HEADER OXIDOREDUCTASE 01-DEC-04 1Y4K TITLE LIPOXYGENASE-1 (SOYBEAN) AT 100K, N694G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEED LIPOXYGENASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-1; COMPND 5 EC: 1.13.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: LOX1.1, LOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPOXYGENASE, DIOXYGENASE, METALLOPROTEIN, FATTY ACIDS, IRON, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRUSZCZ,E.SEGRAVES,T.R.HOLMAN,W.MINOR REVDAT 6 23-AUG-23 1Y4K 1 REMARK REVDAT 5 13-APR-22 1Y4K 1 AUTHOR JRNL REVDAT 4 20-OCT-21 1Y4K 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1Y4K 1 VERSN REVDAT 2 17-OCT-06 1Y4K 1 JRNL REVDAT 1 13-DEC-05 1Y4K 0 JRNL AUTH E.N.SEGRAVES,M.CHRUSZCZ,M.L.NEIDIG,V.RUDDAT,J.ZHOU, JRNL AUTH 2 A.T.WECKSLER,W.MINOR,E.I.SOLOMON,T.R.HOLMAN JRNL TITL KINETIC, SPECTROSCOPIC, AND STRUCTURAL INVESTIGATIONS OF THE JRNL TITL 2 SOYBEAN LIPOXYGENASE-1 FIRST-COORDINATION SPHERE MUTANT, JRNL TITL 3 ASN694GLY. JRNL REF BIOCHEMISTRY V. 45 10233 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16922498 JRNL DOI 10.1021/BI060577E REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 56381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 676 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6682 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6004 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9101 ; 1.678 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13967 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 828 ; 6.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;32.120 ;24.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1092 ;13.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1005 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7459 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1336 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1401 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6361 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3334 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3670 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 586 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4206 ; 1.198 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1654 ; 0.283 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6692 ; 1.595 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2810 ; 2.552 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2409 ; 3.645 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03106 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3339 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.077 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1F8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA ACETATE PH 5.2; 14% W/V PEG REMARK 280 3350, PH 5.20, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.41750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ILE A 117 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLN A 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 6 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 LEU A 32 CG CD1 CD2 REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 THR A 62 O REMARK 470 ILE A 67 CG2 CD1 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ILE A 93 CD1 REMARK 470 LYS A 135 CE NZ REMARK 470 LYS A 138 CD CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 LYS A 250 CE NZ REMARK 470 LYS A 314 CE NZ REMARK 470 ARG A 318 NE CZ NH1 NH2 REMARK 470 LYS A 368 CE NZ REMARK 470 LYS A 382 CD CE NZ REMARK 470 LYS A 640 CD CE NZ REMARK 470 LYS A 718 CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 -164.24 -75.34 REMARK 500 ALA A 52 5.99 -69.27 REMARK 500 SER A 70 -77.22 -66.79 REMARK 500 LEU A 71 118.65 -28.08 REMARK 500 THR A 73 89.05 -63.59 REMARK 500 CYS A 127 -62.11 -107.96 REMARK 500 SER A 198 138.98 -177.07 REMARK 500 ALA A 254 48.67 -84.56 REMARK 500 ILE A 265 -54.81 -122.56 REMARK 500 GLU A 294 -95.51 -106.98 REMARK 500 VAL A 312 -61.19 79.29 REMARK 500 ALA A 352 20.78 -146.16 REMARK 500 MET A 497 -60.95 -102.75 REMARK 500 HIS A 499 -75.17 -95.33 REMARK 500 THR A 503 -78.62 -111.01 REMARK 500 ASN A 534 -0.80 70.88 REMARK 500 ASN A 534 -0.80 69.05 REMARK 500 SER A 560 -135.25 52.95 REMARK 500 LYS A 561 -6.07 -59.90 REMARK 500 ASP A 594 90.09 -166.38 REMARK 500 SER A 687 -87.91 -108.50 REMARK 500 THR A 739 127.89 -36.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 840 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 499 NE2 REMARK 620 2 HIS A 504 NE2 99.0 REMARK 620 3 HIS A 690 NE2 97.5 104.8 REMARK 620 4 ILE A 839 OXT 163.2 96.2 85.3 REMARK 620 5 HOH A1002 O 94.5 82.3 164.9 80.6 REMARK 620 6 HOH A1003 O 78.3 167.6 87.5 85.3 85.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 840 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F8N RELATED DB: PDB REMARK 900 RELATED ID: 1FGM RELATED DB: PDB DBREF 1Y4K A 1 839 UNP P08170 LOX1_SOYBN 1 839 SEQADV 1Y4K GLY A 694 UNP P08170 ASN 694 ENGINEERED MUTATION SEQRES 1 A 839 MET PHE SER ALA GLY HIS LYS ILE LYS GLY THR VAL VAL SEQRES 2 A 839 LEU MET PRO LYS ASN GLU LEU GLU VAL ASN PRO ASP GLY SEQRES 3 A 839 SER ALA VAL ASP ASN LEU ASN ALA PHE LEU GLY ARG SER SEQRES 4 A 839 VAL SER LEU GLN LEU ILE SER ALA THR LYS ALA ASP ALA SEQRES 5 A 839 HIS GLY LYS GLY LYS VAL GLY LYS ASP THR PHE LEU GLU SEQRES 6 A 839 GLY ILE ASN THR SER LEU PRO THR LEU GLY ALA GLY GLU SEQRES 7 A 839 SER ALA PHE ASN ILE HIS PHE GLU TRP ASP GLY SER MET SEQRES 8 A 839 GLY ILE PRO GLY ALA PHE TYR ILE LYS ASN TYR MET GLN SEQRES 9 A 839 VAL GLU PHE PHE LEU LYS SER LEU THR LEU GLU ALA ILE SEQRES 10 A 839 SER ASN GLN GLY THR ILE ARG PHE VAL CYS ASN SER TRP SEQRES 11 A 839 VAL TYR ASN THR LYS LEU TYR LYS SER VAL ARG ILE PHE SEQRES 12 A 839 PHE ALA ASN HIS THR TYR VAL PRO SER GLU THR PRO ALA SEQRES 13 A 839 PRO LEU VAL SER TYR ARG GLU GLU GLU LEU LYS SER LEU SEQRES 14 A 839 ARG GLY ASN GLY THR GLY GLU ARG LYS GLU TYR ASP ARG SEQRES 15 A 839 ILE TYR ASP TYR ASP VAL TYR ASN ASP LEU GLY ASN PRO SEQRES 16 A 839 ASP LYS SER GLU LYS LEU ALA ARG PRO VAL LEU GLY GLY SEQRES 17 A 839 SER SER THR PHE PRO TYR PRO ARG ARG GLY ARG THR GLY SEQRES 18 A 839 ARG GLY PRO THR VAL THR ASP PRO ASN THR GLU LYS GLN SEQRES 19 A 839 GLY GLU VAL PHE TYR VAL PRO ARG ASP GLU ASN LEU GLY SEQRES 20 A 839 HIS LEU LYS SER LYS ASP ALA LEU GLU ILE GLY THR LYS SEQRES 21 A 839 SER LEU SER GLN ILE VAL GLN PRO ALA PHE GLU SER ALA SEQRES 22 A 839 PHE ASP LEU LYS SER THR PRO ILE GLU PHE HIS SER PHE SEQRES 23 A 839 GLN ASP VAL HIS ASP LEU TYR GLU GLY GLY ILE LYS LEU SEQRES 24 A 839 PRO ARG ASP VAL ILE SER THR ILE ILE PRO LEU PRO VAL SEQRES 25 A 839 ILE LYS GLU LEU TYR ARG THR ASP GLY GLN HIS ILE LEU SEQRES 26 A 839 LYS PHE PRO GLN PRO HIS VAL VAL GLN VAL SER GLN SER SEQRES 27 A 839 ALA TRP MET THR ASP GLU GLU PHE ALA ARG GLU MET ILE SEQRES 28 A 839 ALA GLY VAL ASN PRO CYS VAL ILE ARG GLY LEU GLU GLU SEQRES 29 A 839 PHE PRO PRO LYS SER ASN LEU ASP PRO ALA ILE TYR GLY SEQRES 30 A 839 ASP GLN SER SER LYS ILE THR ALA ASP SER LEU ASP LEU SEQRES 31 A 839 ASP GLY TYR THR MET ASP GLU ALA LEU GLY SER ARG ARG SEQRES 32 A 839 LEU PHE MET LEU ASP TYR HIS ASP ILE PHE MET PRO TYR SEQRES 33 A 839 VAL ARG GLN ILE ASN GLN LEU ASN SER ALA LYS THR TYR SEQRES 34 A 839 ALA THR ARG THR ILE LEU PHE LEU ARG GLU ASP GLY THR SEQRES 35 A 839 LEU LYS PRO VAL ALA ILE GLU LEU SER LEU PRO HIS SER SEQRES 36 A 839 ALA GLY ASP LEU SER ALA ALA VAL SER GLN VAL VAL LEU SEQRES 37 A 839 PRO ALA LYS GLU GLY VAL GLU SER THR ILE TRP LEU LEU SEQRES 38 A 839 ALA LYS ALA TYR VAL ILE VAL ASN ASP SER CYS TYR HIS SEQRES 39 A 839 GLN LEU MET SER HIS TRP LEU ASN THR HIS ALA ALA MET SEQRES 40 A 839 GLU PRO PHE VAL ILE ALA THR HIS ARG HIS LEU SER VAL SEQRES 41 A 839 LEU HIS PRO ILE TYR LYS LEU LEU THR PRO HIS TYR ARG SEQRES 42 A 839 ASN ASN MET ASN ILE ASN ALA LEU ALA ARG GLN SER LEU SEQRES 43 A 839 ILE ASN ALA ASN GLY ILE ILE GLU THR THR PHE LEU PRO SEQRES 44 A 839 SER LYS TYR SER VAL GLU MET SER SER ALA VAL TYR LYS SEQRES 45 A 839 ASN TRP VAL PHE THR ASP GLN ALA LEU PRO ALA ASP LEU SEQRES 46 A 839 ILE LYS ARG GLY VAL ALA ILE LYS ASP PRO SER THR PRO SEQRES 47 A 839 HIS GLY VAL ARG LEU LEU ILE GLU ASP TYR PRO TYR ALA SEQRES 48 A 839 ALA ASP GLY LEU GLU ILE TRP ALA ALA ILE LYS THR TRP SEQRES 49 A 839 VAL GLN GLU TYR VAL PRO LEU TYR TYR ALA ARG ASP ASP SEQRES 50 A 839 ASP VAL LYS ASN ASP SER GLU LEU GLN HIS TRP TRP LYS SEQRES 51 A 839 GLU ALA VAL GLU LYS GLY HIS GLY ASP LEU LYS ASP LYS SEQRES 52 A 839 PRO TRP TRP PRO LYS LEU GLN THR LEU GLU ASP LEU VAL SEQRES 53 A 839 GLU VAL CYS LEU ILE ILE ILE TRP ILE ALA SER ALA LEU SEQRES 54 A 839 HIS ALA ALA VAL GLY PHE GLY GLN TYR PRO TYR GLY GLY SEQRES 55 A 839 LEU ILE MET ASN ARG PRO THR ALA SER ARG ARG LEU LEU SEQRES 56 A 839 PRO GLU LYS GLY THR PRO GLU TYR GLU GLU MET ILE ASN SEQRES 57 A 839 ASN HIS GLU LYS ALA TYR LEU ARG THR ILE THR SER LYS SEQRES 58 A 839 LEU PRO THR LEU ILE SER LEU SER VAL ILE GLU ILE LEU SEQRES 59 A 839 SER THR HIS ALA SER ASP GLU VAL TYR LEU GLY GLN ARG SEQRES 60 A 839 ASP ASN PRO HIS TRP THR SER ASP SER LYS ALA LEU GLN SEQRES 61 A 839 ALA PHE GLN LYS PHE GLY ASN LYS LEU LYS GLU ILE GLU SEQRES 62 A 839 GLU LYS LEU VAL ARG ARG ASN ASN ASP PRO SER LEU GLN SEQRES 63 A 839 GLY ASN ARG LEU GLY PRO VAL GLN LEU PRO TYR THR LEU SEQRES 64 A 839 LEU TYR PRO SER SER GLU GLU GLY LEU THR PHE ARG GLY SEQRES 65 A 839 ILE PRO ASN SER ILE SER ILE HET FE2 A 840 1 HET ACT A2201 4 HET ACT A2202 4 HET EDO A2203 4 HETNAM FE2 FE (II) ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FE2 FE 2+ FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *676(H2 O) HELIX 1 1 ASN A 31 LEU A 36 5 6 HELIX 2 2 ASP A 88 GLY A 92 5 5 HELIX 3 3 ASN A 133 TYR A 137 5 5 HELIX 4 4 VAL A 150 THR A 154 5 5 HELIX 5 5 PRO A 155 PRO A 157 5 3 HELIX 6 6 LEU A 158 GLY A 171 1 14 HELIX 7 7 SER A 198 ALA A 202 5 5 HELIX 8 8 PRO A 241 ASN A 245 5 5 HELIX 9 9 LYS A 250 ASP A 253 5 4 HELIX 10 10 ALA A 254 ILE A 265 1 12 HELIX 11 11 ILE A 265 LEU A 276 1 12 HELIX 12 12 SER A 285 ASP A 291 1 7 HELIX 13 13 LEU A 292 GLU A 294 5 3 HELIX 14 14 PRO A 300 ILE A 308 1 9 HELIX 15 15 VAL A 312 TYR A 317 1 6 HELIX 16 16 PRO A 330 GLN A 334 5 5 HELIX 17 17 SER A 338 MET A 341 5 4 HELIX 18 18 THR A 342 GLY A 353 1 12 HELIX 19 19 ASP A 372 GLY A 377 1 6 HELIX 20 20 THR A 384 LEU A 388 5 5 HELIX 21 21 THR A 394 SER A 401 1 8 HELIX 22 22 TYR A 409 GLN A 422 1 14 HELIX 23 23 GLU A 472 MET A 497 1 26 HELIX 24 24 THR A 503 LEU A 518 1 16 HELIX 25 25 HIS A 522 THR A 529 1 8 HELIX 26 26 PRO A 530 ARG A 533 5 4 HELIX 27 27 ASN A 534 LEU A 546 1 13 HELIX 28 28 GLY A 551 PHE A 557 1 7 HELIX 29 29 PRO A 559 LYS A 561 5 3 HELIX 30 30 TYR A 562 LYS A 572 1 11 HELIX 31 31 ASN A 573 TRP A 574 5 2 HELIX 32 32 VAL A 575 GLN A 579 5 5 HELIX 33 33 ALA A 580 ARG A 588 1 9 HELIX 34 34 TYR A 608 TYR A 633 1 26 HELIX 35 35 ARG A 635 ASN A 641 1 7 HELIX 36 36 ASP A 642 LYS A 655 1 14 HELIX 37 37 HIS A 657 LYS A 661 5 5 HELIX 38 38 THR A 671 SER A 687 1 17 HELIX 39 39 SER A 687 PHE A 695 1 9 HELIX 40 40 GLY A 696 GLY A 702 1 7 HELIX 41 41 THR A 720 ASN A 729 1 10 HELIX 42 42 ASN A 729 ILE A 738 1 10 HELIX 43 43 SER A 740 SER A 755 1 16 HELIX 44 44 ASP A 775 ASP A 802 1 28 HELIX 45 45 LEU A 805 LEU A 810 1 6 SHEET 1 A 5 GLY A 66 ASN A 68 0 SHEET 2 A 5 SER A 79 GLU A 86 -1 O ASN A 82 N GLY A 66 SHEET 3 A 5 LYS A 7 PRO A 16 -1 N GLY A 10 O ILE A 83 SHEET 4 A 5 PHE A 107 LEU A 114 -1 O PHE A 108 N MET A 15 SHEET 5 A 5 ILE A 123 VAL A 131 -1 O VAL A 131 N PHE A 107 SHEET 1 B 4 GLY A 56 VAL A 58 0 SHEET 2 B 4 VAL A 40 ALA A 50 -1 N LYS A 49 O LYS A 57 SHEET 3 B 4 PRO A 94 ASN A 101 -1 O LYS A 100 N SER A 41 SHEET 4 B 4 ARG A 141 PHE A 144 -1 O PHE A 143 N PHE A 97 SHEET 1 C 2 TYR A 186 ASP A 187 0 SHEET 2 C 2 ARG A 217 GLY A 218 -1 O ARG A 217 N ASP A 187 SHEET 1 D 3 ILE A 297 LYS A 298 0 SHEET 2 D 3 ILE A 324 LYS A 326 -1 O LEU A 325 N ILE A 297 SHEET 3 D 3 ARG A 318 THR A 319 -1 N ARG A 318 O LYS A 326 SHEET 1 E 5 ARG A 360 GLY A 361 0 SHEET 2 E 5 LEU A 404 ASP A 408 -1 O MET A 406 N ARG A 360 SHEET 3 E 5 ALA A 430 LEU A 437 -1 O LEU A 435 N PHE A 405 SHEET 4 E 5 LEU A 443 SER A 451 -1 O VAL A 446 N ILE A 434 SHEET 5 E 5 GLN A 465 VAL A 467 -1 O GLN A 465 N LEU A 450 SHEET 1 F 2 ALA A 591 LYS A 593 0 SHEET 2 F 2 VAL A 601 LEU A 603 -1 O ARG A 602 N ILE A 592 LINK NE2 HIS A 499 FE FE2 A 840 1555 1555 2.35 LINK NE2 HIS A 504 FE FE2 A 840 1555 1555 2.19 LINK NE2 HIS A 690 FE FE2 A 840 1555 1555 2.31 LINK OXT ILE A 839 FE FE2 A 840 1555 1555 2.20 LINK FE FE2 A 840 O HOH A1002 1555 1555 2.27 LINK FE FE2 A 840 O HOH A1003 1555 1555 2.14 CISPEP 1 PHE A 365 PRO A 366 0 -8.93 SITE 1 AC1 6 HIS A 499 HIS A 504 HIS A 690 ILE A 839 SITE 2 AC1 6 HOH A1002 HOH A1003 SITE 1 AC2 5 ILE A 412 VAL A 570 HOH A1161 HOH A1344 SITE 2 AC2 5 HOH A1510 SITE 1 AC3 5 ASP A 291 GLY A 295 GLY A 296 LYS A 298 SITE 2 AC3 5 HOH A1260 SITE 1 AC4 10 PHE A 346 LYS A 483 ALA A 484 ILE A 487 SITE 2 AC4 10 MET A 705 ASN A 706 PRO A 708 TYR A 734 SITE 3 AC4 10 HOH A1043 HOH A1318 CRYST1 93.884 92.835 49.435 90.00 90.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010651 0.000000 0.000122 0.00000 SCALE2 0.000000 0.010772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020230 0.00000