HEADER LYASE 03-DEC-04 1Y60 TITLE STRUCTURE OF THE TETRAHYDROMETHANOPTERIN DEPENDENT FORMALDEHYDE- TITLE 2 ACTIVATING ENZYME (FAE) FROM METHYLOBACTERIUM EXTORQUENS AM1 WITH TITLE 3 BOUND 5,10-METHYLENE TETRAHYDROMETHANOPTERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMALDEHYDE-ACTIVATING ENZYME FAE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: COMPLEXED WITH PTERIN-RELATED COFACTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS; SOURCE 3 ORGANISM_TAXID: 272630; SOURCE 4 STRAIN: AM1; SOURCE 5 GENE: FAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS PENTAMER; BETA-ALPHA-BETA LEFT HANDED CROSSOVER; KEYWDS 2 TETRAHYDROMETHANOPTERIN-BINDING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ACHARYA,M.GOENRICH,C.H.HAGEMEIER,U.DEMMER,J.A.VORHOLT,R.K.THAUER, AUTHOR 2 U.ERMLER REVDAT 5 23-AUG-23 1Y60 1 REMARK REVDAT 4 13-JUL-11 1Y60 1 VERSN REVDAT 3 24-FEB-09 1Y60 1 VERSN REVDAT 2 26-APR-05 1Y60 1 JRNL REVDAT 1 11-JAN-05 1Y60 0 JRNL AUTH P.ACHARYA,M.GOENRICH,C.H.HAGEMEIER,U.DEMMER,J.A.VORHOLT, JRNL AUTH 2 R.K.THAUER,U.ERMLER JRNL TITL HOW AN ENZYME BINDS THE C1-CARRIER TETRAHYDROMETHANOPTERIN: JRNL TITL 2 STRUCTURE OF THE TETRAHYDROMETHANOPTERIN DEPENDENT JRNL TITL 3 FORMALDEHYDE-ACTIVATING ENZYME (FAE) FROM METHYLOBACTERIUM JRNL TITL 4 EXTORQUENS AM1 JRNL REF J.BIOL.CHEM. V. 280 13712 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15632161 JRNL DOI 10.1074/JBC.M412320200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 108436.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 57191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2967 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8083 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 424 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 225 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.76000 REMARK 3 B22 (A**2) : -9.77000 REMARK 3 B33 (A**2) : -8.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.970 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.660 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 53.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : H4M.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : H4M.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939270 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: FORMALDEHYDE-ACTIVATING ENZYME FROM REMARK 200 METHYLOBACTERIUM EXTORQUENS AM1 PDB ID 1Y5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/NAOH PH 7.5, 20% (W/V) REMARK 280 POLYETHYLENEGLYCOL 10,000, 5 MM TETRAHYDROMETHANOPTERIN (H4MPT), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.29500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 170 REMARK 465 ALA B 1170 REMARK 465 ALA C 2170 REMARK 465 ALA E 4170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B1169 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 160 O HOH A 344 2.14 REMARK 500 O ALA C 2002 OE2 GLU C 2108 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 1139 O HOH E 421 2545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C2011 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO D3165 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 143.03 -170.92 REMARK 500 ALA A 125 -35.07 -138.30 REMARK 500 ALA A 167 -70.97 -119.71 REMARK 500 ALA A 168 132.33 68.80 REMARK 500 LYS B1003 -71.72 120.33 REMARK 500 ALA B1012 142.57 -171.58 REMARK 500 ALA B1125 -35.77 -139.68 REMARK 500 LYS C2003 -49.00 98.65 REMARK 500 ALA C2125 -35.33 -137.83 REMARK 500 LYS D3003 -71.49 97.67 REMARK 500 ALA D3125 -34.14 -141.01 REMARK 500 ALA E4012 141.55 -170.50 REMARK 500 ALA E4125 -32.69 -139.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 H4M B 997 REMARK 610 H4M B 998 REMARK 610 H4M C 995 REMARK 610 H4M D 994 REMARK 610 H4M E 996 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4M D 994 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4M C 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4M E 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4M B 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4M B 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y5Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO FORM DBREF 1Y60 A 2 170 UNP Q9FA38 FAE_METEX 1 169 DBREF 1Y60 B 1002 1170 UNP Q9FA38 FAE_METEX 1 169 DBREF 1Y60 C 2002 2170 UNP Q9FA38 FAE_METEX 1 169 DBREF 1Y60 D 3002 3170 UNP Q9FA38 FAE_METEX 1 169 DBREF 1Y60 E 4002 4170 UNP Q9FA38 FAE_METEX 1 169 SEQRES 1 A 169 ALA LYS ILE THR LYS VAL GLN VAL GLY GLU ALA LEU VAL SEQRES 2 A 169 GLY ASP GLY ASN GLU VAL ALA HIS ILE ASP LEU ILE ILE SEQRES 3 A 169 GLY PRO ARG GLY SER PRO ALA GLU THR ALA PHE CYS ASN SEQRES 4 A 169 GLY LEU VAL ASN ASN LYS HIS GLY PHE THR SER LEU LEU SEQRES 5 A 169 ALA VAL ILE ALA PRO ASN LEU PRO CYS LYS PRO ASN THR SEQRES 6 A 169 LEU MET PHE ASN LYS VAL THR ILE ASN ASP ALA ARG GLN SEQRES 7 A 169 ALA VAL GLN MET PHE GLY PRO ALA GLN HIS GLY VAL ALA SEQRES 8 A 169 MET ALA VAL GLN ASP ALA VAL ALA GLU GLY ILE ILE PRO SEQRES 9 A 169 ALA ASP GLU ALA ASP ASP LEU TYR VAL LEU VAL GLY VAL SEQRES 10 A 169 PHE ILE HIS TRP GLU ALA ALA ASP ASP ALA LYS ILE GLN SEQRES 11 A 169 LYS TYR ASN TYR GLU ALA THR LYS LEU SER ILE GLN ARG SEQRES 12 A 169 ALA VAL ASN GLY GLU PRO LYS ALA SER VAL VAL THR GLU SEQRES 13 A 169 GLN ARG LYS SER ALA THR HIS PRO PHE ALA ALA ASN ALA SEQRES 1 B 169 ALA LYS ILE THR LYS VAL GLN VAL GLY GLU ALA LEU VAL SEQRES 2 B 169 GLY ASP GLY ASN GLU VAL ALA HIS ILE ASP LEU ILE ILE SEQRES 3 B 169 GLY PRO ARG GLY SER PRO ALA GLU THR ALA PHE CYS ASN SEQRES 4 B 169 GLY LEU VAL ASN ASN LYS HIS GLY PHE THR SER LEU LEU SEQRES 5 B 169 ALA VAL ILE ALA PRO ASN LEU PRO CYS LYS PRO ASN THR SEQRES 6 B 169 LEU MET PHE ASN LYS VAL THR ILE ASN ASP ALA ARG GLN SEQRES 7 B 169 ALA VAL GLN MET PHE GLY PRO ALA GLN HIS GLY VAL ALA SEQRES 8 B 169 MET ALA VAL GLN ASP ALA VAL ALA GLU GLY ILE ILE PRO SEQRES 9 B 169 ALA ASP GLU ALA ASP ASP LEU TYR VAL LEU VAL GLY VAL SEQRES 10 B 169 PHE ILE HIS TRP GLU ALA ALA ASP ASP ALA LYS ILE GLN SEQRES 11 B 169 LYS TYR ASN TYR GLU ALA THR LYS LEU SER ILE GLN ARG SEQRES 12 B 169 ALA VAL ASN GLY GLU PRO LYS ALA SER VAL VAL THR GLU SEQRES 13 B 169 GLN ARG LYS SER ALA THR HIS PRO PHE ALA ALA ASN ALA SEQRES 1 C 169 ALA LYS ILE THR LYS VAL GLN VAL GLY GLU ALA LEU VAL SEQRES 2 C 169 GLY ASP GLY ASN GLU VAL ALA HIS ILE ASP LEU ILE ILE SEQRES 3 C 169 GLY PRO ARG GLY SER PRO ALA GLU THR ALA PHE CYS ASN SEQRES 4 C 169 GLY LEU VAL ASN ASN LYS HIS GLY PHE THR SER LEU LEU SEQRES 5 C 169 ALA VAL ILE ALA PRO ASN LEU PRO CYS LYS PRO ASN THR SEQRES 6 C 169 LEU MET PHE ASN LYS VAL THR ILE ASN ASP ALA ARG GLN SEQRES 7 C 169 ALA VAL GLN MET PHE GLY PRO ALA GLN HIS GLY VAL ALA SEQRES 8 C 169 MET ALA VAL GLN ASP ALA VAL ALA GLU GLY ILE ILE PRO SEQRES 9 C 169 ALA ASP GLU ALA ASP ASP LEU TYR VAL LEU VAL GLY VAL SEQRES 10 C 169 PHE ILE HIS TRP GLU ALA ALA ASP ASP ALA LYS ILE GLN SEQRES 11 C 169 LYS TYR ASN TYR GLU ALA THR LYS LEU SER ILE GLN ARG SEQRES 12 C 169 ALA VAL ASN GLY GLU PRO LYS ALA SER VAL VAL THR GLU SEQRES 13 C 169 GLN ARG LYS SER ALA THR HIS PRO PHE ALA ALA ASN ALA SEQRES 1 D 169 ALA LYS ILE THR LYS VAL GLN VAL GLY GLU ALA LEU VAL SEQRES 2 D 169 GLY ASP GLY ASN GLU VAL ALA HIS ILE ASP LEU ILE ILE SEQRES 3 D 169 GLY PRO ARG GLY SER PRO ALA GLU THR ALA PHE CYS ASN SEQRES 4 D 169 GLY LEU VAL ASN ASN LYS HIS GLY PHE THR SER LEU LEU SEQRES 5 D 169 ALA VAL ILE ALA PRO ASN LEU PRO CYS LYS PRO ASN THR SEQRES 6 D 169 LEU MET PHE ASN LYS VAL THR ILE ASN ASP ALA ARG GLN SEQRES 7 D 169 ALA VAL GLN MET PHE GLY PRO ALA GLN HIS GLY VAL ALA SEQRES 8 D 169 MET ALA VAL GLN ASP ALA VAL ALA GLU GLY ILE ILE PRO SEQRES 9 D 169 ALA ASP GLU ALA ASP ASP LEU TYR VAL LEU VAL GLY VAL SEQRES 10 D 169 PHE ILE HIS TRP GLU ALA ALA ASP ASP ALA LYS ILE GLN SEQRES 11 D 169 LYS TYR ASN TYR GLU ALA THR LYS LEU SER ILE GLN ARG SEQRES 12 D 169 ALA VAL ASN GLY GLU PRO LYS ALA SER VAL VAL THR GLU SEQRES 13 D 169 GLN ARG LYS SER ALA THR HIS PRO PHE ALA ALA ASN ALA SEQRES 1 E 169 ALA LYS ILE THR LYS VAL GLN VAL GLY GLU ALA LEU VAL SEQRES 2 E 169 GLY ASP GLY ASN GLU VAL ALA HIS ILE ASP LEU ILE ILE SEQRES 3 E 169 GLY PRO ARG GLY SER PRO ALA GLU THR ALA PHE CYS ASN SEQRES 4 E 169 GLY LEU VAL ASN ASN LYS HIS GLY PHE THR SER LEU LEU SEQRES 5 E 169 ALA VAL ILE ALA PRO ASN LEU PRO CYS LYS PRO ASN THR SEQRES 6 E 169 LEU MET PHE ASN LYS VAL THR ILE ASN ASP ALA ARG GLN SEQRES 7 E 169 ALA VAL GLN MET PHE GLY PRO ALA GLN HIS GLY VAL ALA SEQRES 8 E 169 MET ALA VAL GLN ASP ALA VAL ALA GLU GLY ILE ILE PRO SEQRES 9 E 169 ALA ASP GLU ALA ASP ASP LEU TYR VAL LEU VAL GLY VAL SEQRES 10 E 169 PHE ILE HIS TRP GLU ALA ALA ASP ASP ALA LYS ILE GLN SEQRES 11 E 169 LYS TYR ASN TYR GLU ALA THR LYS LEU SER ILE GLN ARG SEQRES 12 E 169 ALA VAL ASN GLY GLU PRO LYS ALA SER VAL VAL THR GLU SEQRES 13 E 169 GLN ARG LYS SER ALA THR HIS PRO PHE ALA ALA ASN ALA HET H4M B 997 45 HET H4M B 998 45 HET H4M C 995 45 HET H4M D 994 45 HET H4M E 996 45 HETNAM H4M 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN FORMUL 6 H4M 5(C31 H45 N6 O16 P) FORMUL 11 HOH *492(H2 O) HELIX 1 1 ASP A 16 VAL A 20 5 5 HELIX 2 2 SER A 32 ASN A 44 1 13 HELIX 3 3 ASP A 76 PHE A 84 1 9 HELIX 4 4 GLY A 85 GLU A 101 1 17 HELIX 5 5 GLU A 108 ASP A 110 5 3 HELIX 6 6 ASP A 126 ASN A 147 1 22 HELIX 7 7 LYS A 151 ARG A 159 1 9 HELIX 8 8 LYS A 160 ALA A 162 5 3 HELIX 9 9 ASP B 1016 VAL B 1020 5 5 HELIX 10 10 SER B 1032 ASN B 1044 1 13 HELIX 11 11 ASP B 1076 PHE B 1084 1 9 HELIX 12 12 GLY B 1085 GLU B 1101 1 17 HELIX 13 13 GLU B 1108 ASP B 1110 5 3 HELIX 14 14 ASP B 1126 ASN B 1147 1 22 HELIX 15 15 LYS B 1151 ARG B 1159 1 9 HELIX 16 16 LYS B 1160 ALA B 1162 5 3 HELIX 17 17 ASP C 2016 VAL C 2020 5 5 HELIX 18 18 SER C 2032 ASN C 2044 1 13 HELIX 19 19 ASP C 2076 PHE C 2084 1 9 HELIX 20 20 GLY C 2085 GLU C 2101 1 17 HELIX 21 21 GLU C 2108 ASP C 2110 5 3 HELIX 22 22 ASP C 2126 ASN C 2147 1 22 HELIX 23 23 LYS C 2151 ARG C 2159 1 9 HELIX 24 24 LYS C 2160 ALA C 2162 5 3 HELIX 25 25 ASP D 3016 VAL D 3020 5 5 HELIX 26 26 SER D 3032 ASN D 3044 1 13 HELIX 27 27 ASP D 3076 PHE D 3084 1 9 HELIX 28 28 GLY D 3085 GLU D 3101 1 17 HELIX 29 29 GLU D 3108 ASP D 3110 5 3 HELIX 30 30 ASP D 3126 ASN D 3147 1 22 HELIX 31 31 LYS D 3151 ARG D 3159 1 9 HELIX 32 32 LYS D 3160 ALA D 3162 5 3 HELIX 33 33 ASP E 4016 VAL E 4020 5 5 HELIX 34 34 SER E 4032 ASN E 4044 1 13 HELIX 35 35 ASP E 4076 PHE E 4084 1 9 HELIX 36 36 GLY E 4085 GLU E 4101 1 17 HELIX 37 37 GLU E 4108 ASP E 4110 5 3 HELIX 38 38 ASP E 4126 ASN E 4147 1 22 HELIX 39 39 LYS E 4151 ARG E 4159 1 9 HELIX 40 40 LYS E 4160 ALA E 4162 5 3 SHEET 1 A 5 GLN A 8 VAL A 14 0 SHEET 2 A 5 ALA A 21 PRO A 29 -1 O LEU A 25 N GLY A 10 SHEET 3 A 5 LEU A 112 VAL A 118 -1 O LEU A 115 N ILE A 26 SHEET 4 A 5 ASN A 65 ASN A 70 1 N LEU A 67 O VAL A 116 SHEET 5 A 5 LEU A 52 LEU A 53 -1 N LEU A 52 O MET A 68 SHEET 1 B 2 VAL A 55 ALA A 57 0 SHEET 2 B 2 LEU A 60 PRO A 61 -1 O LEU A 60 N ALA A 57 SHEET 1 C 5 GLN B1008 VAL B1014 0 SHEET 2 C 5 ALA B1021 PRO B1029 -1 O LEU B1025 N GLY B1010 SHEET 3 C 5 LEU B1112 VAL B1118 -1 O GLY B1117 N ASP B1024 SHEET 4 C 5 ASN B1065 ASN B1070 1 N LEU B1067 O VAL B1116 SHEET 5 C 5 LEU B1052 LEU B1053 -1 N LEU B1052 O MET B1068 SHEET 1 D 2 VAL B1055 ALA B1057 0 SHEET 2 D 2 LEU B1060 PRO B1061 -1 O LEU B1060 N ALA B1057 SHEET 1 E 5 GLN C2008 VAL C2014 0 SHEET 2 E 5 ALA C2021 PRO C2029 -1 O LEU C2025 N GLY C2010 SHEET 3 E 5 LEU C2112 VAL C2118 -1 O GLY C2117 N ASP C2024 SHEET 4 E 5 ASN C2065 ASN C2070 1 N LEU C2067 O VAL C2116 SHEET 5 E 5 LEU C2052 LEU C2053 -1 N LEU C2052 O MET C2068 SHEET 1 F 2 VAL C2055 ALA C2057 0 SHEET 2 F 2 LEU C2060 PRO C2061 -1 O LEU C2060 N ALA C2057 SHEET 1 G 5 GLN D3008 VAL D3014 0 SHEET 2 G 5 ALA D3021 PRO D3029 -1 O LEU D3025 N GLY D3010 SHEET 3 G 5 LEU D3112 VAL D3118 -1 O LEU D3115 N ILE D3026 SHEET 4 G 5 ASN D3065 ASN D3070 1 N LEU D3067 O VAL D3116 SHEET 5 G 5 LEU D3052 LEU D3053 -1 N LEU D3052 O MET D3068 SHEET 1 H 2 VAL D3055 ALA D3057 0 SHEET 2 H 2 LEU D3060 PRO D3061 -1 O LEU D3060 N ALA D3057 SHEET 1 I 5 GLN E4008 VAL E4014 0 SHEET 2 I 5 ALA E4021 PRO E4029 -1 O LEU E4025 N GLY E4010 SHEET 3 I 5 LEU E4112 VAL E4118 -1 O GLY E4117 N ASP E4024 SHEET 4 I 5 ASN E4065 ASN E4070 1 N LEU E4067 O VAL E4116 SHEET 5 I 5 LEU E4052 LEU E4053 -1 N LEU E4052 O MET E4068 SHEET 1 J 2 VAL E4055 ALA E4057 0 SHEET 2 J 2 LEU E4060 PRO E4061 -1 O LEU E4060 N ALA E4057 CISPEP 1 LYS A 63 PRO A 64 0 0.88 CISPEP 2 GLU A 149 PRO A 150 0 -0.03 CISPEP 3 LYS B 1063 PRO B 1064 0 0.83 CISPEP 4 GLU B 1149 PRO B 1150 0 -0.19 CISPEP 5 LYS C 2063 PRO C 2064 0 0.82 CISPEP 6 GLU C 2149 PRO C 2150 0 0.04 CISPEP 7 LYS D 3063 PRO D 3064 0 0.80 CISPEP 8 GLU D 3149 PRO D 3150 0 -0.10 CISPEP 9 LYS E 4063 PRO E 4064 0 0.90 CISPEP 10 GLU E 4149 PRO E 4150 0 -0.17 SITE 1 AC1 17 HOH D 224 HOH D 843 HIS D3022 ASP D3024 SITE 2 AC1 17 LYS D3071 VAL D3072 THR D3073 ASN D3075 SITE 3 AC1 17 PHE D3119 HOH E 810 LEU E4052 LEU E4053 SITE 4 AC1 17 ASP E4076 ALA E4077 ALA E4080 PHE E4084 SITE 5 AC1 17 GLN E4088 SITE 1 AC2 18 HOH C 483 HIS C2022 ASP C2024 LYS C2071 SITE 2 AC2 18 VAL C2072 THR C2073 PHE C2119 PHE C2166 SITE 3 AC2 18 HIS D3047 GLY D3048 THR D3050 LEU D3052 SITE 4 AC2 18 LEU D3053 ASN D3075 ASP D3076 ALA D3077 SITE 5 AC2 18 PHE D3084 GLN D3088 SITE 1 AC3 15 THR A 50 LEU A 52 LEU A 53 ASP A 76 SITE 2 AC3 15 ALA A 77 PHE A 84 GLN A 88 HOH A 855 SITE 3 AC3 15 HOH E 260 HIS E4022 ASP E4024 LYS E4071 SITE 4 AC3 15 VAL E4072 THR E4073 PHE E4119 SITE 1 AC4 17 HOH B 812 HOH B 815 HIS B1022 ASP B1024 SITE 2 AC4 17 LYS B1071 VAL B1072 THR B1073 THR C2050 SITE 3 AC4 17 LEU C2052 LEU C2053 ILE C2074 ASN C2075 SITE 4 AC4 17 ASP C2076 ALA C2077 ALA C2080 PHE C2084 SITE 5 AC4 17 GLN C2088 SITE 1 AC5 18 HIS A 22 ASP A 24 LYS A 71 VAL A 72 SITE 2 AC5 18 THR A 73 PHE A 119 HOH A 388 HOH B 814 SITE 3 AC5 18 THR B1050 LEU B1052 LEU B1053 VAL B1055 SITE 4 AC5 18 ILE B1074 ASN B1075 ASP B1076 ALA B1077 SITE 5 AC5 18 PHE B1084 GLN B1088 CRYST1 48.860 112.590 72.010 90.00 91.00 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020467 0.000000 0.000357 0.00000 SCALE2 0.000000 0.008882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013889 0.00000