HEADER SUGAR BINDING PROTEIN 23-NOV-04 1Y2V TITLE CRYSTAL STRUCTURE OF THE COMMON EDIBLE MUSHROOM (AGARICUS BISPORUS) TITLE 2 LECTIN IN COMPLEX WITH T-ANTIGEN CAVEAT 1Y2V NGA C 1 HAS WRONG CHIRALITY AT ATOM C1 NGA D 1 HAS WRONG CAVEAT 2 1Y2V CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGARICUS BISPORUS; SOURCE 3 ORGANISM_TAXID: 5341 KEYWDS ABL, AGARICUS BISPORUS, LECTIN, MUSHROOM, T-ANTIGEN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CARRIZO,S.CAPALDI,M.PERDUCA,F.J.IRAZOQUI,G.A.NORES,H.L.MONACO REVDAT 7 13-MAR-24 1Y2V 1 HETSYN REVDAT 6 29-JUL-20 1Y2V 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 11-OCT-17 1Y2V 1 REMARK REVDAT 4 13-JUL-11 1Y2V 1 VERSN REVDAT 3 24-FEB-09 1Y2V 1 VERSN REVDAT 2 22-MAR-05 1Y2V 1 JRNL REVDAT 1 21-DEC-04 1Y2V 0 JRNL AUTH M.E.CARRIZO,S.CAPALDI,M.PERDUCA,F.J.IRAZOQUI,G.A.NORES, JRNL AUTH 2 H.L.MONACO JRNL TITL THE ANTINEOPLASTIC LECTIN OF THE COMMON EDIBLE MUSHROOM JRNL TITL 2 (AGARICUS BISPORUS) HAS TWO BINDING SITES, EACH SPECIFIC FOR JRNL TITL 3 A DIFFERENT CONFIGURATION AT A SINGLE EPIMERIC HYDROXYL JRNL REF J.BIOL.CHEM. V. 280 10614 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15596442 JRNL DOI 10.1074/JBC.M411989200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.CARRIZO,F.J.IRAZOQUI,R.D.LARDONE,G.A.NORES,J.A.CURTINO, REMARK 1 AUTH 2 S.CAPALDI,M.PERDUCA,H.L.MONACO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDY OF THE COMMON REMARK 1 TITL 2 EDIBLE MUSHROOM (AGARICUS BISPORUS) LECTIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 718 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15039564 REMARK 1 DOI 10.1107/S0907444904001969 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2384 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3234 ; 1.255 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1828 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1029 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 0.495 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 0.933 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 974 ; 1.371 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 958 ; 2.195 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000031046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : XENOCS FOX 2D CU 12_38P REMARK 200 OPTICS : XENOCS FOX 2D CU 12_38P REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.54000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.54000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X, Y, 1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 91.86000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.54000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 23.34 -70.43 REMARK 500 THR A 82 -163.98 -125.93 REMARK 500 GLN A 88 71.96 -101.11 REMARK 500 PRO B 14 43.25 -82.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y2T RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 1Y2U RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH LACTO-N-BIOSE REMARK 900 RELATED ID: 1Y2W RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH T-ANTIGEN AND N-ACETYLGLUCOSAMINE, REMARK 900 ORTHORHOMBIC FORM REMARK 900 RELATED ID: 1Y2X RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH T-ANTIGEN AND N-ACETYLGLUCOSAMINE, REMARK 900 TETRAGONAL FORM DBREF 1Y2V A 2 133 GB 606960 AAA85813 2 133 DBREF 1Y2V B 2 133 GB 606960 AAA85813 2 133 SEQADV 1Y2V SER A 64 GB 606960 ILE 64 SEE REMARK 999 SEQADV 1Y2V ASP A 134 GB 606960 SEE REMARK 999 SEQADV 1Y2V ASN A 135 GB 606960 SEE REMARK 999 SEQADV 1Y2V LEU A 136 GB 606960 SEE REMARK 999 SEQADV 1Y2V LYS A 137 GB 606960 SEE REMARK 999 SEQADV 1Y2V ALA A 138 GB 606960 SEE REMARK 999 SEQADV 1Y2V ASN A 139 GB 606960 SEE REMARK 999 SEQADV 1Y2V LEU A 140 GB 606960 SEE REMARK 999 SEQADV 1Y2V ILE A 141 GB 606960 SEE REMARK 999 SEQADV 1Y2V ILE A 142 GB 606960 SEE REMARK 999 SEQADV 1Y2V GLY A 143 GB 606960 SEE REMARK 999 SEQADV 1Y2V SER B 64 GB 606960 ILE 64 SEE REMARK 999 SEQADV 1Y2V ASP B 134 GB 606960 SEE REMARK 999 SEQADV 1Y2V ASN B 135 GB 606960 SEE REMARK 999 SEQADV 1Y2V LEU B 136 GB 606960 SEE REMARK 999 SEQADV 1Y2V LYS B 137 GB 606960 SEE REMARK 999 SEQADV 1Y2V ALA B 138 GB 606960 SEE REMARK 999 SEQADV 1Y2V ASN B 139 GB 606960 SEE REMARK 999 SEQADV 1Y2V LEU B 140 GB 606960 SEE REMARK 999 SEQADV 1Y2V ILE B 141 GB 606960 SEE REMARK 999 SEQADV 1Y2V ILE B 142 GB 606960 SEE REMARK 999 SEQADV 1Y2V GLY B 143 GB 606960 SEE REMARK 999 SEQRES 1 A 142 THR TYR THR ILE SER ILE ARG VAL TYR GLN THR THR PRO SEQRES 2 A 142 LYS GLY PHE PHE ARG PRO VAL GLU ARG THR ASN TRP LYS SEQRES 3 A 142 TYR ALA ASN GLY GLY THR TRP ASP GLU VAL ARG GLY GLU SEQRES 4 A 142 TYR VAL LEU THR MET GLY GLY SER GLY THR SER GLY SER SEQRES 5 A 142 LEU ARG PHE VAL SER SER ASP THR ASP GLU SER PHE VAL SEQRES 6 A 142 ALA THR PHE GLY VAL HIS ASN TYR LYS ARG TRP CYS ASP SEQRES 7 A 142 ILE VAL THR ASN LEU THR ASN GLU GLN THR ALA LEU VAL SEQRES 8 A 142 ILE ASN GLN GLU TYR TYR GLY VAL PRO ILE ARG ASP GLN SEQRES 9 A 142 ALA ARG GLU ASN GLN LEU THR SER TYR ASN VAL ALA ASN SEQRES 10 A 142 ALA LYS GLY ARG ARG PHE ALA ILE GLU TYR THR VAL THR SEQRES 11 A 142 GLU GLY ASP ASN LEU LYS ALA ASN LEU ILE ILE GLY SEQRES 1 B 142 THR TYR THR ILE SER ILE ARG VAL TYR GLN THR THR PRO SEQRES 2 B 142 LYS GLY PHE PHE ARG PRO VAL GLU ARG THR ASN TRP LYS SEQRES 3 B 142 TYR ALA ASN GLY GLY THR TRP ASP GLU VAL ARG GLY GLU SEQRES 4 B 142 TYR VAL LEU THR MET GLY GLY SER GLY THR SER GLY SER SEQRES 5 B 142 LEU ARG PHE VAL SER SER ASP THR ASP GLU SER PHE VAL SEQRES 6 B 142 ALA THR PHE GLY VAL HIS ASN TYR LYS ARG TRP CYS ASP SEQRES 7 B 142 ILE VAL THR ASN LEU THR ASN GLU GLN THR ALA LEU VAL SEQRES 8 B 142 ILE ASN GLN GLU TYR TYR GLY VAL PRO ILE ARG ASP GLN SEQRES 9 B 142 ALA ARG GLU ASN GLN LEU THR SER TYR ASN VAL ALA ASN SEQRES 10 B 142 ALA LYS GLY ARG ARG PHE ALA ILE GLU TYR THR VAL THR SEQRES 11 B 142 GLU GLY ASP ASN LEU LYS ALA ASN LEU ILE ILE GLY HET NGA C 1 14 HET GAL C 2 11 HET NGA D 1 14 HET GAL D 2 11 HET SER A 146 7 HET SER B 146 7 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SER SERINE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 NGA 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 SER 2(C3 H7 N O3) FORMUL 7 HOH *90(H2 O) HELIX 1 1 THR A 89 TYR A 97 1 9 HELIX 2 2 VAL A 100 ASN A 109 1 10 HELIX 3 3 THR B 89 TYR B 97 1 9 HELIX 4 4 VAL B 100 ASN B 109 1 10 SHEET 1 A 6 GLY A 32 VAL A 37 0 SHEET 2 A 6 GLU A 40 MET A 45 -1 O VAL A 42 N ASP A 35 SHEET 3 A 6 TYR A 3 GLN A 11 -1 N ILE A 7 O TYR A 41 SHEET 4 A 6 ASN A 135 ILE A 142 1 O ILE A 142 N TYR A 10 SHEET 5 A 6 ARG A 123 VAL A 130 -1 N GLU A 127 O ASN A 139 SHEET 6 A 6 SER A 113 ALA A 117 -1 N TYR A 114 O ILE A 126 SHEET 1 B 4 ARG A 19 ASN A 25 0 SHEET 2 B 4 SER A 51 SER A 58 -1 O ARG A 55 N VAL A 21 SHEET 3 B 4 GLU A 63 HIS A 72 -1 O GLU A 63 N SER A 58 SHEET 4 B 4 LYS A 75 THR A 82 -1 O LYS A 75 N HIS A 72 SHEET 1 C 6 GLY B 32 VAL B 37 0 SHEET 2 C 6 GLU B 40 MET B 45 -1 O VAL B 42 N ASP B 35 SHEET 3 C 6 TYR B 3 GLN B 11 -1 N ILE B 7 O TYR B 41 SHEET 4 C 6 ASN B 135 ILE B 142 1 O ILE B 142 N TYR B 10 SHEET 5 C 6 ARG B 123 VAL B 130 -1 N ALA B 125 O ILE B 141 SHEET 6 C 6 SER B 113 ALA B 117 -1 N VAL B 116 O PHE B 124 SHEET 1 D 4 ARG B 19 ASN B 25 0 SHEET 2 D 4 SER B 51 SER B 58 -1 O ARG B 55 N VAL B 21 SHEET 3 D 4 GLU B 63 HIS B 72 -1 O GLU B 63 N SER B 58 SHEET 4 D 4 LYS B 75 THR B 82 -1 O LYS B 75 N HIS B 72 LINK OG SER A 146 C1 NGA C 1 1555 1555 1.36 LINK OG SER A 146 O5 NGA C 1 1555 1555 1.95 LINK OG SER B 146 C1 NGA D 1 1555 1555 1.36 LINK OG SER B 146 O5 NGA D 1 1555 1555 1.97 LINK O3 NGA C 1 C1 GAL C 2 1555 1555 1.45 LINK O3 NGA D 1 C1 GAL D 2 1555 1555 1.45 CRYST1 91.860 96.160 75.080 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013319 0.00000