HEADER METAL BINDING PROTEIN 12-NOV-04 1XZO TITLE IDENTIFICATION OF A DISULFIDE SWITCH IN BSSCO, A MEMBER OF THE SCO TITLE 2 FAMILY OF CYTOCHROME C OXIDASE ASSEMBLY PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YPMQ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BSSCO; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: DH5F; SOURCE 5 GENE: YPMQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-4T3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNM137 KEYWDS THIOREDOXIN-LIKE FOLD, STRUCTURAL GENOMICS, MONTREAL-KINGSTON KEYWDS 2 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, METAL BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,I.IMRISKOVA-SOSOVA,B.C.HILL,Z.JIA,MONTREAL-KINGSTON BACTERIAL AUTHOR 2 STRUCTURAL GENOMICS INITIATIVE (BSGI) REVDAT 7 14-FEB-24 1XZO 1 REMARK LINK REVDAT 6 17-JUN-20 1XZO 1 REMARK SEQADV SEQRES REVDAT 5 11-OCT-17 1XZO 1 REMARK REVDAT 4 13-JUL-11 1XZO 1 VERSN REVDAT 3 24-FEB-09 1XZO 1 VERSN REVDAT 2 05-DEC-06 1XZO 1 KEYWDS REVDAT 1 01-MAR-05 1XZO 0 JRNL AUTH Q.YE,I.IMRISKOVA-SOSOVA,B.C.HILL,Z.JIA JRNL TITL IDENTIFICATION OF A DISULFIDE SWITCH IN BSSCO, A MEMBER OF JRNL TITL 2 THE SCO FAMILY OF CYTOCHROME C OXIDASE ASSEMBLY PROTEINS JRNL REF BIOCHEMISTRY V. 44 2934 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15723536 JRNL DOI 10.1021/BI0480537 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 51554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2767 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2347 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3737 ; 2.388 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5523 ; 1.147 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 7.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3052 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 510 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 871 ; 0.331 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2856 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1609 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.315 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 28 ; 0.515 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.363 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.506 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 1.618 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 2.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 4.009 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 973 ; 5.922 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : SI(III) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 64.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5K MME, CDCL2, CACL2, MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.82200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.91100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.91100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.82200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -338.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLU B 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CB REMARK 470 LYS A 24 CE REMARK 470 GLU A 34 CD OE1 REMARK 470 ILE A 41 CD1 REMARK 470 ASN A 44 ND2 REMARK 470 ILE A 48 CD1 REMARK 470 ILE A 68 CD1 REMARK 470 ILE A 72 CD1 REMARK 470 ILE A 73 CD1 REMARK 470 ILE A 112 CD1 REMARK 470 ILE A 123 CD1 REMARK 470 VAL A 155 CG2 REMARK 470 ILE A 163 CD1 REMARK 470 ILE A 164 CD1 REMARK 470 ILE B 5 CD1 REMARK 470 ILE B 41 CD1 REMARK 470 GLU B 46 CG REMARK 470 ILE B 48 CD1 REMARK 470 ILE B 68 CD1 REMARK 470 ILE B 72 CD1 REMARK 470 ILE B 73 CD1 REMARK 470 ILE B 112 CD1 REMARK 470 ILE B 123 CD1 REMARK 470 VAL B 133 CG1 REMARK 470 ILE B 134 CD1 REMARK 470 LYS B 147 CG REMARK 470 LYS B 150 NZ REMARK 470 ILE B 163 CD1 REMARK 470 ILE B 164 CD1 REMARK 470 THR B 172 CG2 REMARK 470 LEU B 173 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD B 1000 O HOH B 1203 1.15 REMARK 500 CD CD A 1001 O HOH A 1186 1.19 REMARK 500 CA CA A 1008 O HOH A 1187 1.24 REMARK 500 CA CA B 1006 O HOH B 1153 1.27 REMARK 500 CD CD A 1002 O HOH B 1208 1.28 REMARK 500 OE2 GLU B 34 O HOH B 1216 1.48 REMARK 500 OE2 GLU B 34 O HOH B 1206 1.52 REMARK 500 CZ2 TRP A 36 O HOH A 1188 1.69 REMARK 500 CG1 ILE B 73 O HOH B 1204 1.71 REMARK 500 CD GLU B 34 O HOH B 1206 1.81 REMARK 500 O HOH B 1062 O HOH B 1152 1.85 REMARK 500 O HOH B 1090 O HOH B 1211 1.88 REMARK 500 SD MET A 56 O HOH A 1189 1.89 REMARK 500 OE1 GLU B 34 O HOH B 1206 1.90 REMARK 500 CB LYS B 147 O HOH B 1209 1.97 REMARK 500 CE LYS B 125 O HOH B 1210 1.98 REMARK 500 O HOH B 1091 O HOH B 1135 1.99 REMARK 500 NZ LYS B 174 O HOH B 1151 2.01 REMARK 500 SD MET B 52 O HOH B 1140 2.03 REMARK 500 O HOH B 1056 O HOH B 1086 2.04 REMARK 500 NZ LYS B 88 O HOH B 1174 2.06 REMARK 500 OE1 GLN A 19 O HOH A 1165 2.07 REMARK 500 O HOH B 1158 O HOH B 1217 2.08 REMARK 500 OG SER A 171 O HOH A 1190 2.09 REMARK 500 O HOH A 1192 O HOH B 1153 2.09 REMARK 500 O HOH A 1151 O HOH A 1182 2.10 REMARK 500 CG2 ILE B 73 O HOH B 1165 2.13 REMARK 500 O HOH B 1071 O HOH B 1207 2.13 REMARK 500 OD2 ASP B 69 O HOH B 1206 2.13 REMARK 500 NZ LYS A 118 O HOH A 1083 2.17 REMARK 500 O HOH A 1068 O HOH A 1127 2.18 REMARK 500 OD2 ASP B 78 O HOH B 1103 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1037 O HOH B 1037 4555 1.28 REMARK 500 O HOH B 1040 O HOH B 1040 4555 1.64 REMARK 500 OD2 ASP A 161 O HOH B 1203 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 36 CB TRP A 36 CG -0.162 REMARK 500 TRP A 36 CG TRP A 36 CD2 -0.115 REMARK 500 TRP A 36 CE3 TRP A 36 CZ3 -0.146 REMARK 500 TRP A 36 CZ3 TRP A 36 CH2 -0.098 REMARK 500 MET A 56 CG MET A 56 SD -0.173 REMARK 500 MET A 56 SD MET A 56 CE -0.571 REMARK 500 ASP A 58 CB ASP A 58 CG 0.166 REMARK 500 ASP A 58 CG ASP A 58 OD2 0.152 REMARK 500 PHE A 75 CE1 PHE A 75 CZ 0.120 REMARK 500 PHE A 98 CE2 PHE A 98 CD2 -0.135 REMARK 500 TYR A 160 CD1 TYR A 160 CE1 -0.112 REMARK 500 TYR A 160 CE2 TYR A 160 CD2 -0.101 REMARK 500 GLU B 12 CD GLU B 12 OE2 0.107 REMARK 500 GLU B 34 CG GLU B 34 CD 0.095 REMARK 500 GLU B 34 CD GLU B 34 OE2 0.155 REMARK 500 HIS B 55 C HIS B 55 O -0.187 REMARK 500 ASP B 145 CB ASP B 145 CG 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 56 CG - SD - CE ANGL. DEV. = 17.1 DEGREES REMARK 500 ASP A 58 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = 21.0 DEGREES REMARK 500 ASP A 78 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 22 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 HIS B 55 CA - C - O ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP B 99 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LYS B 125 CD - CE - NZ ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP B 131 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 PHE B 139 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -120.83 -46.71 REMARK 500 ILE A 48 112.25 -0.47 REMARK 500 PRO A 95 43.70 -76.48 REMARK 500 GLU A 128 43.65 -92.25 REMARK 500 ASP A 131 98.76 165.86 REMARK 500 GLN A 132 -95.26 -21.35 REMARK 500 HIS A 135 -166.30 85.79 REMARK 500 GLN B 4 -67.07 86.54 REMARK 500 ILE B 5 63.51 161.41 REMARK 500 THR B 47 -58.26 94.14 REMARK 500 PRO B 51 -75.35 -64.20 REMARK 500 MET B 52 -47.51 11.41 REMARK 500 ASP B 78 56.53 -141.39 REMARK 500 THR B 105 -158.10 -155.18 REMARK 500 GLN B 132 127.26 175.47 REMARK 500 ILE B 134 100.24 16.54 REMARK 500 GLN B 136 131.35 95.98 REMARK 500 LEU B 173 56.00 -109.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 132 VAL A 133 143.80 REMARK 500 PRO B 51 MET B 52 -141.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1004 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 6 NZ REMARK 620 2 ASP A 162 OD1 163.0 REMARK 620 3 ASP A 162 OD2 142.6 47.2 REMARK 620 4 ASP A 166 OD1 100.3 95.4 79.1 REMARK 620 5 ASP A 166 OD2 88.3 96.4 117.6 52.1 REMARK 620 6 HOH A1183 O 91.0 73.2 92.7 168.7 127.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 14 OE2 REMARK 620 2 GLU A 14 OE1 54.6 REMARK 620 3 GLU B 114 OE1 124.7 73.1 REMARK 620 4 GLU B 114 OE2 148.7 105.1 55.1 REMARK 620 5 HOH B1215 O 85.4 74.3 62.6 113.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1016 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 16 O REMARK 620 2 HOH A1123 O 155.4 REMARK 620 3 SER B 108 OG 123.6 80.1 REMARK 620 4 HOH B1022 O 59.9 143.3 63.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 O REMARK 620 2 CA A1010 CA 79.5 REMARK 620 3 HOH A1044 O 130.6 131.4 REMARK 620 4 HOH A1073 O 94.7 74.1 67.3 REMARK 620 5 HOH A1162 O 78.1 53.9 149.5 127.9 REMARK 620 6 THR B 17 O 156.1 78.7 72.3 88.8 81.1 REMARK 620 7 HOH B1020 O 94.8 140.7 81.2 145.2 86.8 95.7 REMARK 620 8 HOH B1039 O 72.3 138.5 59.5 78.5 142.0 131.5 72.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1010 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 O REMARK 620 2 GLY A 106 O 107.9 REMARK 620 3 HOH A1073 O 69.3 62.1 REMARK 620 4 HOH A1162 O 68.9 176.7 116.6 REMARK 620 5 THR B 17 O 95.5 109.0 66.7 72.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1008 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE1 REMARK 620 2 GLU A 29 OE2 50.2 REMARK 620 3 HOH B1025 O 92.9 139.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 CA A1015 CA 92.3 REMARK 620 3 HOH A1035 O 108.0 92.3 REMARK 620 4 ASP B 161 OD1 149.1 100.0 99.7 REMARK 620 5 ASP B 161 OD2 95.7 92.8 155.5 55.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1015 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 TYR A 160 OH 78.5 REMARK 620 3 HOH A1064 O 108.2 108.9 REMARK 620 4 HOH A1111 O 59.8 73.6 55.7 REMARK 620 5 ASP B 161 OD2 62.2 122.7 54.8 51.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1009 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 HOH A1058 O 121.1 REMARK 620 3 HOH A1079 O 85.8 89.0 REMARK 620 4 HOH A1185 O 35.7 125.0 120.3 REMARK 620 5 HOH B1219 O 90.0 96.0 174.7 55.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1013 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 HOH A1124 O 85.7 REMARK 620 3 HOH A1184 O 80.9 166.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1014 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 78 OD1 54.8 REMARK 620 3 HOH A1048 O 109.1 98.9 REMARK 620 4 HOH A1109 O 120.4 82.7 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1012 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 108 OG REMARK 620 2 HOH A1072 O 64.8 REMARK 620 3 PHE B 16 O 123.9 59.1 REMARK 620 4 HOH B1102 O 77.8 140.8 156.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1003 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 113 OE2 REMARK 620 2 GLU A 113 OE1 57.4 REMARK 620 3 LYS A 125 NZ 171.1 124.4 REMARK 620 4 HOH A1029 O 91.5 140.9 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1000 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 161 OD2 52.2 REMARK 620 3 HIS B 55 NE2 97.4 135.9 REMARK 620 4 CA B1011 CA 92.7 112.8 97.9 REMARK 620 5 HOH B1036 O 150.3 98.5 109.5 95.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1033 O REMARK 620 2 HOH A1138 O 113.9 REMARK 620 3 HOH A1192 O 81.9 84.8 REMARK 620 4 GLU B 29 OE1 158.9 86.7 96.0 REMARK 620 5 GLU B 29 OE2 104.0 140.3 89.3 54.9 REMARK 620 6 HOH B1214 O 94.1 104.4 170.8 84.7 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1011 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1080 O REMARK 620 2 TYR B 160 OH 110.5 REMARK 620 3 HOH B1066 O 59.6 67.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD2 REMARK 620 2 ASP B 58 OD1 50.1 REMARK 620 3 HOH B1089 O 68.1 113.1 REMARK 620 4 HOH B1107 O 134.1 86.0 156.9 REMARK 620 5 HOH B1122 O 94.6 78.6 83.8 87.7 REMARK 620 6 HOH B1138 O 76.9 62.2 129.6 69.9 135.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1017 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 ASP B 151 OD2 51.0 REMARK 620 3 HOH B1181 O 70.2 96.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1018 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 162 OD1 REMARK 620 2 ASP B 162 OD2 45.5 REMARK 620 3 ASP B 166 OD2 92.6 117.5 REMARK 620 4 ASP B 166 OD1 95.1 84.0 50.5 REMARK 620 5 HOH B1100 O 75.7 70.8 153.6 152.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1017 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1018 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YPMQ_BACSU RELATED DB: TARGETDB DBREF 1XZO A 1 174 UNP P54178 YPMQ_BACSU 20 193 DBREF 1XZO B 1 174 UNP P54178 YPMQ_BACSU 20 193 SEQADV 1XZO SER A 2 UNP P54178 GLY 21 CLONING ARTIFACT SEQADV 1XZO GLU A 66 UNP P54178 GLY 85 CONFLICT SEQADV 1XZO SER B 2 UNP P54178 GLY 21 CLONING ARTIFACT SEQADV 1XZO GLU B 66 UNP P54178 GLY 85 CONFLICT SEQRES 1 A 174 GLY SER GLN GLN ILE LYS ASP PRO LEU ASN TYR GLU VAL SEQRES 2 A 174 GLU PRO PHE THR PHE GLN ASN GLN ASP GLY LYS ASN VAL SEQRES 3 A 174 SER LEU GLU SER LEU LYS GLY GLU VAL TRP LEU ALA ASP SEQRES 4 A 174 PHE ILE PHE THR ASN CYS GLU THR ILE CYS PRO PRO MET SEQRES 5 A 174 THR ALA HIS MET THR ASP LEU GLN LYS LYS LEU LYS ALA SEQRES 6 A 174 GLU ASN ILE ASP VAL ARG ILE ILE SER PHE SER VAL ASP SEQRES 7 A 174 PRO GLU ASN ASP LYS PRO LYS GLN LEU LYS LYS PHE ALA SEQRES 8 A 174 ALA ASN TYR PRO LEU SER PHE ASP ASN TRP ASP PHE LEU SEQRES 9 A 174 THR GLY TYR SER GLN SER GLU ILE GLU GLU PHE ALA LEU SEQRES 10 A 174 LYS SER PHE LYS ALA ILE VAL LYS LYS PRO GLU GLY GLU SEQRES 11 A 174 ASP GLN VAL ILE HIS GLN SER SER PHE TYR LEU VAL GLY SEQRES 12 A 174 PRO ASP GLY LYS VAL LEU LYS ASP TYR ASN GLY VAL GLU SEQRES 13 A 174 ASN THR PRO TYR ASP ASP ILE ILE SER ASP VAL LYS SER SEQRES 14 A 174 ALA SER THR LEU LYS SEQRES 1 B 174 GLY SER GLN GLN ILE LYS ASP PRO LEU ASN TYR GLU VAL SEQRES 2 B 174 GLU PRO PHE THR PHE GLN ASN GLN ASP GLY LYS ASN VAL SEQRES 3 B 174 SER LEU GLU SER LEU LYS GLY GLU VAL TRP LEU ALA ASP SEQRES 4 B 174 PHE ILE PHE THR ASN CYS GLU THR ILE CYS PRO PRO MET SEQRES 5 B 174 THR ALA HIS MET THR ASP LEU GLN LYS LYS LEU LYS ALA SEQRES 6 B 174 GLU ASN ILE ASP VAL ARG ILE ILE SER PHE SER VAL ASP SEQRES 7 B 174 PRO GLU ASN ASP LYS PRO LYS GLN LEU LYS LYS PHE ALA SEQRES 8 B 174 ALA ASN TYR PRO LEU SER PHE ASP ASN TRP ASP PHE LEU SEQRES 9 B 174 THR GLY TYR SER GLN SER GLU ILE GLU GLU PHE ALA LEU SEQRES 10 B 174 LYS SER PHE LYS ALA ILE VAL LYS LYS PRO GLU GLY GLU SEQRES 11 B 174 ASP GLN VAL ILE HIS GLN SER SER PHE TYR LEU VAL GLY SEQRES 12 B 174 PRO ASP GLY LYS VAL LEU LYS ASP TYR ASN GLY VAL GLU SEQRES 13 B 174 ASN THR PRO TYR ASP ASP ILE ILE SER ASP VAL LYS SER SEQRES 14 B 174 ALA SER THR LEU LYS HET CD A1001 1 HET CD A1002 1 HET CD A1003 1 HET CD A1004 1 HET CA A1005 1 HET CA A1008 1 HET CA A1009 1 HET CA A1010 1 HET CA A1013 1 HET CA A1014 1 HET CA A1015 1 HET CA A1016 1 HET CD B1000 1 HET CA B1006 1 HET CA B1007 1 HET CA B1011 1 HET CA B1012 1 HET CA B1017 1 HET CA B1018 1 HETNAM CD CADMIUM ION HETNAM CA CALCIUM ION FORMUL 3 CD 5(CD 2+) FORMUL 7 CA 14(CA 2+) FORMUL 22 HOH *388(H2 O) HELIX 1 1 GLU A 29 LYS A 32 5 4 HELIX 2 2 THR A 53 GLU A 66 1 14 HELIX 3 3 LYS A 83 ALA A 92 1 10 HELIX 4 4 SER A 97 ASP A 99 5 3 HELIX 5 5 SER A 108 LYS A 121 1 14 HELIX 6 6 PRO A 159 SER A 171 1 13 HELIX 7 7 GLU B 29 LYS B 32 5 4 HELIX 8 8 THR B 53 GLU B 66 1 14 HELIX 9 9 LYS B 83 ALA B 92 1 10 HELIX 10 10 SER B 97 ASP B 99 5 3 HELIX 11 11 SER B 108 LYS B 121 1 14 HELIX 12 12 PRO B 159 SER B 171 1 13 SHEET 1 A 6 TYR A 11 GLU A 12 0 SHEET 2 A 6 LYS A 147 ASN A 153 -1 O VAL A 148 N TYR A 11 SHEET 3 A 6 SER A 138 VAL A 142 -1 N LEU A 141 O LEU A 149 SHEET 4 A 6 TRP A 36 ILE A 41 -1 N TRP A 36 O VAL A 142 SHEET 5 A 6 ARG A 71 SER A 76 1 O ILE A 73 N LEU A 37 SHEET 6 A 6 TRP A 101 LEU A 104 1 O LEU A 104 N SER A 74 SHEET 1 B 2 THR A 17 GLN A 19 0 SHEET 2 B 2 ASN A 25 SER A 27 -1 O VAL A 26 N PHE A 18 SHEET 1 C 6 TYR B 11 GLU B 12 0 SHEET 2 C 6 LYS B 147 ASN B 153 -1 O VAL B 148 N TYR B 11 SHEET 3 C 6 SER B 138 VAL B 142 -1 N LEU B 141 O LEU B 149 SHEET 4 C 6 TRP B 36 ILE B 41 -1 N TRP B 36 O VAL B 142 SHEET 5 C 6 ARG B 71 SER B 76 1 O ILE B 73 N LEU B 37 SHEET 6 C 6 TRP B 101 LEU B 104 1 O LEU B 104 N SER B 74 SHEET 1 D 2 THR B 17 GLN B 19 0 SHEET 2 D 2 ASN B 25 SER B 27 -1 O VAL B 26 N PHE B 18 LINK NZ LYS A 6 CD CD A1004 1555 1555 2.60 LINK OE2 GLU A 14 CD CD A1002 1555 1555 2.52 LINK OE1 GLU A 14 CD CD A1002 1555 1555 2.40 LINK O PHE A 16 CA CA A1016 1555 1555 3.38 LINK O THR A 17 CA CA A1005 1555 1555 2.31 LINK O THR A 17 CA CA A1010 1555 1555 3.10 LINK OE1 GLU A 29 CA CA A1008 1555 1555 2.73 LINK OE2 GLU A 29 CA CA A1008 1555 1555 2.33 LINK NE2 HIS A 55 CD CD A1001 1555 1555 2.24 LINK NE2 HIS A 55 CA CA A1015 1555 1555 3.27 LINK OD2 ASP A 58 CA CA A1009 1555 1555 1.60 LINK OD1 ASP A 69 CA CA A1013 1555 1555 2.23 LINK OD2 ASP A 78 CA CA A1014 1555 1555 2.12 LINK OD1 ASP A 78 CA CA A1014 1555 1555 2.45 LINK O GLY A 106 CA CA A1010 1555 1555 2.68 LINK OG SER A 108 CA CA B1012 1555 1555 3.15 LINK OE2 GLU A 113 CD CD A1003 1555 1555 2.45 LINK OE1 GLU A 113 CD CD A1003 1555 1555 2.19 LINK NZ LYS A 125 CD CD A1003 1555 1555 2.39 LINK OH TYR A 160 CA CA A1015 1555 1555 3.35 LINK OD1 ASP A 161 CD CD B1000 1655 1555 2.58 LINK OD2 ASP A 161 CD CD B1000 1655 1555 2.46 LINK OD1 ASP A 162 CD CD A1004 1555 1555 2.50 LINK OD2 ASP A 162 CD CD A1004 1555 1555 2.93 LINK OD1 ASP A 166 CD CD A1004 1555 1555 2.40 LINK OD2 ASP A 166 CD CD A1004 1555 1555 2.59 LINK CD CD A1001 CA CA A1015 1555 1555 2.29 LINK CD CD A1001 O HOH A1035 1555 1555 2.51 LINK CD CD A1001 OD1 ASP B 161 1555 1455 2.36 LINK CD CD A1001 OD2 ASP B 161 1555 1455 2.40 LINK CD CD A1002 OE1 GLU B 114 1555 1555 2.40 LINK CD CD A1002 OE2 GLU B 114 1555 1555 2.32 LINK CD CD A1002 O HOH B1215 1555 1555 1.75 LINK CD CD A1003 O HOH A1029 1555 1555 2.41 LINK CD CD A1004 O HOH A1183 1555 1555 2.58 LINK CA CA A1005 CA CA A1010 1555 1555 2.53 LINK CA CA A1005 O HOH A1044 1555 1555 2.78 LINK CA CA A1005 O HOH A1073 1555 1555 2.37 LINK CA CA A1005 O HOH A1162 1555 1555 2.66 LINK CA CA A1005 O THR B 17 1555 1555 2.41 LINK CA CA A1005 O HOH B1020 1555 1555 2.33 LINK CA CA A1005 O HOH B1039 1555 1555 2.77 LINK CA CA A1008 O HOH B1025 1555 1555 2.47 LINK CA CA A1009 O HOH A1058 1555 1555 2.79 LINK CA CA A1009 O HOH A1079 1555 1555 2.29 LINK CA CA A1009 O HOH A1185 1555 1555 3.34 LINK CA CA A1009 O HOH B1219 1555 1455 2.16 LINK CA CA A1010 O HOH A1073 1555 1555 2.95 LINK CA CA A1010 O HOH A1162 1555 1555 2.35 LINK CA CA A1010 O THR B 17 1555 1555 3.13 LINK CA CA A1013 O HOH A1124 1555 1555 2.68 LINK CA CA A1013 O HOH A1184 1555 1555 1.92 LINK CA CA A1014 O HOH A1048 1555 1555 2.55 LINK CA CA A1014 O HOH A1109 1555 1555 2.44 LINK CA CA A1015 O HOH A1064 1555 1555 2.96 LINK CA CA A1015 O HOH A1111 1555 1555 3.19 LINK CA CA A1015 OD2 ASP B 161 1555 1455 3.40 LINK CA CA A1016 O HOH A1123 1555 1555 3.05 LINK CA CA A1016 OG SER B 108 1555 1555 3.02 LINK CA CA A1016 O HOH B1022 1555 1555 3.02 LINK O HOH A1033 CA CA B1006 1555 1555 2.46 LINK O HOH A1072 CA CA B1012 1555 1555 3.24 LINK O HOH A1080 CA CA B1011 1655 1555 3.00 LINK O HOH A1138 CA CA B1006 1555 1555 2.04 LINK O HOH A1192 CA CA B1006 1555 1555 3.24 LINK O PHE B 16 CA CA B1012 1555 1555 3.39 LINK OE1 GLU B 29 CA CA B1006 1555 1555 2.37 LINK OE2 GLU B 29 CA CA B1006 1555 1555 2.44 LINK NE2 HIS B 55 CD CD B1000 1555 1555 2.19 LINK OD2 ASP B 58 CA CA B1007 1555 1555 2.33 LINK OD1 ASP B 58 CA CA B1007 1555 1555 2.65 LINK OD1 ASP B 151 CA CA B1017 1555 1555 2.59 LINK OD2 ASP B 151 CA CA B1017 1555 1555 2.29 LINK OH TYR B 160 CA CA B1011 1555 1555 3.24 LINK OD1 ASP B 162 CA CA B1018 1555 1555 2.37 LINK OD2 ASP B 162 CA CA B1018 1555 1555 3.04 LINK OD2 ASP B 166 CA CA B1018 1555 1555 2.43 LINK OD1 ASP B 166 CA CA B1018 1555 1555 2.47 LINK CD CD B1000 CA CA B1011 1555 1555 2.32 LINK CD CD B1000 O HOH B1036 1555 1555 2.71 LINK CA CA B1006 O HOH B1214 1555 1555 1.49 LINK CA CA B1007 O HOH B1089 1555 1555 2.90 LINK CA CA B1007 O HOH B1107 1555 1555 2.42 LINK CA CA B1007 O HOH B1122 1555 1555 2.39 LINK CA CA B1007 O HOH B1138 1555 1555 2.06 LINK CA CA B1011 O HOH B1066 1555 1555 3.22 LINK CA CA B1012 O HOH B1102 1555 1555 3.06 LINK CA CA B1017 O HOH B1181 1555 1555 2.39 LINK CA CA B1018 O HOH B1100 1555 1555 2.75 SITE 1 AC1 5 ASP A 161 HIS B 55 CA B1011 HOH B1036 SITE 2 AC1 5 HOH B1203 SITE 1 AC2 5 HIS A 55 CA A1015 HOH A1035 HOH A1186 SITE 2 AC2 5 ASP B 161 SITE 1 AC3 4 GLU A 14 GLU B 114 HOH B1208 HOH B1215 SITE 1 AC4 3 GLU A 113 LYS A 125 HOH A1029 SITE 1 AC5 4 LYS A 6 ASP A 162 ASP A 166 HOH A1183 SITE 1 AC6 8 THR A 17 CA A1010 HOH A1044 HOH A1073 SITE 2 AC6 8 HOH A1162 THR B 17 HOH B1020 HOH B1039 SITE 1 AC7 5 HOH A1033 HOH A1138 GLU B 29 HOH B1153 SITE 2 AC7 5 HOH B1214 SITE 1 AC8 5 ASP B 58 HOH B1089 HOH B1107 HOH B1122 SITE 2 AC8 5 HOH B1138 SITE 1 AC9 3 GLU A 29 HOH A1187 HOH B1025 SITE 1 BC1 4 ASP A 58 HOH A1058 HOH A1079 HOH B1219 SITE 1 BC2 6 THR A 17 GLY A 106 CA A1005 HOH A1073 SITE 2 BC2 6 HOH A1162 THR B 17 SITE 1 BC3 6 LYS A 62 ASP A 161 HOH A1080 HIS B 55 SITE 2 BC3 6 TYR B 160 CD B1000 SITE 1 BC4 5 SER A 108 PHE B 16 LEU B 28 GLU B 29 SITE 2 BC4 5 HOH B1102 SITE 1 BC5 3 ASP A 69 HOH A1124 HOH A1184 SITE 1 BC6 3 ASP A 78 HOH A1048 HOH A1109 SITE 1 BC7 6 HIS A 55 TYR A 160 CD A1001 HOH A1064 SITE 2 BC7 6 LYS B 62 ASP B 161 SITE 1 BC8 6 PRO A 15 PHE A 16 GLU A 29 HOH A1123 SITE 2 BC8 6 SER B 108 HOH B1022 SITE 1 BC9 2 ASP B 151 HOH B1181 SITE 1 CC1 3 ASP B 162 ASP B 166 HOH B1100 CRYST1 68.033 68.033 191.733 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014699 0.008486 0.000000 0.00000 SCALE2 0.000000 0.016973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005216 0.00000