HEADER IRON BINDING PROTEIN 28-OCT-04 1XVX TITLE CRYSTAL STRUCTURE OF IRON-LOADED YERSINIA ENTEROCOLITICA YFUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YFUA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YFUA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS PERIPLASMIC IRON BINDING PROTEIN, IRON BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.R.SHOULDICE,D.E.MCREE,D.R.DOUGAN,L.W.TARI,A.B.SCHRYVERS REVDAT 6 14-FEB-24 1XVX 1 REMARK LINK REVDAT 5 13-JUL-11 1XVX 1 VERSN REVDAT 4 24-FEB-09 1XVX 1 VERSN REVDAT 3 01-MAR-05 1XVX 1 JRNL REVDAT 2 08-FEB-05 1XVX 1 JRNL REVDAT 1 14-DEC-04 1XVX 0 JRNL AUTH S.R.SHOULDICE,D.E.MCREE,D.R.DOUGAN,L.W.TARI,A.B.SCHRYVERS JRNL TITL NOVEL ANION-INDEPENDENT IRON COORDINATION BY MEMBERS OF A JRNL TITL 2 THIRD CLASS OF BACTERIAL PERIPLASMIC FERRIC ION-BINDING JRNL TITL 3 PROTEINS JRNL REF J.BIOL.CHEM. V. 280 5820 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15576371 JRNL DOI 10.1074/JBC.M411238200 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 3 NUMBER OF REFLECTIONS : 35434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.5240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2444 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3307 ; 1.221 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 9.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.138 ;25.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;12.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.224 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1844 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1289 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1685 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 289 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.049 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 0.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2473 ; 0.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 983 ; 1.711 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 834 ; 2.865 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8760 32.2560 14.8030 REMARK 3 T TENSOR REMARK 3 T11: -0.0932 T22: -0.0976 REMARK 3 T33: -0.1105 T12: -0.0021 REMARK 3 T13: -0.0010 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.8274 L22: 0.4892 REMARK 3 L33: 0.2970 L12: -0.3526 REMARK 3 L13: -0.1987 L23: 0.0423 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0087 S13: -0.0159 REMARK 3 S21: 0.0174 S22: 0.0037 S23: -0.0042 REMARK 3 S31: 0.0026 S32: -0.0002 S33: 0.0044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 33.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 11.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ZINC ACETATE DIHYDRATE, PEG 8000, REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.19600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.47550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.19600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.47550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 116 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 97 58.33 -97.31 REMARK 500 LYS A 206 -101.90 -94.49 REMARK 500 SER A 211 -13.82 -142.50 REMARK 500 LYS A 220 -151.94 52.61 REMARK 500 HIS A 221 19.58 58.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 115 SER A 116 -127.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 317 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 4 OD2 REMARK 620 2 GLU A 119 OE2 116.0 REMARK 620 3 HIS A 241 ND1 108.4 102.7 REMARK 620 4 GLU A 244 OE1 122.0 96.4 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 313 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 14 NE2 REMARK 620 2 GLU A 62 OE1 82.0 REMARK 620 3 ASP A 144 OD2 172.9 95.7 REMARK 620 4 TYR A 198 OH 95.7 87.5 90.9 REMARK 620 5 TYR A 199 OH 96.6 170.6 84.6 101.9 REMARK 620 6 HOH A 371 O 88.3 84.5 84.8 170.5 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 314 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE1 REMARK 620 2 GLU A 42 OE2 53.2 REMARK 620 3 GLU A 209 OE1 103.0 149.5 REMARK 620 4 GLU A 209 OE2 82.8 101.3 52.5 REMARK 620 5 HOH A 361 O 90.4 114.1 81.2 129.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 316 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 117 OE1 REMARK 620 2 GLU A 117 OE2 55.5 REMARK 620 3 HIS A 217 ND1 120.0 96.9 REMARK 620 4 HOH A 484 O 134.0 146.0 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 315 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD1 REMARK 620 2 ASP A 191 OD2 58.7 REMARK 620 3 CO3 A 319 O3 91.2 90.2 REMARK 620 4 HOH A 614 O 95.9 154.6 90.5 REMARK 620 5 HOH A 615 O 100.1 94.4 168.6 89.8 REMARK 620 6 HOH A 616 O 158.0 99.4 86.8 106.0 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 318 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 221 ND1 REMARK 620 2 ASP A 288 OD1 132.1 REMARK 620 3 ASP A 288 OD2 96.7 52.2 REMARK 620 4 HOH A 487 O 121.9 102.4 104.0 REMARK 620 5 HOH A 728 O 98.6 77.9 123.0 113.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 321 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT SER 5, PRO 93, GLU 117, REMARK 999 AND PRO 121 ARE ALL CORRECT, AS THESE RESIDUES REMARK 999 ARE DIFFERENT IN THE STRAIN THEY USED THAN IN REMARK 999 THE ONE USED FOR THE GENBANK SEQUENCE. DBREF 1XVX A 1 312 UNP Q56925 Q56925_YEREN 27 338 SEQADV 1XVX SER A 5 UNP Q56925 GLY 31 SEE REMARK 999 SEQADV 1XVX PRO A 93 UNP Q56925 ARG 119 SEE REMARK 999 SEQADV 1XVX GLU A 117 UNP Q56925 LYS 143 SEE REMARK 999 SEQADV 1XVX PRO A 121 UNP Q56925 ALA 147 SEE REMARK 999 SEQRES 1 A 312 GLU SER ASN ASP SER GLY ILE VAL VAL TYR ASN ALA GLN SEQRES 2 A 312 HIS GLU ASN LEU VAL LYS SER TRP VAL ASP GLY PHE THR SEQRES 3 A 312 LYS ASP THR GLY ILE LYS VAL THR LEU ARG ASN GLY GLY SEQRES 4 A 312 ASP SER GLU LEU GLY ASN GLN LEU VAL GLN GLU GLY SER SEQRES 5 A 312 ALA SER PRO ALA ASP VAL PHE LEU THR GLU ASN SER PRO SEQRES 6 A 312 ALA MET VAL LEU VAL ASP ASN ALA LYS LEU PHE ALA PRO SEQRES 7 A 312 LEU ASP ALA VAL THR GLN ALA GLN VAL ALA GLN GLU TYR SEQRES 8 A 312 ARG PRO GLU HIS GLY ARG TRP THR GLY ILE ALA ALA ARG SEQRES 9 A 312 SER THR VAL PHE VAL TYR ASN PRO GLU LYS ILE SER GLU SEQRES 10 A 312 ALA GLU LEU PRO LYS SER ILE MET ASP LEU ALA LYS PRO SEQRES 11 A 312 GLU TRP LYS GLY ARG TRP ALA ALA SER PRO SER GLY ALA SEQRES 12 A 312 ASP PHE GLN ALA ILE VAL SER ALA MET LEU GLU LEU LYS SEQRES 13 A 312 GLY GLU LYS ALA THR LEU GLU TRP LEU LYS ALA MET LYS SEQRES 14 A 312 THR ASN PHE THR ALA TYR LYS GLY ASN SER THR VAL MET SEQRES 15 A 312 LYS ALA VAL ASN ALA GLY GLN ILE ASP GLY GLY VAL ILE SEQRES 16 A 312 TYR HIS TYR TYR ARG PHE VAL ASP GLN ALA LYS THR GLY SEQRES 17 A 312 GLU ASN SER GLY LYS THR GLN LEU HIS TYR PHE LYS HIS SEQRES 18 A 312 GLN ASP PRO GLY ALA PHE VAL SER ILE SER GLY GLY GLY SEQRES 19 A 312 VAL LEU ALA SER SER LYS HIS PRO LYS GLU ALA GLN GLU SEQRES 20 A 312 PHE VAL LYS TRP ILE THR GLY LYS SER GLY GLN ASP ILE SEQRES 21 A 312 LEU ARG THR ASN ASN ALA PHE GLU TYR ALA VAL GLY VAL SEQRES 22 A 312 ASP ALA ALA SER ASN PRO LYS LEU VAL PRO LEU LYS ASP SEQRES 23 A 312 LEU ASP ALA PRO LYS VAL GLU PRO SER LYS LEU ASN SER SEQRES 24 A 312 LYS LYS VAL VAL GLU LEU MET THR GLU ALA GLY LEU LEU HET FE A 313 1 HET ZN A 314 1 HET ZN A 315 1 HET ZN A 316 1 HET ZN A 317 1 HET ZN A 318 1 HET CO3 A 319 4 HET EDO A 320 4 HET EDO A 321 4 HETNAM FE FE (III) ION HETNAM ZN ZINC ION HETNAM CO3 CARBONATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FE FE 3+ FORMUL 3 ZN 5(ZN 2+) FORMUL 8 CO3 C O3 2- FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 HOH *477(H2 O) HELIX 1 1 HIS A 14 GLY A 30 1 17 HELIX 2 2 GLY A 39 GLY A 51 1 13 HELIX 3 3 SER A 52 SER A 54 5 3 HELIX 4 4 SER A 64 ALA A 73 1 10 HELIX 5 5 ASP A 80 VAL A 87 1 8 HELIX 6 6 ALA A 88 ARG A 92 5 5 HELIX 7 7 SER A 116 LEU A 120 5 5 HELIX 8 8 SER A 123 LYS A 133 5 11 HELIX 9 9 GLY A 142 GLY A 157 1 16 HELIX 10 10 GLY A 157 ASN A 171 1 15 HELIX 11 11 GLY A 177 ALA A 187 1 11 HELIX 12 12 HIS A 197 ALA A 205 1 9 HELIX 13 13 ASP A 223 ALA A 226 5 4 HELIX 14 14 HIS A 241 GLY A 254 1 14 HELIX 15 15 GLY A 254 ASN A 264 1 11 HELIX 16 16 PRO A 283 LEU A 287 5 5 HELIX 17 17 GLU A 293 LEU A 297 5 5 HELIX 18 18 ASN A 298 ALA A 309 1 12 SHEET 1 A 8 VAL A 33 ASN A 37 0 SHEET 2 A 8 ILE A 7 ASN A 11 1 N VAL A 9 O THR A 34 SHEET 3 A 8 VAL A 58 THR A 61 1 O VAL A 58 N TYR A 10 SHEET 4 A 8 VAL A 228 VAL A 235 -1 O GLY A 232 N THR A 61 SHEET 5 A 8 THR A 99 TYR A 110 -1 N ILE A 101 O SER A 231 SHEET 6 A 8 GLY A 192 TYR A 196 -1 O ILE A 195 N VAL A 107 SHEET 7 A 8 TRP A 136 ALA A 138 1 N ALA A 137 O VAL A 194 SHEET 8 A 8 PHE A 172 ALA A 174 1 O THR A 173 N TRP A 136 SHEET 1 B 6 VAL A 33 ASN A 37 0 SHEET 2 B 6 ILE A 7 ASN A 11 1 N VAL A 9 O THR A 34 SHEET 3 B 6 VAL A 58 THR A 61 1 O VAL A 58 N TYR A 10 SHEET 4 B 6 VAL A 228 VAL A 235 -1 O GLY A 232 N THR A 61 SHEET 5 B 6 THR A 99 TYR A 110 -1 N ILE A 101 O SER A 231 SHEET 6 B 6 GLN A 215 HIS A 217 -1 O GLN A 215 N TYR A 110 LINK OD2 ASP A 4 ZN ZN A 317 1555 1555 1.96 LINK NE2 HIS A 14 FE FE A 313 1555 1555 2.21 LINK OE1 GLU A 42 ZN ZN A 314 1555 1555 2.73 LINK OE2 GLU A 42 ZN ZN A 314 1555 1555 1.97 LINK OE1 GLU A 62 FE FE A 313 1555 1555 2.16 LINK OE1 GLU A 117 ZN ZN A 316 1555 1555 2.45 LINK OE2 GLU A 117 ZN ZN A 316 1555 1555 2.26 LINK OE2 GLU A 119 ZN ZN A 317 3455 1555 1.93 LINK OD2 ASP A 144 FE FE A 313 1555 1555 2.12 LINK OD1 ASP A 191 ZN ZN A 315 1555 1555 2.26 LINK OD2 ASP A 191 ZN ZN A 315 1555 1555 2.23 LINK OH TYR A 198 FE FE A 313 1555 1555 2.04 LINK OH TYR A 199 FE FE A 313 1555 1555 2.09 LINK OE1 GLU A 209 ZN ZN A 314 4555 1555 2.69 LINK OE2 GLU A 209 ZN ZN A 314 4555 1555 2.13 LINK ND1 HIS A 217 ZN ZN A 316 1555 1555 2.14 LINK ND1 HIS A 221 ZN ZN A 318 1555 1555 2.13 LINK ND1 HIS A 241 ZN ZN A 317 1555 1555 2.05 LINK OE1 GLU A 244 ZN ZN A 317 1555 1555 2.05 LINK OD1 ASP A 288 ZN ZN A 318 2656 1555 2.73 LINK OD2 ASP A 288 ZN ZN A 318 2656 1555 2.05 LINK FE FE A 313 O HOH A 371 1555 1555 2.17 LINK ZN ZN A 314 O HOH A 361 1555 4555 2.44 LINK ZN ZN A 315 O3 CO3 A 319 1555 1555 2.28 LINK ZN ZN A 315 O HOH A 614 1555 1555 2.08 LINK ZN ZN A 315 O HOH A 615 1555 1555 2.07 LINK ZN ZN A 315 O HOH A 616 1555 1555 2.08 LINK ZN ZN A 316 O HOH A 484 1555 1555 2.49 LINK ZN ZN A 318 O HOH A 487 1555 1555 2.18 LINK ZN ZN A 318 O HOH A 728 1555 1555 2.21 SITE 1 AC1 6 HIS A 14 GLU A 62 ASP A 144 TYR A 198 SITE 2 AC1 6 TYR A 199 HOH A 371 SITE 1 AC2 4 GLU A 42 GLU A 209 HOH A 361 HOH A 546 SITE 1 AC3 5 ASP A 191 CO3 A 319 HOH A 614 HOH A 615 SITE 2 AC3 5 HOH A 616 SITE 1 AC4 4 GLU A 117 HIS A 217 HOH A 484 HOH A 597 SITE 1 AC5 4 ASP A 4 GLU A 119 HIS A 241 GLU A 244 SITE 1 AC6 4 HIS A 221 ASP A 288 HOH A 487 HOH A 728 SITE 1 AC7 6 ARG A 135 ASP A 191 ZN A 315 HOH A 431 SITE 2 AC7 6 HOH A 614 HOH A 616 SITE 1 AC8 8 GLY A 6 VAL A 8 PRO A 55 ASP A 57 SITE 2 AC8 8 HIS A 241 HOH A 389 HOH A 531 HOH A 718 SITE 1 AC9 7 VAL A 228 PRO A 290 VAL A 292 HOH A 342 SITE 2 AC9 7 HOH A 461 HOH A 462 HOH A 655 CRYST1 108.392 46.951 62.454 90.00 103.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009226 0.000000 0.002217 0.00000 SCALE2 0.000000 0.021299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016468 0.00000