465 GLY B 259 REMARK 465 TRP B 260 REMARK 465 ARG B 261 REMARK 465 GLU B 262 REMARK 465 GLY B 263 REMARK 465 LEU B 264 REMARK 465 ASP B 265 REMARK 465 HIS B 266 REMARK 465 PHE B 267 REMARK 465 PHE B 268 REMARK 465 SER B 269 REMARK 465 ALA B 270 REMARK 465 ARG B 271 REMARK 465 GLY B 272 REMARK 465 SER B 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY B 16 O HOH B 698 2.11 REMARK 500 NH1 ARG B 37 O GLN B 64 2.13 REMARK 500 O HOH A 657 O HOH A 787 2.13 REMARK 500 O LEU A 234 O HOH A 726 2.13 REMARK 500 OD1 ASP A 25 OH TYR A 56 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 69.39 -110.23 REMARK 500 TYR A 24 -126.32 -103.95 REMARK 500 VAL A 41 79.72 -118.71 REMARK 500 ALA A 145 37.64 -147.23 REMARK 500 ASP B 13 71.29 -116.14 REMARK 500 TYR B 24 -127.87 -98.68 REMARK 500 ALA B 145 31.57 -149.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 23 TYR A 24 -147.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 AUTHORS STATE THAT 1PE, PG4 AND PGE ARE FROM PEG 4000. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5010 RELATED DB: TARGETDB DBREF 1XVI A 1 271 UNP P76329 MPGP_ECOLI 1 271 DBREF 1XVI B 1 271 UNP P76329 MPGP_ECOLI 1 271 SEQADV 1XVI GLY A -1 UNP P76329 CLONING ARTIFACT SEQADV 1XVI HIS A 0 UNP P76329 CLONING ARTIFACT SEQADV 1XVI GLY A 272 UNP P76329 CLONING ARTIFACT SEQADV 1XVI SER A 273 UNP P76329 CLONING ARTIFACT SEQADV 1XVI GLY B -1 UNP P76329 CLONING ARTIFACT SEQADV 1XVI HIS B 0 UNP P76329 CLONING ARTIFACT SEQADV 1XVI GLY B 272 UNP P76329 CLONING ARTIFACT SEQADV 1XVI SER B 273 UNP P76329 CLONING ARTIFACT SEQRES 1 A 275 GLY HIS MET PHE SER ILE GLN GLN PRO LEU LEU VAL PHE SEQRES 2 A 275 SER ASP LEU ASP GLY THR LEU LEU ASP SER HIS SER TYR SEQRES 3 A 275 ASP TRP GLN PRO ALA ALA PRO TRP LEU THR ARG LEU ARG SEQRES 4 A 275 GLU ALA ASN VAL PRO VAL ILE LEU CYS SER SER LYS THR SEQRES 5 A 275 SER ALA GLU MET LEU TYR LEU GLN LYS THR LEU GLY LEU SEQRES 6 A 275 GLN GLY LEU PRO LEU ILE ALA GLU ASN GLY ALA VAL ILE SEQRES 7 A 275 GLN LEU ALA GLU GLN TRP GLN GLU ILE ASP GLY PHE PRO SEQRES 8 A 275 ARG ILE ILE SER GLY ILE SER HIS GLY GLU ILE SER LEU SEQRES 9 A 275 VAL LEU ASN THR LEU ARG GLU LYS GLU HIS PHE LYS PHE SEQRES 10 A 275 THR THR PHE ASP ASP VAL ASP ASP ALA THR ILE ALA GLU SEQRES 11 A 275 TRP THR GLY LEU SER ARG SER GLN ALA ALA LEU THR GLN SEQRES 12 A 275 LEU HIS GLU ALA SER VAL THR LEU ILE TRP ARG ASP SER SEQRES 13 A 275 ASP GLU ARG MET ALA GLN PHE THR ALA ARG LEU ASN GLU SEQRES 14 A 275 LEU GLY LEU GLN PHE MET GLN GLY ALA ARG PHE TRP HIS SEQRES 15 A 275 VAL LEU ASP ALA SER ALA GLY LYS ASP GLN ALA ALA ASN SEQRES 16 A 275 TRP ILE ILE ALA THR TYR GLN GLN LEU SER GLY LYS ARG SEQRES 17 A 275 PRO THR THR LEU GLY LEU GLY ASP GLY PRO ASN ASP ALA SEQRES 18 A 275 PRO LEU LEU GLU VAL MET ASP TYR ALA VAL ILE VAL LYS SEQRES 19 A 275 GLY LEU ASN ARG GLU GLY VAL HIS LEU HIS ASP GLU ASP SEQRES 20 A 275 PRO ALA ARG VAL TRP ARG THR GLN ARG GLU GLY PRO GLU SEQRES 21 A 275 GLY TRP ARG GLU GLY LEU ASP HIS PHE PHE SER ALA ARG SEQRES 22 A 275 GLY SER SEQRES 1 B 275 GLY HIS MET PHE SER ILE GLN GLN PRO LEU LEU VAL PHE SEQRES 2 B 275 SER ASP LEU ASP GLY THR LEU LEU ASP SER HIS SER TYR SEQRES 3 B 275 ASP TRP GLN PRO ALA ALA PRO TRP LEU THR ARG LEU ARG SEQRES 4 B 275 GLU ALA ASN VAL PRO VAL ILE LEU CYS SER SER LYS THR SEQRES 5 B 275 SER ALA GLU MET LEU TYR LEU GLN LYS THR LEU GLY LEU SEQRES 6 B 275 GLN GLY LEU PRO LEU ILE ALA GLU ASN GLY ALA VAL ILE SEQRES 7 B 275 GLN LEU ALA GLU GLN TRP GLN GLU ILE ASP GLY PHE PRO SEQRES 8 B 275 ARG ILE ILE SER GLY ILE SER HIS GLY GLU ILE SER LEU SEQRES 9 B 275 VAL LEU ASN THR LEU ARG GLU LYS GLU HIS PHE LYS PHE SEQRES 10 B 275 THR THR PHE ASP ASP VAL ASP ASP ALA THR ILE ALA GLU SEQRES 11 B 275 TRP THR GLY LEU SER ARG SER GLN ALA ALA LEU THR GLN SEQRES 12 B 275 LEU HIS GLU ALA SER VAL THR LEU ILE TRP ARG ASP SER SEQRES 13 B 275 ASP GLU ARG MET ALA GLN PHE THR ALA ARG LEU ASN GLU SEQRES 14 B 275 LEU GLY LEU GLN PHE MET GLN GLY ALA ARG PHE TRP HIS SEQRES 15 B 275 VAL LEU ASP ALA SER ALA GLY LYS ASP GLN ALA ALA ASN SEQRES 16 B 275 TRP ILE ILE ALA THR TYR GLN GLN LEU SER GLY LYS ARG SEQRES 17 B 275 PRO THR THR LEU GLY LEU GLY ASP GLY PRO ASN ASP ALA SEQRES 18 B 275 PRO LEU LEU GLU VAL MET ASP TYR ALA VAL ILE VAL LYS SEQRES 19 B 275 GLY LEU ASN ARG GLU GLY VAL HIS LEU HIS ASP GLU ASP SEQRES 20 B 275 PRO ALA ARG VAL TRP ARG THR GLN ARG GLU GLY PRO GLU SEQRES 21 B 275 GLY TRP ARG GLU GLY LEU ASP HIS PHE PHE SER ALA ARG SEQRES 22 B 275 GLY SER HET SO4 A 501 5 HET SO4 A 502 5 HET 1PE A 601 16 HET PG4 A 602 13 HET PGE A 603 10 HET SO4 B 503 5 HETNAM SO4 SULFATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 1PE C10 H22 O6 FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PGE C6 H14 O4 FORMUL 9 HOH *388(H2 O) HELIX 1 1 ALA A 29 ALA A 39 1 11 HELIX 2 2 THR A 50 LEU A 61 1 12 HELIX 3 3 GLU A 71 GLY A 73 5 3 HELIX 4 4 SER A 96 HIS A 112 1 17 HELIX 5 5 ASP A 119 VAL A 121 5 3 HELIX 6 6 ASP A 122 GLY A 131 1 10 HELIX 7 7 SER A 133 LEU A 142 1 10 HELIX 8 8 SER A 154 LEU A 168 1 15 HELIX 9 9 GLY A 187 GLY A 204 1 18 HELIX 10 10 GLY A 215 ASN A 217 5 3 HELIX 11 11 ASP A 218 VAL A 224 1 7 HELIX 12 12 ALA B 29 ALA B 39 1 11 HELIX 13 13 THR B 50 LEU B 61 1 12 HELIX 14 14 GLU B 71 GLY B 73 5 3 HELIX 15 15 SER B 96 HIS B 112 1 17 HELIX 16 16 ASP B 119 VAL B 121 5 3 HELIX 17 17 ASP B 122 GLY B 131 1 10 HELIX 18 18 SER B 133 GLN B 141 1 9 HELIX 19 19 SER B 154 LEU B 168 1 15 HELIX 20 20 GLY B 187 GLY B 204 1 18 HELIX 21 21 GLY B 215 ASN B 217 5 3 HELIX 22 22 ASP B 218 VAL B 224 1 7 SHEET 1 A 7 ARG A 90 ILE A 92 0 SHEET 2 A 7 VAL A 75 GLN A 77 -1 N ILE A 76 O ILE A 91 SHEET 3 A 7 LEU A 68 ALA A 70 -1 N ALA A 70 O VAL A 75 SHEET 4 A 7 VAL A 43 CYS A 46 1 N LEU A 45 O ILE A 69 SHEET 5 A 7 LEU A 8 ASP A 13 1 N VAL A 10 O ILE A 44 SHEET 6 A 7 THR A 208 GLY A 213 1 O LEU A 210 N PHE A 11 SHEET 7 A 7 TYR A 227 ILE A 230 1 O TYR A 227 N GLY A 211 SHEET 1 B 4 PHE A 115 THR A 117 0 SHEET 2 B 4 VAL A 147 TRP A 151 -1 O ILE A 150 N THR A 116 SHEET 3 B 4 TRP A 179 ASP A 183 -1 O VAL A 181 N VAL A 147 SHEET 4 B 4 LEU A 170 GLN A 174 -1 N GLN A 171 O LEU A 182 SHEET 1 C 7 ARG B 90 ILE B 92 0 SHEET 2 C 7 VAL B 75 GLN B 77 -1 N ILE B 76 O ILE B 91 SHEET 3 C 7 LEU B 68 ALA B 70 -1 N ALA B 70 O VAL B 75 SHEET 4 C 7 VAL B 43 CYS B 46 1 N LEU B 45 O ILE B 69 SHEET 5 C 7 LEU B 8 ASP B 13 1 N VAL B 10 O ILE B 44 SHEET 6 C 7 THR B 208 GLY B 213 1 O LEU B 210 N PHE B 11 SHEET 7 C 7 TYR B 227 ILE B 230 1 O TYR B 227 N GLY B 211 SHEET 1 D 4 PHE B 115 THR B 117 0 SHEET 2 D 4 SER B 146 TRP B 151 -1 O ILE B 150 N THR B 116 SHEET 3 D 4 TRP B 179 ASP B 183 -1 O VAL B 181 N VAL B 147 SHEET 4 D 4 LEU B 170 GLN B 174 -1 N MET B 173 O HIS B 180 CISPEP 1 PHE A 88 PRO A 89 0 3.10 CISPEP 2 PHE B 88 PRO B 89 0 -5.81 SITE 1 AC1 5 GLY A 175 ALA A 176 ARG A 177 PHE A 178 SITE 2 AC1 5 HIS A 180 SITE 1 AC2 4 ILE A 76 GLN A 190 TRP A 194 HOH A 787 SITE 1 AC3 6 SER B 48 GLY B 175 ALA B 176 ARG B 177 SITE 2 AC3 6 PHE B 178 HIS B 180 SITE 1 AC4 7 LEU A 36 LEU A 212 TYR A 227 PG4 A 602 SITE 2 AC4 7 HOH A 668 HOH A 740 HOH A 762 SITE 1 AC5 5 ALA A 29 TRP A 32 1PE A 601 PGE A 603 SITE 2 AC5 5 HOH A 761 SITE 1 AC6 1 PG4 A 602 CRYST1 54.783 79.975 75.471 90.00 99.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018254 0.000000 0.003074 0.00000 SCALE2 0.000000 0.012504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013437 0.00000