HEADER OXIDOREDUCTASE 26-NOV-04 1Y3T TITLE CRYSTAL STRUCTURE OF YXAG, A DIOXYGENASE FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YXAG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YXAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B-YXAG KEYWDS BI CUPIN, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.GOPAL,L.L.MADAN,S.F.BETZ,A.A.KOSSIAKOFF REVDAT 3 23-AUG-23 1Y3T 1 REMARK LINK REVDAT 2 24-FEB-09 1Y3T 1 VERSN REVDAT 1 18-JAN-05 1Y3T 0 JRNL AUTH B.GOPAL,L.L.MADAN,S.F.BETZ,A.A.KOSSIAKOFF JRNL TITL THE CRYSTAL STRUCTURE OF A QUERCETIN 2,3-DIOXYGENASE FROM JRNL TITL 2 BACILLUS SUBTILIS SUGGESTS MODULATION OF ENZYME ACTIVITY BY JRNL TITL 3 A CHANGE IN THE METAL ION AT THE ACTIVE SITE(S) JRNL REF BIOCHEMISTRY V. 44 193 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15628860 JRNL DOI 10.1021/BI0484421 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 31547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -3.04000 REMARK 3 B33 (A**2) : 4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5136 ; 0.047 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4592 ; 0.130 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6962 ; 2.996 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10665 ; 2.130 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 9.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 758 ; 0.211 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5744 ; 0.084 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1050 ; 0.162 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1606 ; 0.295 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6065 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3861 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.284 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.313 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.023 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3165 ; 1.691 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5080 ; 2.799 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1971 ; 3.765 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1882 ; 5.693 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 334 2 REMARK 3 1 B 5 B 334 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 4802 ; 0.22 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 4802 ; 1.14 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000031080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.010 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GQG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM HEPES, PEG 400, AMMONIUM REMARK 280 SULFATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.20850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.21250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.20850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.21250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 MET A 335 REMARK 465 LYS A 336 REMARK 465 PRO A 337 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 MET B 335 REMARK 465 LYS B 336 REMARK 465 PRO B 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 GLU A 145 CB CG CD OE1 OE2 REMARK 470 SER A 148 CB OG REMARK 470 ASN A 149 CB CG OD1 ND2 REMARK 470 PHE A 152 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 328 OE2 REMARK 470 THR B 6 OG1 CG2 REMARK 470 GLU B 145 CB CG CD OE1 OE2 REMARK 470 SER B 148 CB OG REMARK 470 ASN B 149 CB CG OD1 ND2 REMARK 470 PHE B 152 CB CG CD1 CD2 CE1 CE2 CZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 148 REMARK 475 ASN A 149 REMARK 475 PHE A 152 REMARK 475 ASP A 165 REMARK 475 GLU A 166 REMARK 475 ALA A 167 REMARK 475 LYS A 168 REMARK 475 PRO A 169 REMARK 475 ALA A 170 REMARK 475 CYS A 171 REMARK 475 SER B 148 REMARK 475 ASN B 149 REMARK 475 ASP B 165 REMARK 475 GLU B 166 REMARK 475 ALA B 167 REMARK 475 LYS B 168 REMARK 475 PRO B 169 REMARK 475 ALA B 170 REMARK 475 CYS B 171 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 8 C O CB OG REMARK 480 SER B 8 C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 570 O HOH A 572 1.53 REMARK 500 O LEU A 164 N ASP A 165 1.57 REMARK 500 O GLU A 145 CG GLU A 146 1.61 REMARK 500 O LEU B 164 N ASP B 165 1.61 REMARK 500 OE2 GLU B 146 O HOH B 425 1.62 REMARK 500 O GLU B 145 CG GLU B 146 1.65 REMARK 500 O SER B 8 N LEU B 9 1.69 REMARK 500 O LEU B 164 O ASP B 165 1.69 REMARK 500 OE2 GLU B 150 O HOH B 510 1.69 REMARK 500 N ALA A 170 O HOH A 514 1.72 REMARK 500 CB ALA A 329 O HOH A 583 1.76 REMARK 500 O GLU B 146 O HOH B 461 1.78 REMARK 500 OE1 GLU B 241 O HOH B 572 1.79 REMARK 500 O LEU B 164 CA ASP B 165 1.80 REMARK 500 OE1 GLU B 146 O HOH B 425 1.80 REMARK 500 OE1 GLU A 146 O HOH A 480 1.86 REMARK 500 N SER A 148 O HOH A 515 1.87 REMARK 500 C VAL A 147 O HOH A 515 1.88 REMARK 500 CB GLU B 146 O HOH B 435 1.90 REMARK 500 O HOH B 444 O HOH B 583 1.91 REMARK 500 O ASN A 326 O HOH A 424 1.95 REMARK 500 O VAL B 147 O HOH B 569 1.97 REMARK 500 OE1 GLU A 328 O HOH A 571 2.00 REMARK 500 SG CYS B 5 O HOH B 553 2.01 REMARK 500 O VAL A 147 O HOH A 430 2.02 REMARK 500 CD GLU B 146 O HOH B 425 2.03 REMARK 500 OE1 GLU A 241 O HOH A 512 2.03 REMARK 500 OE2 GLU B 24 O HOH B 503 2.07 REMARK 500 OE2 GLU A 146 O HOH A 480 2.08 REMARK 500 CB GLU A 146 O HOH A 549 2.09 REMARK 500 O HOH A 566 O HOH A 567 2.09 REMARK 500 CE1 HIS A 110 CG HIS B 309 2.11 REMARK 500 CD GLU A 146 O HOH A 480 2.11 REMARK 500 O VAL A 162 O HOH A 412 2.11 REMARK 500 CB ALA B 329 O HOH B 575 2.15 REMARK 500 O HOH B 423 O HOH B 582 2.15 REMARK 500 O HOH B 571 O HOH B 574 2.16 REMARK 500 O HOH B 430 O HOH B 532 2.16 REMARK 500 CB ALA A 170 O HOH A 514 2.18 REMARK 500 O ASN B 326 O HOH B 577 2.18 REMARK 500 O PRO A 292 O HOH A 423 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 8 CA SER A 8 C 0.273 REMARK 500 SER A 8 C LEU A 9 N -0.406 REMARK 500 GLU A 12 CD GLU A 12 OE2 0.066 REMARK 500 TYR A 16 CE1 TYR A 16 CZ -0.088 REMARK 500 GLU A 24 CD GLU A 24 OE1 0.077 REMARK 500 GLU A 24 C GLU A 24 O 0.122 REMARK 500 VAL A 63 CB VAL A 63 CG2 -0.137 REMARK 500 LYS A 65 CG LYS A 65 CD 0.232 REMARK 500 LYS A 65 CD LYS A 65 CE 0.246 REMARK 500 LYS A 65 CE LYS A 65 NZ 0.177 REMARK 500 TYR A 94 CD1 TYR A 94 CE1 0.113 REMARK 500 HIS A 103 CA HIS A 103 CB -0.172 REMARK 500 HIS A 110 CE1 HIS A 110 NE2 0.239 REMARK 500 VAL A 115 CB VAL A 115 CG1 -0.161 REMARK 500 THR A 118 CB THR A 118 CG2 -0.257 REMARK 500 VAL A 123 CB VAL A 123 CG1 0.176 REMARK 500 VAL A 129 CB VAL A 129 CG2 0.157 REMARK 500 HIS A 139 CE1 HIS A 139 NE2 -0.078 REMARK 500 ALA A 143 CA ALA A 143 CB -0.138 REMARK 500 GLU A 146 CG GLU A 146 CD 0.126 REMARK 500 VAL A 147 CB VAL A 147 CG1 0.190 REMARK 500 GLU A 150 CD GLU A 150 OE2 0.071 REMARK 500 ARG A 151 N ARG A 151 CA 0.121 REMARK 500 PHE A 152 C ALA A 153 N -0.197 REMARK 500 ALA A 153 CA ALA A 153 CB 0.156 REMARK 500 GLU A 154 CG GLU A 154 CD 0.164 REMARK 500 VAL A 158 CB VAL A 158 CG2 -0.230 REMARK 500 ILE A 161 CB ILE A 161 CG2 -0.206 REMARK 500 PHE A 163 CG PHE A 163 CD1 0.116 REMARK 500 LEU A 164 C ASP A 165 N -0.424 REMARK 500 CYS A 171 CA CYS A 171 CB -0.187 REMARK 500 CYS A 171 C SER A 172 N -0.303 REMARK 500 VAL A 189 CB VAL A 189 CG2 0.176 REMARK 500 THR A 200 CB THR A 200 CG2 -0.208 REMARK 500 HIS A 205 CA HIS A 205 CB 0.146 REMARK 500 PHE A 218 CZ PHE A 218 CE2 0.151 REMARK 500 SER A 222 CB SER A 222 OG 0.103 REMARK 500 VAL A 232 C VAL A 232 O 0.115 REMARK 500 PHE A 243 CG PHE A 243 CD2 -0.102 REMARK 500 CYS A 245 CA CYS A 245 CB -0.096 REMARK 500 GLU A 247 CD GLU A 247 OE1 0.103 REMARK 500 GLU A 258 CD GLU A 258 OE2 -0.085 REMARK 500 ASP A 265 CG ASP A 265 OD2 0.153 REMARK 500 VAL A 274 CB VAL A 274 CG1 0.146 REMARK 500 HIS A 275 CA HIS A 275 CB -0.215 REMARK 500 SER A 276 CB SER A 276 OG -0.129 REMARK 500 VAL A 289 CA VAL A 289 CB -0.128 REMARK 500 PHE A 299 CZ PHE A 299 CE2 -0.126 REMARK 500 GLU A 307 CG GLU A 307 CD 0.091 REMARK 500 GLU A 307 CD GLU A 307 OE2 0.073 REMARK 500 REMARK 500 THIS ENTRY HAS 115 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 8 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU A 9 C - N - CA ANGL. DEV. = 28.4 DEGREES REMARK 500 MET A 36 CG - SD - CE ANGL. DEV. = -14.6 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 GLU A 79 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 HIS A 110 ND1 - CE1 - NE2 ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU A 146 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 151 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 151 CA - C - N ANGL. DEV. = 25.8 DEGREES REMARK 500 ARG A 151 O - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU A 164 CA - C - N ANGL. DEV. = 26.7 DEGREES REMARK 500 LEU A 164 O - C - N ANGL. DEV. = -27.9 DEGREES REMARK 500 ASP A 183 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 196 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 214 OG1 - CB - CG2 ANGL. DEV. = -23.3 DEGREES REMARK 500 GLU A 241 OE1 - CD - OE2 ANGL. DEV. = 9.6 DEGREES REMARK 500 HIS A 275 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 ASP A 304 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 304 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 321 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 331 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 SER B 8 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 SER B 8 CA - CB - OG ANGL. DEV. = -23.0 DEGREES REMARK 500 SER B 8 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 SER B 8 O - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 LEU B 9 C - N - CA ANGL. DEV. = 38.3 DEGREES REMARK 500 GLU B 22 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 44 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL B 63 CG1 - CB - CG2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP B 66 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP B 75 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 HIS B 103 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 HIS B 110 CG - ND1 - CE1 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS B 139 ND1 - CE1 - NE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 GLU B 146 OE1 - CD - OE2 ANGL. DEV. = -9.7 DEGREES REMARK 500 VAL B 147 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 SER B 148 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG B 151 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 LEU B 164 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 CYS B 171 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 144.30 55.42 REMARK 500 ASP A 44 19.51 59.45 REMARK 500 ILE A 90 -169.94 -121.54 REMARK 500 LYS A 120 -145.51 54.29 REMARK 500 VAL A 123 -48.73 -143.20 REMARK 500 SER A 144 59.38 -150.87 REMARK 500 GLU A 145 -150.06 -177.68 REMARK 500 GLU A 146 -16.55 171.92 REMARK 500 SER A 148 130.88 16.12 REMARK 500 ASN A 149 -69.51 103.60 REMARK 500 PHE A 152 -60.27 60.88 REMARK 500 LEU A 164 -64.85 -156.56 REMARK 500 ASP A 165 124.19 64.00 REMARK 500 GLU A 166 103.88 74.50 REMARK 500 LYS A 168 149.16 25.53 REMARK 500 CYS A 171 32.68 -14.74 REMARK 500 ASP A 255 70.02 24.15 REMARK 500 PRO A 292 178.83 -56.85 REMARK 500 ARG A 319 66.78 -100.43 REMARK 500 ALA A 329 81.03 -63.17 REMARK 500 SER B 8 151.95 71.69 REMARK 500 ILE B 90 -166.85 -128.01 REMARK 500 LYS B 120 -146.42 51.13 REMARK 500 VAL B 123 -43.65 -133.32 REMARK 500 SER B 144 51.31 -152.50 REMARK 500 GLU B 145 -153.28 -167.50 REMARK 500 GLU B 146 -18.15 163.32 REMARK 500 SER B 148 144.95 9.85 REMARK 500 ASN B 149 -65.70 98.43 REMARK 500 ARG B 151 48.89 -89.81 REMARK 500 PHE B 152 -23.91 -37.70 REMARK 500 LEU B 164 -38.63 -161.23 REMARK 500 ASP B 165 117.49 49.03 REMARK 500 GLU B 166 103.99 79.54 REMARK 500 LYS B 168 150.16 30.97 REMARK 500 CYS B 171 31.78 -17.76 REMARK 500 ASP B 255 68.59 15.68 REMARK 500 ALA B 329 85.09 -65.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 145 GLU A 146 124.08 REMARK 500 GLU A 146 VAL A 147 -129.12 REMARK 500 GLU A 150 ARG A 151 139.89 REMARK 500 PRO A 169 ALA A 170 148.05 REMARK 500 CYS A 171 SER A 172 147.71 REMARK 500 ILE A 327 GLU A 328 -146.78 REMARK 500 GLU B 145 GLU B 146 125.73 REMARK 500 GLU B 146 VAL B 147 -134.99 REMARK 500 GLU B 150 ARG B 151 138.88 REMARK 500 ARG B 151 PHE B 152 107.40 REMARK 500 CYS B 171 SER B 172 139.24 REMARK 500 ILE B 327 GLU B 328 -147.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 62 0.12 SIDE CHAIN REMARK 500 HIS A 64 0.12 SIDE CHAIN REMARK 500 HIS A 103 0.12 SIDE CHAIN REMARK 500 HIS A 110 0.14 SIDE CHAIN REMARK 500 HIS A 205 0.12 SIDE CHAIN REMARK 500 HIS A 234 0.13 SIDE CHAIN REMARK 500 HIS A 239 0.08 SIDE CHAIN REMARK 500 HIS A 275 0.11 SIDE CHAIN REMARK 500 HIS A 282 0.12 SIDE CHAIN REMARK 500 HIS B 62 0.10 SIDE CHAIN REMARK 500 HIS B 103 0.12 SIDE CHAIN REMARK 500 HIS B 110 0.16 SIDE CHAIN REMARK 500 HIS B 125 0.07 SIDE CHAIN REMARK 500 HIS B 139 0.17 SIDE CHAIN REMARK 500 HIS B 205 0.11 SIDE CHAIN REMARK 500 HIS B 268 0.11 SIDE CHAIN REMARK 500 HIS B 275 0.12 SIDE CHAIN REMARK 500 HIS B 309 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 150 -11.04 REMARK 500 LEU A 164 18.98 REMARK 500 SER B 8 -10.75 REMARK 500 GLU B 150 -10.28 REMARK 500 LEU B 164 11.70 REMARK 500 GLY B 293 26.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 64 NE2 81.1 REMARK 620 3 GLU A 69 OE1 151.8 70.9 REMARK 620 4 HIS A 103 NE2 93.2 103.7 89.8 REMARK 620 5 HOH A 469 O 88.8 110.7 104.4 145.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 234 NE2 REMARK 620 2 HIS A 236 NE2 72.6 REMARK 620 3 GLU A 241 OE1 136.3 64.4 REMARK 620 4 GLU A 241 OE2 159.9 112.7 49.9 REMARK 620 5 HIS A 275 NE2 92.1 113.3 97.7 67.9 REMARK 620 6 HOH A 445 O 122.0 156.4 101.2 60.8 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 NE2 REMARK 620 2 GLU B 69 OE1 61.3 REMARK 620 3 HIS B 103 NE2 118.2 111.6 REMARK 620 4 HOH B 452 O 91.5 89.2 149.1 REMARK 620 5 HOH B 525 O 148.1 90.6 84.6 72.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 234 NE2 REMARK 620 2 HIS B 236 NE2 70.5 REMARK 620 3 GLU B 241 OE1 136.1 70.7 REMARK 620 4 GLU B 241 OE2 169.9 118.5 54.0 REMARK 620 5 HIS B 275 NE2 89.1 110.1 123.3 83.6 REMARK 620 6 HOH B 426 O 102.6 114.5 76.0 78.1 135.2 REMARK 620 7 HOH B 458 O 111.3 172.6 104.9 60.4 77.3 58.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 402 DBREF 1Y3T A 1 337 UNP P42106 YXAG_BACSU 1 337 DBREF 1Y3T B 1 337 UNP P42106 YXAG_BACSU 1 337 SEQRES 1 A 337 MET LYS THR LEU CYS THR HIS SER LEU PRO LYS GLU LYS SEQRES 2 A 337 MET PRO TYR LEU LEU ARG SER GLY GLU GLY GLU ARG TYR SEQRES 3 A 337 LEU PHE GLY ARG GLN VAL ALA THR VAL MET ALA ASN GLY SEQRES 4 A 337 ARG SER THR GLY ASP LEU PHE GLU ILE VAL LEU LEU SER SEQRES 5 A 337 GLY GLY LYS GLY ASP ALA PHE PRO LEU HIS VAL HIS LYS SEQRES 6 A 337 ASP THR HIS GLU GLY ILE LEU VAL LEU ASP GLY LYS LEU SEQRES 7 A 337 GLU LEU THR LEU ASP GLY GLU ARG TYR LEU LEU ILE SER SEQRES 8 A 337 GLY ASP TYR ALA ASN ILE PRO ALA GLY THR PRO HIS SER SEQRES 9 A 337 TYR ARG MET GLN SER HIS ARG THR ARG LEU VAL SER TYR SEQRES 10 A 337 THR MET LYS GLY ASN VAL ALA HIS LEU TYR SER VAL ILE SEQRES 11 A 337 GLY ASN PRO TYR ASP HIS ALA GLU HIS PRO PRO TYR ALA SEQRES 12 A 337 SER GLU GLU VAL SER ASN GLU ARG PHE ALA GLU ALA ALA SEQRES 13 A 337 ALA VAL ALA THR ILE VAL PHE LEU ASP GLU ALA LYS PRO SEQRES 14 A 337 ALA CYS SER ALA LYS LEU ALA GLU LEU THR GLU LEU PRO SEQRES 15 A 337 ASP GLY ALA VAL PRO TYR VAL LEU GLU SER GLY GLU GLY SEQRES 16 A 337 ASP ARG LEU LEU THR GLY ASP GLN LEU HIS ARG ILE VAL SEQRES 17 A 337 ALA ALA GLN LYS ASN THR ASP GLY GLN PHE ILE VAL VAL SEQRES 18 A 337 SER SER GLU GLY PRO LYS GLY ASP ARG ILE VAL ASP HIS SEQRES 19 A 337 TYR HIS GLU TYR HIS THR GLU THR PHE TYR CYS LEU GLU SEQRES 20 A 337 GLY GLN MET THR MET TRP THR ASP GLY GLN GLU ILE GLN SEQRES 21 A 337 LEU ASN PRO GLY ASP PHE LEU HIS VAL PRO ALA ASN THR SEQRES 22 A 337 VAL HIS SER TYR ARG LEU ASP SER HIS TYR THR LYS MET SEQRES 23 A 337 VAL GLY VAL LEU VAL PRO GLY LEU PHE GLU PRO PHE PHE SEQRES 24 A 337 ARG THR LEU GLY ASP PRO TYR GLU GLY HIS ILE PHE PRO SEQRES 25 A 337 CYS LYS PRO GLN ALA LEU ARG PHE ASP ARG ILE LEU GLN SEQRES 26 A 337 ASN ILE GLU ALA LEU ASP LEU LYS VAL MET LYS PRO SEQRES 1 B 337 MET LYS THR LEU CYS THR HIS SER LEU PRO LYS GLU LYS SEQRES 2 B 337 MET PRO TYR LEU LEU ARG SER GLY GLU GLY GLU ARG TYR SEQRES 3 B 337 LEU PHE GLY ARG GLN VAL ALA THR VAL MET ALA ASN GLY SEQRES 4 B 337 ARG SER THR GLY ASP LEU PHE GLU ILE VAL LEU LEU SER SEQRES 5 B 337 GLY GLY LYS GLY ASP ALA PHE PRO LEU HIS VAL HIS LYS SEQRES 6 B 337 ASP THR HIS GLU GLY ILE LEU VAL LEU ASP GLY LYS LEU SEQRES 7 B 337 GLU LEU THR LEU ASP GLY GLU ARG TYR LEU LEU ILE SER SEQRES 8 B 337 GLY ASP TYR ALA ASN ILE PRO ALA GLY THR PRO HIS SER SEQRES 9 B 337 TYR ARG MET GLN SER HIS ARG THR ARG LEU VAL SER TYR SEQRES 10 B 337 THR MET LYS GLY ASN VAL ALA HIS LEU TYR SER VAL ILE SEQRES 11 B 337 GLY ASN PRO TYR ASP HIS ALA GLU HIS PRO PRO TYR ALA SEQRES 12 B 337 SER GLU GLU VAL SER ASN GLU ARG PHE ALA GLU ALA ALA SEQRES 13 B 337 ALA VAL ALA THR ILE VAL PHE LEU ASP GLU ALA LYS PRO SEQRES 14 B 337 ALA CYS SER ALA LYS LEU ALA GLU LEU THR GLU LEU PRO SEQRES 15 B 337 ASP GLY ALA VAL PRO TYR VAL LEU GLU SER GLY GLU GLY SEQRES 16 B 337 ASP ARG LEU LEU THR GLY ASP GLN LEU HIS ARG ILE VAL SEQRES 17 B 337 ALA ALA GLN LYS ASN THR ASP GLY GLN PHE ILE VAL VAL SEQRES 18 B 337 SER SER GLU GLY PRO LYS GLY ASP ARG ILE VAL ASP HIS SEQRES 19 B 337 TYR HIS GLU TYR HIS THR GLU THR PHE TYR CYS LEU GLU SEQRES 20 B 337 GLY GLN MET THR MET TRP THR ASP GLY GLN GLU ILE GLN SEQRES 21 B 337 LEU ASN PRO GLY ASP PHE LEU HIS VAL PRO ALA ASN THR SEQRES 22 B 337 VAL HIS SER TYR ARG LEU ASP SER HIS TYR THR LYS MET SEQRES 23 B 337 VAL GLY VAL LEU VAL PRO GLY LEU PHE GLU PRO PHE PHE SEQRES 24 B 337 ARG THR LEU GLY ASP PRO TYR GLU GLY HIS ILE PHE PRO SEQRES 25 B 337 CYS LYS PRO GLN ALA LEU ARG PHE ASP ARG ILE LEU GLN SEQRES 26 B 337 ASN ILE GLU ALA LEU ASP LEU LYS VAL MET LYS PRO HET FE A 401 1 HET FE A 402 1 HET FE B 401 1 HET FE B 402 1 HETNAM FE FE (III) ION FORMUL 3 FE 4(FE 3+) FORMUL 7 HOH *363(H2 O) HELIX 1 1 ASN A 38 GLY A 43 1 6 HELIX 2 2 ALA A 124 GLY A 131 1 8 HELIX 3 3 PHE A 152 ALA A 156 5 5 HELIX 4 4 ALA A 210 THR A 214 5 5 HELIX 5 5 GLU A 296 GLY A 303 1 8 HELIX 6 6 ARG A 319 ASN A 326 1 8 HELIX 7 7 ASN B 38 GLY B 43 1 6 HELIX 8 8 HIS B 125 GLY B 131 1 7 HELIX 9 9 PHE B 152 ALA B 157 1 6 HELIX 10 10 ALA B 210 THR B 214 5 5 HELIX 11 11 PHE B 295 GLY B 303 1 9 HELIX 12 12 ARG B 319 ASN B 326 1 8 SHEET 1 A 8 TYR A 16 LEU A 18 0 SHEET 2 A 8 PHE A 266 VAL A 269 -1 O PHE A 266 N LEU A 18 SHEET 3 A 8 THR A 240 GLU A 247 -1 N GLU A 241 O VAL A 269 SHEET 4 A 8 THR A 284 VAL A 291 -1 O VAL A 291 N THR A 240 SHEET 5 A 8 ILE A 219 GLY A 225 -1 N SER A 223 O MET A 286 SHEET 6 A 8 GLN A 203 ALA A 209 -1 N LEU A 204 O GLU A 224 SHEET 7 A 8 ASP A 196 THR A 200 -1 N THR A 200 O GLN A 203 SHEET 8 A 8 ASP A 304 PRO A 305 -1 O ASP A 304 N LEU A 199 SHEET 1 B 8 ASN A 132 PRO A 133 0 SHEET 2 B 8 GLU A 24 PHE A 28 -1 N LEU A 27 O ASN A 132 SHEET 3 B 8 GLN A 31 ALA A 37 -1 O GLN A 31 N PHE A 28 SHEET 4 B 8 PHE A 46 GLY A 53 -1 O LEU A 50 N THR A 34 SHEET 5 B 8 THR A 112 MET A 119 -1 O THR A 118 N GLU A 47 SHEET 6 B 8 GLU A 69 ASP A 75 -1 N GLY A 70 O TYR A 117 SHEET 7 B 8 TYR A 94 ILE A 97 -1 O ALA A 95 N ILE A 71 SHEET 8 B 8 TYR A 188 LEU A 190 -1 O LEU A 190 N TYR A 94 SHEET 1 C 6 THR A 160 ILE A 161 0 SHEET 2 C 6 ALA A 58 VAL A 63 -1 N VAL A 63 O THR A 160 SHEET 3 C 6 HIS A 103 MET A 107 -1 O HIS A 103 N HIS A 62 SHEET 4 C 6 LEU A 78 LEU A 82 -1 N GLU A 79 O ARG A 106 SHEET 5 C 6 GLU A 85 LEU A 89 -1 O LEU A 89 N LEU A 78 SHEET 6 C 6 LYS A 174 LEU A 175 1 O LYS A 174 N LEU A 88 SHEET 1 D 2 HIS A 234 TYR A 235 0 SHEET 2 D 2 ASP A 331 LEU A 332 -1 O ASP A 331 N TYR A 235 SHEET 1 E 3 GLN A 257 LEU A 261 0 SHEET 2 E 3 MET A 250 THR A 254 -1 N MET A 250 O LEU A 261 SHEET 3 E 3 HIS A 275 LEU A 279 -1 O ARG A 278 N THR A 251 SHEET 1 F 8 TYR B 16 LEU B 18 0 SHEET 2 F 8 PHE B 266 VAL B 269 -1 O PHE B 266 N LEU B 18 SHEET 3 F 8 GLU B 241 GLU B 247 -1 N GLU B 241 O VAL B 269 SHEET 4 F 8 THR B 284 LEU B 290 -1 O LYS B 285 N LEU B 246 SHEET 5 F 8 ILE B 219 GLY B 225 -1 N VAL B 221 O GLY B 288 SHEET 6 F 8 GLN B 203 ALA B 209 -1 N ARG B 206 O SER B 222 SHEET 7 F 8 ASP B 196 THR B 200 -1 N LEU B 198 O HIS B 205 SHEET 8 F 8 ASP B 304 PRO B 305 -1 O ASP B 304 N LEU B 199 SHEET 1 G 8 ASN B 132 PRO B 133 0 SHEET 2 G 8 GLU B 24 PHE B 28 -1 N LEU B 27 O ASN B 132 SHEET 3 G 8 GLN B 31 ALA B 37 -1 O ALA B 33 N TYR B 26 SHEET 4 G 8 PHE B 46 GLY B 53 -1 O LEU B 50 N THR B 34 SHEET 5 G 8 THR B 112 MET B 119 -1 O THR B 118 N GLU B 47 SHEET 6 G 8 GLU B 69 ASP B 75 -1 N GLY B 70 O TYR B 117 SHEET 7 G 8 TYR B 94 ILE B 97 -1 O ALA B 95 N ILE B 71 SHEET 8 G 8 TYR B 188 LEU B 190 -1 O LEU B 190 N TYR B 94 SHEET 1 H 6 THR B 160 ILE B 161 0 SHEET 2 H 6 ALA B 58 VAL B 63 -1 N VAL B 63 O THR B 160 SHEET 3 H 6 HIS B 103 MET B 107 -1 O HIS B 103 N HIS B 62 SHEET 4 H 6 LEU B 78 LEU B 82 -1 N GLU B 79 O ARG B 106 SHEET 5 H 6 GLU B 85 LEU B 89 -1 O GLU B 85 N LEU B 82 SHEET 6 H 6 LYS B 174 LEU B 175 1 O LYS B 174 N LEU B 88 SHEET 1 I 2 HIS B 234 TYR B 235 0 SHEET 2 I 2 ASP B 331 LEU B 332 -1 O ASP B 331 N TYR B 235 SHEET 1 J 3 GLN B 257 LEU B 261 0 SHEET 2 J 3 MET B 250 THR B 254 -1 N MET B 250 O LEU B 261 SHEET 3 J 3 HIS B 275 LEU B 279 -1 O ARG B 278 N THR B 251 LINK NE2 HIS A 62 FE FE A 401 1555 1555 2.55 LINK NE2 HIS A 64 FE FE A 401 1555 1555 2.29 LINK OE1 GLU A 69 FE FE A 401 1555 1555 2.18 LINK NE2 HIS A 103 FE FE A 401 1555 1555 2.39 LINK NE2 HIS A 234 FE FE A 402 1555 1555 2.37 LINK NE2 HIS A 236 FE FE A 402 1555 1555 2.28 LINK OE1 GLU A 241 FE FE A 402 1555 1555 2.60 LINK OE2 GLU A 241 FE FE A 402 1555 1555 2.76 LINK NE2 HIS A 275 FE FE A 402 1555 1555 2.32 LINK FE FE A 401 O HOH A 469 1555 1555 2.03 LINK FE FE A 402 O HOH A 445 1555 1555 2.47 LINK NE2 HIS B 64 FE FE B 401 1555 1555 2.40 LINK OE1 GLU B 69 FE FE B 401 1555 1555 2.16 LINK NE2 HIS B 103 FE FE B 401 1555 1555 2.26 LINK NE2 HIS B 234 FE FE B 402 1555 1555 2.56 LINK NE2 HIS B 236 FE FE B 402 1555 1555 2.19 LINK OE1 GLU B 241 FE FE B 402 1555 1555 2.58 LINK OE2 GLU B 241 FE FE B 402 1555 1555 2.58 LINK NE2 HIS B 275 FE FE B 402 1555 1555 2.26 LINK FE FE B 401 O HOH B 452 1555 1555 2.50 LINK FE FE B 401 O HOH B 525 1555 1555 2.23 LINK FE FE B 402 O HOH B 426 1555 1555 2.75 LINK FE FE B 402 O HOH B 458 1555 1555 2.45 CISPEP 1 ARG A 151 PHE A 152 0 6.47 CISPEP 2 VAL A 291 PRO A 292 0 -20.98 CISPEP 3 VAL B 291 PRO B 292 0 -9.07 SITE 1 AC1 5 HIS A 62 HIS A 64 GLU A 69 HIS A 103 SITE 2 AC1 5 HOH A 469 SITE 1 AC2 5 HIS A 234 HIS A 236 GLU A 241 HIS A 275 SITE 2 AC2 5 HOH A 445 SITE 1 AC3 6 HIS B 62 HIS B 64 GLU B 69 HIS B 103 SITE 2 AC3 6 HOH B 452 HOH B 525 SITE 1 AC4 6 HIS B 234 HIS B 236 GLU B 241 HIS B 275 SITE 2 AC4 6 HOH B 426 HOH B 458 CRYST1 128.417 128.425 51.189 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019535 0.00000