HEADER ISOMERASE 03-NOV-04 1XX4 TITLE CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL 3,2-ENOYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,2-TRANS-ENOYL-COA ISOMERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DODECENOYL-COA DELTA-ISOMERASE; COMPND 5 EC: 5.3.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DCI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PND-1 KEYWDS CROTONASE SUPERFAMILY, DOMAIN SWAPPED, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.HUBBARD,W.YU,H.SCHULZ,J.-J.KIM REVDAT 9 03-APR-24 1XX4 1 REMARK REVDAT 8 14-FEB-24 1XX4 1 REMARK REVDAT 7 04-AUG-21 1XX4 1 COMPND REMARK HET FORMUL REVDAT 7 2 1 LINK ATOM REVDAT 6 16-NOV-11 1XX4 1 HETATM REVDAT 5 13-JUL-11 1XX4 1 VERSN REVDAT 4 24-FEB-09 1XX4 1 VERSN REVDAT 3 14-JUN-05 1XX4 1 JRNL REVDAT 2 07-JUN-05 1XX4 1 JRNL REVDAT 1 23-NOV-04 1XX4 0 JRNL AUTH P.A.HUBBARD,W.YU,H.SCHULZ,J.J.KIM JRNL TITL DOMAIN SWAPPING IN THE LOW-SIMILARITY ISOMERASE/HYDRATASE JRNL TITL 2 SUPERFAMILY: THE CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL JRNL TITL 3 DELTA3, DELTA2-ENOYL-COA ISOMERASE. JRNL REF PROTEIN SCI. V. 14 1545 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15883186 JRNL DOI 10.1110/PS.041303705 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 255422.780 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3349 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 168 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.670 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 42.33 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PO4.PARAM REMARK 3 PARAMETER FILE 5 : BAM.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.ROP REMARK 3 TOPOLOGY FILE 4 : PO4.TOP REMARK 3 TOPOLOGY FILE 5 : BAM.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-03; 14-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; N REMARK 200 RADIATION SOURCE : ROTATING ANODE; ROTATING ANODE REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL MIRRORS; OSMIC REMARK 200 CONFOCAL MIRRORS REMARK 200 OPTICS : OSMIC CONFOCAL MIRRORS; OSMIC REMARK 200 CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV; RIGAKU RAXIS REMARK 200 IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.76 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF CROTONASE FOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-MME 550, MES, ZINC SULFATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 84.95900 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 84.95900 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 84.95900 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 84.95900 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 84.95900 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 42.47950 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 127.43850 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 127.43850 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 127.43850 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 42.47950 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 127.43850 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 42.47950 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 127.43850 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 42.47950 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 42.47950 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 42.47950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 169.91800 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -84.95900 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 84.95900 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 84.95900 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 84.95900 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 169.91800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -236.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 212.39750 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 42.47950 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 42.47950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 GLU A 41 REMARK 465 GLN A 286 REMARK 465 LYS A 287 REMARK 465 LYS A 288 REMARK 465 GLY A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 279 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -66.69 -99.30 REMARK 500 SER A 92 133.56 -172.81 REMARK 500 ALA A 139 -109.92 25.37 REMARK 500 LEU A 284 55.84 -97.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 GLU A 110 OE1 100.5 REMARK 620 3 PO4 A 300 O4 97.8 108.3 REMARK 620 4 PO4 A 300 O3 126.7 108.7 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 220 ND1 REMARK 620 2 PO4 A 301 O3 99.0 REMARK 620 3 PO4 A 302 O3 65.1 130.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 301 O1 REMARK 620 2 PO4 A 301 O4 56.3 REMARK 620 3 PO4 A 302 O4 106.3 60.7 REMARK 620 4 PO4 A 302 O1 121.4 112.4 57.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DUB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CROTONASE REMARK 900 RELATED ID: 1PJH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PEROXISOMAL 3,2-ENOYOL-COA ISOMERASE REMARK 900 RELATED ID: 1HZD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AUH PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT ELECTRON DENSITIES REMARK 999 AND FINAL MODEL AT RESIDUES 61 AND 101 DO REMARK 999 NOT AGREE WITH THE CORRESPONDING SWISSPROT REMARK 999 ENTRY. DBREF 1XX4 A 29 289 UNP P23965 D3D2_RAT 29 289 SEQADV 1XX4 PHE A 61 UNP P23965 CYS 61 SEE REMARK 999 SEQADV 1XX4 TYR A 101 UNP P23965 SER 101 SEE REMARK 999 SEQRES 1 A 261 PHE SER ASN LYS ARG VAL LEU VAL GLU LYS GLU GLY GLU SEQRES 2 A 261 ALA GLY ILE ALA VAL MET LYS PHE LYS ASN PRO PRO VAL SEQRES 3 A 261 ASN SER LEU SER LEU GLU PHE LEU THR GLU PHE VAL ILE SEQRES 4 A 261 SER LEU GLU LYS LEU GLU ASN ASP LYS SER ILE ARG GLY SEQRES 5 A 261 VAL ILE LEU THR SER GLU ARG PRO GLY ILE PHE SER ALA SEQRES 6 A 261 GLY LEU ASP LEU MET GLU MET TYR GLY ARG ASN PRO ALA SEQRES 7 A 261 HIS TYR ALA GLU TYR TRP LYS ALA VAL GLN GLU LEU TRP SEQRES 8 A 261 LEU ARG LEU TYR LEU SER ASN LEU THR LEU ILE SER ALA SEQRES 9 A 261 ILE ASN GLY ALA SER PRO ALA GLY GLY CYS LEU MET ALA SEQRES 10 A 261 LEU THR CYS ASP TYR ARG ILE MET ALA ASP ASN SER LYS SEQRES 11 A 261 TYR THR ILE GLY LEU ASN GLU SER LEU LEU GLY ILE VAL SEQRES 12 A 261 ALA PRO PHE TRP LEU LYS ASP ASN TYR VAL ASN THR ILE SEQRES 13 A 261 GLY HIS ARG ALA ALA GLU ARG ALA LEU GLN LEU GLY THR SEQRES 14 A 261 LEU PHE PRO PRO ALA GLU ALA LEU LYS VAL GLY LEU VAL SEQRES 15 A 261 ASP GLU VAL VAL PRO GLU ASP GLN VAL HIS SER LYS ALA SEQRES 16 A 261 ARG SER VAL MET ALA LYS TRP PHE THR ILE PRO ASP HIS SEQRES 17 A 261 SER ARG GLN LEU THR LYS SER MET MET ARG LYS ALA THR SEQRES 18 A 261 ALA ASP ASN LEU ILE LYS GLN ARG GLU ALA ASP ILE GLN SEQRES 19 A 261 ASN PHE THR SER PHE ILE SER ARG ASP SER ILE GLN LYS SEQRES 20 A 261 SER LEU HIS VAL TYR LEU GLU LYS LEU LYS GLN LYS LYS SEQRES 21 A 261 GLY HET PO4 A 300 5 HET PO4 A 301 5 HET PO4 A 302 5 HET ZN A 400 1 HET ZN A 401 1 HET ZN A 402 1 HET BEN A 600 9 HET BEN A 700 9 HET BEN A 800 9 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION HETNAM BEN BENZAMIDINE FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 ZN 3(ZN 2+) FORMUL 8 BEN 3(C7 H8 N2) FORMUL 11 HOH *90(H2 O) HELIX 1 1 SER A 58 ASP A 75 1 18 HELIX 2 2 LEU A 97 TYR A 101 5 5 HELIX 3 3 ASN A 104 LEU A 124 1 21 HELIX 4 4 ALA A 139 CYS A 148 1 10 HELIX 5 5 ASN A 164 GLY A 169 5 6 HELIX 6 6 PRO A 173 GLY A 185 1 13 HELIX 7 7 GLY A 185 GLY A 196 1 12 HELIX 8 8 PRO A 200 VAL A 207 1 8 HELIX 9 9 PRO A 215 ASP A 217 5 3 HELIX 10 10 GLN A 218 PHE A 231 1 14 HELIX 11 11 PRO A 234 LYS A 255 1 22 HELIX 12 12 GLN A 256 ARG A 270 1 15 HELIX 13 13 ARG A 270 LYS A 283 1 14 SHEET 1 A 6 VAL A 34 GLU A 37 0 SHEET 2 A 6 ILE A 44 PHE A 49 -1 O LYS A 48 N LEU A 35 SHEET 3 A 6 GLY A 80 SER A 85 1 O ILE A 82 N MET A 47 SHEET 4 A 6 THR A 128 ILE A 133 1 O THR A 128 N VAL A 81 SHEET 5 A 6 TYR A 150 ALA A 154 1 O ILE A 152 N ILE A 133 SHEET 6 A 6 GLU A 212 VAL A 214 1 O GLU A 212 N MET A 153 SHEET 1 B 2 SER A 56 LEU A 57 0 SHEET 2 B 2 GLY A 94 LEU A 95 1 O GLY A 94 N LEU A 57 SHEET 1 C 3 GLY A 89 ILE A 90 0 SHEET 2 C 3 GLY A 135 PRO A 138 1 O ALA A 136 N GLY A 89 SHEET 3 C 3 ILE A 161 GLY A 162 1 O GLY A 162 N SER A 137 LINK ND1 HIS A 107 ZN ZN A 400 1555 1555 2.09 LINK OE1 GLU A 110 ZN ZN A 400 1555 1555 2.30 LINK ND1 HIS A 220 ZN ZN A 401 1555 1555 2.42 LINK O4 PO4 A 300 ZN ZN A 400 1555 1555 2.15 LINK O3 PO4 A 300 ZN ZN A 400 43655 1555 2.37 LINK O3 PO4 A 301 ZN ZN A 401 1555 1555 2.66 LINK O1 PO4 A 301 ZN ZN A 402 1555 1555 2.73 LINK O4 PO4 A 301 ZN ZN A 402 1555 1555 2.70 LINK O3 PO4 A 302 ZN ZN A 401 1555 1555 2.65 LINK O4 PO4 A 302 ZN ZN A 402 1555 1555 2.67 LINK O1 PO4 A 302 ZN ZN A 402 1555 1555 2.64 CISPEP 1 PRO A 52 PRO A 53 0 0.21 SITE 1 AC1 7 LEU A 59 ARG A 103 ASN A 104 HIS A 107 SITE 2 AC1 7 GLU A 110 ZN A 400 HOH A 518 SITE 1 AC2 6 HIS A 220 HIS A 278 GLU A 282 PO4 A 302 SITE 2 AC2 6 ZN A 401 ZN A 402 SITE 1 AC3 6 HIS A 220 ARG A 224 HIS A 278 PO4 A 301 SITE 2 AC3 6 ZN A 401 ZN A 402 SITE 1 AC4 3 HIS A 107 GLU A 110 PO4 A 300 SITE 1 AC5 4 HIS A 220 PO4 A 301 PO4 A 302 ZN A 402 SITE 1 AC6 4 HIS A 278 PO4 A 301 PO4 A 302 ZN A 401 SITE 1 AC7 2 VAL A 171 PHE A 267 SITE 1 AC8 7 TRP A 112 VAL A 171 PRO A 173 ASP A 260 SITE 2 AC8 7 PHE A 267 HOH A 510 HOH A 573 SITE 1 AC9 4 ILE A 170 VAL A 171 PHE A 264 PHE A 267 CRYST1 169.918 169.918 169.918 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005884 0.00000