HEADER DNA BINDING PROTEIN 28-OCT-04 1XVP TITLE CRYSTAL STRUCTURE OF CAR/RXR HETERODIMER BOUND WITH SRC1 PEPTIDE, TITLE 2 FATTY ACID AND CITCO COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: LBD DOMAIN; COMPND 5 SYNONYM: CONSTITUTIVE ANDROSTANE RECEPTOR, CAR, ORPHAN NUCLEAR COMPND 6 RECEPTOR MB67; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR1I3; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: LBD DOMAIN; COMPND 12 SYNONYM: RETINOID X RECEPTOR ALPHA; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1 ISOFORM 1; COMPND 16 CHAIN: E, F, G, H; COMPND 17 FRAGMENT: SYNTHETIC PEPTIDE-13 RESIDUES; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1I3, CAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RXRA, NR2B1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS CAR, RXR, CITCO, SRC1, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.X.XU,M.H.LAMBERT,B.B.WISELY,E.N.WARREN,E.E.WEINERT,G.M.WAITT, AUTHOR 2 J.D.WILLIAMS,L.B.MOORE,T.M.WILLSON,J.T.MOORE REVDAT 4 14-FEB-24 1XVP 1 REMARK SEQADV REVDAT 3 30-NOV-16 1XVP 1 REMARK SOURCE VERSN REVDAT 2 24-FEB-09 1XVP 1 VERSN REVDAT 1 28-DEC-04 1XVP 0 JRNL AUTH R.X.XU,M.H.LAMBERT,B.B.WISELY,E.N.WARREN,E.E.WEINERT, JRNL AUTH 2 G.M.WAITT,J.D.WILLIAMS,J.L.COLLINS,L.B.MOORE,T.M.WILLSON, JRNL AUTH 3 J.T.MOORE JRNL TITL A STRUCTURAL BASIS FOR CONSTITUTIVE ACTIVITY IN THE HUMAN JRNL TITL 2 CAR/RXRALPHA HETERODIMER. JRNL REF MOL.CELL V. 16 919 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15610735 JRNL DOI 10.1016/J.MOLCEL.2004.11.042 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 53979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3122 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COORDINATES FROM TWINNED DATA REMARK 3 RESTRAINED INDIVIDUAL B-REFINEMENT WITH THE TWINNING OPERATOR= - REMARK 3 K,-H,-L TWINNING FRACTION= 0.401 REMARK 4 REMARK 4 1XVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LISIUM SULPHATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.45000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.72500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.72500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 141.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 GLU E 628 REMARK 465 ARG E 629 REMARK 465 GLY E 640 REMARK 465 GLU F 685 REMARK 465 GLY G 640 REMARK 465 GLY H 697 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 631 CG CD CE NZ REMARK 470 LYS F 688 CG CD CE NZ REMARK 470 LYS G 631 CG CD CE NZ REMARK 470 LYS H 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 409 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO C 412 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO C 458 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 PRO D 147 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 231 107.35 -52.56 REMARK 500 VAL A 242 -77.04 -51.88 REMARK 500 GLU A 243 135.67 -36.51 REMARK 500 MET A 254 -9.06 -48.42 REMARK 500 SER A 260 152.98 -42.89 REMARK 500 PRO A 264 -83.20 -6.12 REMARK 500 ARG A 285 -6.43 -50.55 REMARK 500 ALA A 303 32.62 -98.75 REMARK 500 ASN A 306 -74.35 -61.14 REMARK 500 ALA A 337 -73.53 -65.51 REMARK 500 VAL A 342 35.45 -92.22 REMARK 500 LEU A 353 -77.40 -116.56 REMARK 500 GLN A 361 71.03 48.25 REMARK 500 ARG A 393 5.57 -68.86 REMARK 500 HIS A 406 -76.56 -92.73 REMARK 500 ILE A 442 -66.67 -158.03 REMARK 500 THR A 449 -90.51 -36.42 REMARK 500 GLU A 456 70.20 -152.50 REMARK 500 ALA A 457 108.67 -164.90 REMARK 500 SER B 107 172.00 -36.46 REMARK 500 HIS B 124 -23.93 -145.16 REMARK 500 HIS B 140 1.60 -68.75 REMARK 500 HIS B 145 43.96 -83.07 REMARK 500 GLN B 146 133.34 161.06 REMARK 500 PRO B 147 -150.94 -72.74 REMARK 500 PHE B 161 -72.53 -49.07 REMARK 500 PRO B 186 -178.68 -69.87 REMARK 500 CYS B 219 66.86 -108.35 REMARK 500 GLN B 253 72.70 42.34 REMARK 500 GLN B 255 164.81 -46.29 REMARK 500 LEU B 267 -70.16 -65.37 REMARK 500 GLN B 277 45.63 -100.41 REMARK 500 GLN B 299 101.95 -52.08 REMARK 500 ARG B 302 59.56 -102.43 REMARK 500 PHE B 307 41.47 -99.21 REMARK 500 PRO C 231 107.50 -57.33 REMARK 500 ALA C 241 30.64 -73.63 REMARK 500 VAL C 242 -40.70 -140.00 REMARK 500 ASN C 253 -148.24 -64.60 REMARK 500 PRO C 258 -2.96 -59.85 REMARK 500 PRO C 261 3.61 -66.51 REMARK 500 ARG C 285 16.51 -60.96 REMARK 500 HIS C 288 -18.72 87.36 REMARK 500 LEU C 292 154.17 -30.18 REMARK 500 ALA C 327 15.65 -63.31 REMARK 500 LEU C 353 -62.37 -97.08 REMARK 500 ASP C 359 3.10 -60.67 REMARK 500 MET C 360 47.34 -155.75 REMARK 500 GLN C 361 82.82 2.13 REMARK 500 ASN C 385 79.43 -109.20 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F15 C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F15 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CID D 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XV9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CAR/RXR HETERODIMER BOUND WITH SRC1 PEPTIDE, REMARK 900 FATTY ACID AND 5B-PREGNANEDIONE DBREF 1XVP B 103 348 UNP Q14994 NR1I3_HUMAN 103 352 DBREF 1XVP D 103 348 UNP Q14994 NR1I3_HUMAN 103 352 DBREF 1XVP A 227 462 UNP P19793 RXRA_HUMAN 227 462 DBREF 1XVP C 227 462 UNP P19793 RXRA_HUMAN 227 462 DBREF 1XVP E 628 640 GB 22538455 NP_003734 685 697 DBREF 1XVP F 685 697 GB 22538455 NP_003734 685 697 DBREF 1XVP G 628 640 GB 22538455 NP_003734 685 697 DBREF 1XVP H 685 697 GB 22538455 NP_003734 685 697 SEQADV 1XVP B UNP Q14994 VAL 232 DELETION SEQADV 1XVP B UNP Q14994 SER 233 DELETION SEQADV 1XVP B UNP Q14994 PRO 234 DELETION SEQADV 1XVP B UNP Q14994 THR 235 DELETION SEQADV 1XVP D UNP Q14994 VAL 232 DELETION SEQADV 1XVP D UNP Q14994 SER 233 DELETION SEQADV 1XVP D UNP Q14994 PRO 234 DELETION SEQADV 1XVP D UNP Q14994 THR 235 DELETION SEQRES 1 A 236 ASN GLU ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU SEQRES 2 A 236 LEU ALA VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA SEQRES 3 A 236 ASN MET GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL SEQRES 4 A 236 THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR SEQRES 5 A 236 LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU SEQRES 6 A 236 LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY SEQRES 7 A 236 TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER SEQRES 8 A 236 ILE ALA VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU SEQRES 9 A 236 HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY SEQRES 10 A 236 ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS SEQRES 11 A 236 MET ARG ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS SEQRES 12 A 236 LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY SEQRES 13 A 236 LEU SER ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS SEQRES 14 A 236 VAL TYR ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR SEQRES 15 A 236 PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG SEQRES 16 A 236 LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU SEQRES 17 A 236 HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE SEQRES 18 A 236 ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN SEQRES 19 A 236 MET THR SEQRES 1 B 246 PRO VAL GLN LEU SER LYS GLU GLN GLU GLU LEU ILE ARG SEQRES 2 B 246 THR LEU LEU GLY ALA HIS THR ARG HIS MET GLY THR MET SEQRES 3 B 246 PHE GLU GLN PHE VAL GLN PHE ARG PRO PRO ALA HIS LEU SEQRES 4 B 246 PHE ILE HIS HIS GLN PRO LEU PRO THR LEU ALA PRO VAL SEQRES 5 B 246 LEU PRO LEU VAL THR HIS PHE ALA ASP ILE ASN THR PHE SEQRES 6 B 246 MET VAL LEU GLN VAL ILE LYS PHE THR LYS ASP LEU PRO SEQRES 7 B 246 VAL PHE ARG SER LEU PRO ILE GLU ASP GLN ILE SER LEU SEQRES 8 B 246 LEU LYS GLY ALA ALA VAL GLU ILE CYS HIS ILE VAL LEU SEQRES 9 B 246 ASN THR THR PHE CYS LEU GLN THR GLN ASN PHE LEU CYS SEQRES 10 B 246 GLY PRO LEU ARG TYR THR ILE GLU ASP GLY ALA ARG VAL SEQRES 11 B 246 GLY PHE GLN VAL GLU PHE LEU GLU LEU LEU PHE HIS PHE SEQRES 12 B 246 HIS GLY THR LEU ARG LYS LEU GLN LEU GLN GLU PRO GLU SEQRES 13 B 246 TYR VAL LEU LEU ALA ALA MET ALA LEU PHE SER PRO ASP SEQRES 14 B 246 ARG PRO GLY VAL THR GLN ARG ASP GLU ILE ASP GLN LEU SEQRES 15 B 246 GLN GLU GLU MET ALA LEU THR LEU GLN SER TYR ILE LYS SEQRES 16 B 246 GLY GLN GLN ARG ARG PRO ARG ASP ARG PHE LEU TYR ALA SEQRES 17 B 246 LYS LEU LEU GLY LEU LEU ALA GLU LEU ARG SER ILE ASN SEQRES 18 B 246 GLU ALA TYR GLY TYR GLN ILE GLN HIS ILE GLN GLY LEU SEQRES 19 B 246 SER ALA MET MET PRO LEU LEU GLN GLU ILE CYS SER SEQRES 1 C 236 ASN GLU ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU SEQRES 2 C 236 LEU ALA VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA SEQRES 3 C 236 ASN MET GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL SEQRES 4 C 236 THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR SEQRES 5 C 236 LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU SEQRES 6 C 236 LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY SEQRES 7 C 236 TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER SEQRES 8 C 236 ILE ALA VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU SEQRES 9 C 236 HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY SEQRES 10 C 236 ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS SEQRES 11 C 236 MET ARG ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS SEQRES 12 C 236 LEU ARG ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY SEQRES 13 C 236 LEU SER ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS SEQRES 14 C 236 VAL TYR ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR SEQRES 15 C 236 PRO GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG SEQRES 16 C 236 LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU SEQRES 17 C 236 HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE SEQRES 18 C 236 ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN SEQRES 19 C 236 MET THR SEQRES 1 D 246 PRO VAL GLN LEU SER LYS GLU GLN GLU GLU LEU ILE ARG SEQRES 2 D 246 THR LEU LEU GLY ALA HIS THR ARG HIS MET GLY THR MET SEQRES 3 D 246 PHE GLU GLN PHE VAL GLN PHE ARG PRO PRO ALA HIS LEU SEQRES 4 D 246 PHE ILE HIS HIS GLN PRO LEU PRO THR LEU ALA PRO VAL SEQRES 5 D 246 LEU PRO LEU VAL THR HIS PHE ALA ASP ILE ASN THR PHE SEQRES 6 D 246 MET VAL LEU GLN VAL ILE LYS PHE THR LYS ASP LEU PRO SEQRES 7 D 246 VAL PHE ARG SER LEU PRO ILE GLU ASP GLN ILE SER LEU SEQRES 8 D 246 LEU LYS GLY ALA ALA VAL GLU ILE CYS HIS ILE VAL LEU SEQRES 9 D 246 ASN THR THR PHE CYS LEU GLN THR GLN ASN PHE LEU CYS SEQRES 10 D 246 GLY PRO LEU ARG TYR THR ILE GLU ASP GLY ALA ARG VAL SEQRES 11 D 246 GLY PHE GLN VAL GLU PHE LEU GLU LEU LEU PHE HIS PHE SEQRES 12 D 246 HIS GLY THR LEU ARG LYS LEU GLN LEU GLN GLU PRO GLU SEQRES 13 D 246 TYR VAL LEU LEU ALA ALA MET ALA LEU PHE SER PRO ASP SEQRES 14 D 246 ARG PRO GLY VAL THR GLN ARG ASP GLU ILE ASP GLN LEU SEQRES 15 D 246 GLN GLU GLU MET ALA LEU THR LEU GLN SER TYR ILE LYS SEQRES 16 D 246 GLY GLN GLN ARG ARG PRO ARG ASP ARG PHE LEU TYR ALA SEQRES 17 D 246 LYS LEU LEU GLY LEU LEU ALA GLU LEU ARG SER ILE ASN SEQRES 18 D 246 GLU ALA TYR GLY TYR GLN ILE GLN HIS ILE GLN GLY LEU SEQRES 19 D 246 SER ALA MET MET PRO LEU LEU GLN GLU ILE CYS SER SEQRES 1 E 13 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 1 F 13 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 1 G 13 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 1 H 13 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY HET F15 A1002 46 HET F15 C1001 46 HET CID D1003 54 HETNAM F15 PENTADECANOIC ACID HETNAM CID 6-(4-CHLOROPHENYL)IMIDAZO[2,1-B][1,3]THIAZOLE-5- HETNAM 2 CID CARBALDEHYDE O-(3,4-DICHLOROBENZYL)OXIME FORMUL 9 F15 2(C15 H30 O2) FORMUL 11 CID C19 H12 CL3 N3 O S FORMUL 12 HOH *98(H2 O) HELIX 1 1 PRO A 231 GLU A 243 1 13 HELIX 2 2 ASP A 263 ARG A 285 1 23 HELIX 3 3 PRO A 293 ALA A 303 1 11 HELIX 4 4 GLY A 304 SER A 317 1 14 HELIX 5 5 ILE A 318 VAL A 320 5 3 HELIX 6 6 ARG A 334 SER A 339 1 6 HELIX 7 7 VAL A 342 LEU A 353 1 12 HELIX 8 8 LEU A 353 MET A 360 1 8 HELIX 9 9 ASP A 363 PHE A 376 1 14 HELIX 10 10 ASN A 385 LYS A 407 1 23 HELIX 11 11 GLY A 413 LEU A 420 1 8 HELIX 12 12 ARG A 421 LEU A 441 1 21 HELIX 13 13 ASP A 448 MET A 454 1 7 HELIX 14 14 SER B 107 ARG B 123 1 17 HELIX 15 15 THR B 127 ARG B 136 5 10 HELIX 16 16 PRO B 138 PHE B 142 5 5 HELIX 17 17 VAL B 154 LYS B 177 1 24 HELIX 18 18 LEU B 179 LEU B 185 1 7 HELIX 19 19 PRO B 186 ASN B 207 1 22 HELIX 20 20 THR B 225 GLY B 233 1 9 HELIX 21 21 GLN B 235 LEU B 252 1 18 HELIX 22 22 GLN B 255 PHE B 268 1 14 HELIX 23 23 GLN B 277 GLY B 298 1 22 HELIX 24 24 PHE B 307 ILE B 333 1 27 HELIX 25 25 GLY B 335 MET B 340 1 6 HELIX 26 26 MET B 340 CYS B 347 1 8 HELIX 27 27 PRO C 231 ALA C 241 1 11 HELIX 28 28 ASP C 263 ARG C 285 1 23 HELIX 29 29 PRO C 293 SER C 317 1 25 HELIX 30 30 ILE C 318 VAL C 320 5 3 HELIX 31 31 ARG C 334 ALA C 340 1 7 HELIX 32 32 VAL C 342 LEU C 353 1 12 HELIX 33 33 LEU C 353 ASP C 359 1 7 HELIX 34 34 ASP C 363 PHE C 376 1 14 HELIX 35 35 ASN C 385 LYS C 407 1 23 HELIX 36 36 GLY C 413 LEU C 420 1 8 HELIX 37 37 LEU C 420 ILE C 442 1 23 HELIX 38 38 ASP C 448 LEU C 455 1 8 HELIX 39 39 SER D 107 MET D 125 1 19 HELIX 40 40 PHE D 129 PHE D 135 5 7 HELIX 41 41 PRO D 138 PHE D 142 5 5 HELIX 42 42 VAL D 154 ASP D 178 1 25 HELIX 43 43 PRO D 186 THR D 208 1 23 HELIX 44 44 THR D 225 GLY D 233 1 9 HELIX 45 45 GLN D 235 LYS D 251 1 17 HELIX 46 46 GLN D 255 PHE D 268 1 14 HELIX 47 47 GLN D 277 GLY D 298 1 22 HELIX 48 48 PHE D 307 ALA D 317 1 11 HELIX 49 49 ALA D 317 ILE D 333 1 17 HELIX 50 50 GLY D 335 MET D 340 1 6 HELIX 51 51 MET D 340 CYS D 347 1 8 HELIX 52 52 HIS E 630 LEU E 637 1 8 HELIX 53 53 HIS F 687 GLN F 695 1 9 HELIX 54 54 HIS G 630 GLU G 639 1 10 HELIX 55 55 HIS H 687 LEU H 694 1 8 SHEET 1 A 2 GLY A 323 LEU A 326 0 SHEET 2 A 2 LEU A 330 HIS A 333 -1 O LEU A 330 N LEU A 326 SHEET 1 B 3 PHE B 210 CYS B 211 0 SHEET 2 B 3 ASN B 216 LEU B 218 -1 O ASN B 216 N CYS B 211 SHEET 3 B 3 ARG B 223 TYR B 224 -1 O TYR B 224 N PHE B 217 SHEET 1 C 2 GLY C 323 LEU C 326 0 SHEET 2 C 2 LEU C 330 HIS C 333 -1 O VAL C 332 N ILE C 324 SHEET 1 D 2 PHE D 210 CYS D 211 0 SHEET 2 D 2 ASN D 216 PHE D 217 -1 O ASN D 216 N CYS D 211 SITE 1 AC1 9 ILE C 268 ALA C 272 GLN C 275 PHE C 313 SITE 2 AC1 9 ARG C 316 LEU C 326 ALA C 327 ILE C 345 SITE 3 AC1 9 CYS C 432 SITE 1 AC2 7 ALA A 272 GLN A 275 PHE A 313 ARG A 316 SITE 2 AC2 7 ALA A 327 ILE A 345 CYS A 432 SITE 1 AC3 15 PHE D 161 ASN D 165 MET D 168 VAL D 199 SITE 2 AC3 15 HIS D 203 LEU D 206 PHE D 217 TYR D 224 SITE 3 AC3 15 THR D 225 ASP D 228 GLY D 229 LEU D 239 SITE 4 AC3 15 LEU D 242 PHE D 243 TYR D 326 CRYST1 128.020 128.020 212.175 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007811 0.004510 0.000000 0.00000 SCALE2 0.000000 0.009020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004713 0.00000