data_1Y75 # _entry.id 1Y75 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y75 RCSB RCSB031200 WWPDB D_1000031200 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1S6B _pdbx_database_related.details 'a complex form between two homologous isoforms of Phospholipase A2' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y75 _pdbx_database_status.recvd_initial_deposition_date 2004-12-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jabeen, T.' 1 'Singh, N.' 2 'Jasti, J.' 3 'Singh, R.K.' 4 'Sharma, S.' 5 'Perbandt, M.' 6 'Betzel, C.' 7 'Kaur, P.' 8 'Srinivasan, A.' 9 'Singh, T.P.' 10 # _citation.id primary _citation.title ;Crystal structure of a heterodimer of phospholipase A2 from Naja naja sagittifera at 2.3 A resolution reveals the presence of a new PLA2-like protein with a novel cys 32-Cys 49 disulphide bridge with a bound sugar at the substrate-binding site ; _citation.journal_abbrev Proteins _citation.journal_volume 62 _citation.page_first 329 _citation.page_last 337 _citation.year 2006 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16287060 _citation.pdbx_database_id_DOI 10.1002/prot.20708 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jabeen, T.' 1 ? primary 'Singh, N.' 2 ? primary 'Singh, R.K.' 3 ? primary 'Jasti, J.' 4 ? primary 'Sharma, S.' 5 ? primary 'Kaur, P.' 6 ? primary 'Srinivasan, A.' 7 ? primary 'Singh, T.P.' 8 ? # _cell.entry_id 1Y75 _cell.length_a 77.656 _cell.length_b 77.656 _cell.length_c 68.424 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Y75 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'phospholipase A2 isoform 5' 13073.556 1 3.1.1.4 ? ? ? 2 polymer nat 'phospholipase A2 isoform 6' 12714.015 1 3.1.1.4 ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 247 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NTYQFRNMIQCTVPSRSWWDFADYGCYCGCGSGTPVDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYECSGGTLTCKGD NNACAASSCDCDRLAAICFAGAPYNDNNYNIDLKARCN ; ;NTYQFRNMIQCTVPSRSWWDFADYGCYCGCGSGTPVDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYECSGGTLTCKGD NNACAASSCDCDRLAAICFAGAPYNDNNYNIDLKARCN ; A ? 2 'polypeptide(L)' no no ;NIKQFNNMIQCTVPARSWWDFADYGCYCGSGSGSPVDDLDRCCQVHDNCYNAGGGVTGCAPKSKTYTYECSQGTLTCSGE NSACAATVCDCDRLAAICFAGAPYNDNNYNIDLKSRCQ ; ;NIKQFNNMIQCTVPARSWWDFADYGCYCGSGSGSPVDDLDRCCQVHDNCYNAGGGVTGCAPKSKTYTYECSQGTLTCSGE NSACAATVCDCDRLAAICFAGAPYNDNNYNIDLKSRCQ ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 THR n 1 3 TYR n 1 4 GLN n 1 5 PHE n 1 6 ARG n 1 7 ASN n 1 8 MET n 1 9 ILE n 1 10 GLN n 1 11 CYS n 1 12 THR n 1 13 VAL n 1 14 PRO n 1 15 SER n 1 16 ARG n 1 17 SER n 1 18 TRP n 1 19 TRP n 1 20 ASP n 1 21 PHE n 1 22 ALA n 1 23 ASP n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 TYR n 1 28 CYS n 1 29 GLY n 1 30 CYS n 1 31 GLY n 1 32 SER n 1 33 GLY n 1 34 THR n 1 35 PRO n 1 36 VAL n 1 37 ASP n 1 38 ASP n 1 39 LEU n 1 40 ASP n 1 41 ARG n 1 42 CYS n 1 43 CYS n 1 44 GLN n 1 45 VAL n 1 46 HIS n 1 47 CYS n 1 48 ASN n 1 49 CYS n 1 50 TYR n 1 51 ARG n 1 52 GLN n 1 53 ALA n 1 54 GLY n 1 55 GLU n 1 56 ILE n 1 57 SER n 1 58 GLY n 1 59 CYS n 1 60 ARG n 1 61 PRO n 1 62 LYS n 1 63 PHE n 1 64 LYS n 1 65 THR n 1 66 TYR n 1 67 THR n 1 68 TYR n 1 69 GLU n 1 70 CYS n 1 71 SER n 1 72 GLY n 1 73 GLY n 1 74 THR n 1 75 LEU n 1 76 THR n 1 77 CYS n 1 78 LYS n 1 79 GLY n 1 80 ASP n 1 81 ASN n 1 82 ASN n 1 83 ALA n 1 84 CYS n 1 85 ALA n 1 86 ALA n 1 87 SER n 1 88 SER n 1 89 CYS n 1 90 ASP n 1 91 CYS n 1 92 ASP n 1 93 ARG n 1 94 LEU n 1 95 ALA n 1 96 ALA n 1 97 ILE n 1 98 CYS n 1 99 PHE n 1 100 ALA n 1 101 GLY n 1 102 ALA n 1 103 PRO n 1 104 TYR n 1 105 ASN n 1 106 ASP n 1 107 ASN n 1 108 ASN n 1 109 TYR n 1 110 ASN n 1 111 ILE n 1 112 ASP n 1 113 LEU n 1 114 LYS n 1 115 ALA n 1 116 ARG n 1 117 CYS n 1 118 ASN n 2 1 ASN n 2 2 ILE n 2 3 LYS n 2 4 GLN n 2 5 PHE n 2 6 ASN n 2 7 ASN n 2 8 MET n 2 9 ILE n 2 10 GLN n 2 11 CYS n 2 12 THR n 2 13 VAL n 2 14 PRO n 2 15 ALA n 2 16 ARG n 2 17 SER n 2 18 TRP n 2 19 TRP n 2 20 ASP n 2 21 PHE n 2 22 ALA n 2 23 ASP n 2 24 TYR n 2 25 GLY n 2 26 CYS n 2 27 TYR n 2 28 CYS n 2 29 GLY n 2 30 SER n 2 31 GLY n 2 32 SER n 2 33 GLY n 2 34 SER n 2 35 PRO n 2 36 VAL n 2 37 ASP n 2 38 ASP n 2 39 LEU n 2 40 ASP n 2 41 ARG n 2 42 CYS n 2 43 CYS n 2 44 GLN n 2 45 VAL n 2 46 HIS n 2 47 ASP n 2 48 ASN n 2 49 CYS n 2 50 TYR n 2 51 ASN n 2 52 ALA n 2 53 GLY n 2 54 GLY n 2 55 GLY n 2 56 VAL n 2 57 THR n 2 58 GLY n 2 59 CYS n 2 60 ALA n 2 61 PRO n 2 62 LYS n 2 63 SER n 2 64 LYS n 2 65 THR n 2 66 TYR n 2 67 THR n 2 68 TYR n 2 69 GLU n 2 70 CYS n 2 71 SER n 2 72 GLN n 2 73 GLY n 2 74 THR n 2 75 LEU n 2 76 THR n 2 77 CYS n 2 78 SER n 2 79 GLY n 2 80 GLU n 2 81 ASN n 2 82 SER n 2 83 ALA n 2 84 CYS n 2 85 ALA n 2 86 ALA n 2 87 THR n 2 88 VAL n 2 89 CYS n 2 90 ASP n 2 91 CYS n 2 92 ASP n 2 93 ARG n 2 94 LEU n 2 95 ALA n 2 96 ALA n 2 97 ILE n 2 98 CYS n 2 99 PHE n 2 100 ALA n 2 101 GLY n 2 102 ALA n 2 103 PRO n 2 104 TYR n 2 105 ASN n 2 106 ASP n 2 107 ASN n 2 108 ASN n 2 109 TYR n 2 110 ASN n 2 111 ILE n 2 112 ASP n 2 113 LEU n 2 114 LYS n 2 115 SER n 2 116 ARG n 2 117 CYS n 2 118 GLN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Naja sagittifera' 195058 Naja ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Naja sagittifera' 195058 Naja ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q5G291_NAJSG Q5G291 1 ;NTYQFRNMIQCTVPSRSWWDFADYGCYCGCGSGTPVDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYECSGGTLTCKGD NNACAASSCDCDRLAAICFAGAPYNDNNYNIDLKARCN ; 8 ? 2 UNP Q5G290_NAJSG Q5G290 2 ;NIKQFNNMIQCTVPARSWWDFADYGCYCGSGSGSPVDDLDRCCQVHDNCYNAGGGVTGCAPKSKTYTYECSQGTLTCSGE NSACAATVCDCDRLAAICFAGAPYNDNNYNIDLKSRCQ ; 8 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Y75 A 1 ? 118 ? Q5G291 8 ? 125 ? 1 120 2 2 1Y75 B 1 ? 118 ? Q5G290 8 ? 125 ? 1 120 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1Y75 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '10MM SODIUM CACODYLATE, 2MM ZINC ACETATE, 25% ETHANOL , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 278 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91 # _reflns.entry_id 1Y75 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.3 _reflns.number_obs 10138 _reflns.number_all 10138 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 51.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Y75 _refine.ls_number_reflns_obs 9636 _refine.ls_number_reflns_all 9636 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2405287.86 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.95 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 502 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.4 _refine.aniso_B[1][1] -6.00 _refine.aniso_B[2][2] -6.00 _refine.aniso_B[3][3] 12.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.319563 _refine.solvent_model_param_bsol 69.5091 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Y75 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1784 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 2048 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.95 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.49 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.46 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.11 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.14 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1401 _refine_ls_shell.R_factor_R_work 0.331 _refine_ls_shell.percent_reflns_obs 94.2 _refine_ls_shell.R_factor_R_free 0.394 _refine_ls_shell.R_factor_R_free_error 0.042 _refine_ls_shell.percent_reflns_R_free 6.0 _refine_ls_shell.number_reflns_R_free 502 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ACY.TOP 'X-RAY DIFFRACTION' 4 ACY.PARAM ION.TOP 'X-RAY DIFFRACTION' 5 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1Y75 _struct.title ;A new form of catalytically inactive phospholipase A2 with an unusual disulphide bridge Cys 32- Cys 49 reveals recognition for N-acetylglucosmine ; _struct.pdbx_descriptor 'Phospholipase A2 (E.C.3.1.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y75 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Enzyme, Activity, Molecular association, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 1 ? VAL A 13 ? ASN A 1 VAL A 13 1 ? 13 HELX_P HELX_P2 2 SER A 17 ? ALA A 22 ? SER A 18 ALA A 23 5 ? 6 HELX_P HELX_P3 3 ASP A 37 ? GLY A 54 ? ASP A 39 GLY A 56 1 ? 18 HELX_P HELX_P4 4 ASN A 82 ? ALA A 102 ? ASN A 84 ALA A 104 1 ? 21 HELX_P HELX_P5 5 ASN A 105 ? TYR A 109 ? ASN A 107 TYR A 111 5 ? 5 HELX_P HELX_P6 6 ASP A 112 ? CYS A 117 ? ASP A 114 CYS A 119 1 ? 6 HELX_P HELX_P7 7 ASN B 1 ? VAL B 13 ? ASN B 1 VAL B 13 1 ? 13 HELX_P HELX_P8 8 TRP B 18 ? ASP B 23 ? TRP B 19 ASP B 24 1 ? 6 HELX_P HELX_P9 9 ASP B 37 ? GLY B 54 ? ASP B 39 GLY B 56 1 ? 18 HELX_P HELX_P10 10 SER B 82 ? ALA B 102 ? SER B 84 ALA B 104 1 ? 21 HELX_P HELX_P11 11 ASN B 105 ? TYR B 109 ? ASN B 107 TYR B 111 5 ? 5 HELX_P HELX_P12 12 ASP B 112 ? CYS B 117 ? ASP B 114 CYS B 119 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 70 SG ? ? A CYS 11 A CYS 72 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 117 SG ? ? A CYS 27 A CYS 119 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 1.853 ? ? disulf4 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 32 A CYS 49 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf5 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 44 A CYS 100 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf6 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 51 A CYS 93 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf7 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 61 A CYS 86 1_555 ? ? ? ? ? ? ? 1.843 ? ? disulf8 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 79 A CYS 91 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf9 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 70 SG ? ? B CYS 11 B CYS 72 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf10 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 117 SG ? ? B CYS 27 B CYS 119 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf11 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 43 SG ? ? B CYS 29 B CYS 45 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf12 disulf ? ? B CYS 42 SG ? ? ? 1_555 B CYS 98 SG ? ? B CYS 44 B CYS 100 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf13 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 51 B CYS 93 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf14 disulf ? ? B CYS 59 SG ? ? ? 1_555 B CYS 84 SG ? ? B CYS 61 B CYS 86 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf15 disulf ? ? B CYS 77 SG ? ? ? 1_555 B CYS 89 SG ? ? B CYS 79 B CYS 91 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc1 metalc ? ? A ASP 23 OD1 ? ? ? 1_555 D ZN . ZN ? ? A ASP 24 A ZN 401 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc2 metalc ? ? A ASP 23 OD2 ? ? ? 1_555 D ZN . ZN ? ? A ASP 24 A ZN 401 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc3 metalc ? ? A GLU 69 OE2 ? ? ? 1_555 E ZN . ZN ? ? A GLU 71 A ZN 402 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc4 metalc ? ? A GLU 69 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 71 A ZN 402 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc5 metalc ? ? A GLU 69 OE2 ? ? ? 8_775 E ZN . ZN ? ? A GLU 71 A ZN 402 1_555 ? ? ? ? ? ? ? 2.699 ? ? metalc6 metalc ? ? A GLU 69 OE1 ? ? ? 8_775 E ZN . ZN ? ? A GLU 71 A ZN 402 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc7 metalc ? ? A ASN 110 OD1 ? ? ? 1_555 D ZN . ZN ? ? A ASN 112 A ZN 401 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc8 metalc ? ? A ASN 118 O ? ? ? 4_564 E ZN . ZN ? ? A ASN 120 A ZN 402 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc9 metalc ? ? A ASN 118 O ? ? ? 6_565 E ZN . ZN ? ? A ASN 120 A ZN 402 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 B ASP 23 OD1 ? ? A ZN 401 B ASP 24 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc11 metalc ? ? D ZN . ZN ? ? ? 1_555 B ASP 23 OD2 ? ? A ZN 401 B ASP 24 1_555 ? ? ? ? ? ? ? 2.217 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 68 ? SER A 71 ? TYR A 70 SER A 73 A 2 THR A 74 ? CYS A 77 ? THR A 76 CYS A 79 B 1 TYR B 68 ? SER B 71 ? TYR B 70 SER B 73 B 2 THR B 74 ? CYS B 77 ? THR B 76 CYS B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 69 ? N GLU A 71 O THR A 76 ? O THR A 78 B 1 2 N SER B 71 ? N SER B 73 O THR B 74 ? O THR B 76 # _database_PDB_matrix.entry_id 1Y75 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y75 _atom_sites.fract_transf_matrix[1][1] 0.012877 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012877 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014615 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 SER 17 18 18 SER SER A . n A 1 18 TRP 18 19 19 TRP TRP A . n A 1 19 TRP 19 20 20 TRP TRP A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 PHE 21 22 22 PHE PHE A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 ASP 23 24 24 ASP ASP A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 CYS 26 27 27 CYS CYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 CYS 30 32 32 CYS CYS A . n A 1 31 GLY 31 33 33 GLY GLY A . n A 1 32 SER 32 34 34 SER SER A . n A 1 33 GLY 33 35 35 GLY GLY A . n A 1 34 THR 34 36 36 THR THR A . n A 1 35 PRO 35 37 37 PRO PRO A . n A 1 36 VAL 36 38 38 VAL VAL A . n A 1 37 ASP 37 39 39 ASP ASP A . n A 1 38 ASP 38 40 40 ASP ASP A . n A 1 39 LEU 39 41 41 LEU LEU A . n A 1 40 ASP 40 42 42 ASP ASP A . n A 1 41 ARG 41 43 43 ARG ARG A . n A 1 42 CYS 42 44 44 CYS CYS A . n A 1 43 CYS 43 45 45 CYS CYS A . n A 1 44 GLN 44 46 46 GLN GLN A . n A 1 45 VAL 45 47 47 VAL VAL A . n A 1 46 HIS 46 48 48 HIS HIS A . n A 1 47 CYS 47 49 49 CYS CYS A . n A 1 48 ASN 48 50 50 ASN ASN A . n A 1 49 CYS 49 51 51 CYS CYS A . n A 1 50 TYR 50 52 52 TYR TYR A . n A 1 51 ARG 51 53 53 ARG ARG A . n A 1 52 GLN 52 54 54 GLN GLN A . n A 1 53 ALA 53 55 55 ALA ALA A . n A 1 54 GLY 54 56 56 GLY GLY A . n A 1 55 GLU 55 57 57 GLU GLU A . n A 1 56 ILE 56 58 58 ILE ILE A . n A 1 57 SER 57 59 59 SER SER A . n A 1 58 GLY 58 60 60 GLY GLY A . n A 1 59 CYS 59 61 61 CYS CYS A . n A 1 60 ARG 60 62 62 ARG ARG A . n A 1 61 PRO 61 63 63 PRO PRO A . n A 1 62 LYS 62 64 64 LYS LYS A . n A 1 63 PHE 63 65 65 PHE PHE A . n A 1 64 LYS 64 66 66 LYS LYS A . n A 1 65 THR 65 67 67 THR THR A . n A 1 66 TYR 66 68 68 TYR TYR A . n A 1 67 THR 67 69 69 THR THR A . n A 1 68 TYR 68 70 70 TYR TYR A . n A 1 69 GLU 69 71 71 GLU GLU A . n A 1 70 CYS 70 72 72 CYS CYS A . n A 1 71 SER 71 73 73 SER SER A . n A 1 72 GLY 72 74 74 GLY GLY A . n A 1 73 GLY 73 75 75 GLY GLY A . n A 1 74 THR 74 76 76 THR THR A . n A 1 75 LEU 75 77 77 LEU LEU A . n A 1 76 THR 76 78 78 THR THR A . n A 1 77 CYS 77 79 79 CYS CYS A . n A 1 78 LYS 78 80 80 LYS LYS A . n A 1 79 GLY 79 81 81 GLY GLY A . n A 1 80 ASP 80 82 82 ASP ASP A . n A 1 81 ASN 81 83 83 ASN ASN A . n A 1 82 ASN 82 84 84 ASN ASN A . n A 1 83 ALA 83 85 85 ALA ALA A . n A 1 84 CYS 84 86 86 CYS CYS A . n A 1 85 ALA 85 87 87 ALA ALA A . n A 1 86 ALA 86 88 88 ALA ALA A . n A 1 87 SER 87 89 89 SER SER A . n A 1 88 SER 88 90 90 SER SER A . n A 1 89 CYS 89 91 91 CYS CYS A . n A 1 90 ASP 90 92 92 ASP ASP A . n A 1 91 CYS 91 93 93 CYS CYS A . n A 1 92 ASP 92 94 94 ASP ASP A . n A 1 93 ARG 93 95 95 ARG ARG A . n A 1 94 LEU 94 96 96 LEU LEU A . n A 1 95 ALA 95 97 97 ALA ALA A . n A 1 96 ALA 96 98 98 ALA ALA A . n A 1 97 ILE 97 99 99 ILE ILE A . n A 1 98 CYS 98 100 100 CYS CYS A . n A 1 99 PHE 99 101 101 PHE PHE A . n A 1 100 ALA 100 102 102 ALA ALA A . n A 1 101 GLY 101 103 103 GLY GLY A . n A 1 102 ALA 102 104 104 ALA ALA A . n A 1 103 PRO 103 105 105 PRO PRO A . n A 1 104 TYR 104 106 106 TYR TYR A . n A 1 105 ASN 105 107 107 ASN ASN A . n A 1 106 ASP 106 108 108 ASP ASP A . n A 1 107 ASN 107 109 109 ASN ASN A . n A 1 108 ASN 108 110 110 ASN ASN A . n A 1 109 TYR 109 111 111 TYR TYR A . n A 1 110 ASN 110 112 112 ASN ASN A . n A 1 111 ILE 111 113 113 ILE ILE A . n A 1 112 ASP 112 114 114 ASP ASP A . n A 1 113 LEU 113 115 115 LEU LEU A . n A 1 114 LYS 114 116 116 LYS LYS A . n A 1 115 ALA 115 117 117 ALA ALA A . n A 1 116 ARG 116 118 118 ARG ARG A . n A 1 117 CYS 117 119 119 CYS CYS A . n A 1 118 ASN 118 120 120 ASN ASN A . n B 2 1 ASN 1 1 1 ASN ASN B . n B 2 2 ILE 2 2 2 ILE ILE B . n B 2 3 LYS 3 3 3 LYS LYS B . n B 2 4 GLN 4 4 4 GLN GLN B . n B 2 5 PHE 5 5 5 PHE PHE B . n B 2 6 ASN 6 6 6 ASN ASN B . n B 2 7 ASN 7 7 7 ASN ASN B . n B 2 8 MET 8 8 8 MET MET B . n B 2 9 ILE 9 9 9 ILE ILE B . n B 2 10 GLN 10 10 10 GLN GLN B . n B 2 11 CYS 11 11 11 CYS CYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 VAL 13 13 13 VAL VAL B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 ALA 15 15 15 ALA ALA B . n B 2 16 ARG 16 17 17 ARG ARG B . n B 2 17 SER 17 18 18 SER SER B . n B 2 18 TRP 18 19 19 TRP TRP B . n B 2 19 TRP 19 20 20 TRP TRP B . n B 2 20 ASP 20 21 21 ASP ASP B . n B 2 21 PHE 21 22 22 PHE PHE B . n B 2 22 ALA 22 23 23 ALA ALA B . n B 2 23 ASP 23 24 24 ASP ASP B . n B 2 24 TYR 24 25 25 TYR TYR B . n B 2 25 GLY 25 26 26 GLY GLY B . n B 2 26 CYS 26 27 27 CYS CYS B . n B 2 27 TYR 27 28 28 TYR TYR B . n B 2 28 CYS 28 29 29 CYS CYS B . n B 2 29 GLY 29 30 30 GLY GLY B . n B 2 30 SER 30 31 31 SER SER B . n B 2 31 GLY 31 33 33 GLY GLY B . n B 2 32 SER 32 34 34 SER SER B . n B 2 33 GLY 33 35 35 GLY GLY B . n B 2 34 SER 34 36 36 SER SER B . n B 2 35 PRO 35 37 37 PRO PRO B . n B 2 36 VAL 36 38 38 VAL VAL B . n B 2 37 ASP 37 39 39 ASP ASP B . n B 2 38 ASP 38 40 40 ASP ASP B . n B 2 39 LEU 39 41 41 LEU LEU B . n B 2 40 ASP 40 42 42 ASP ASP B . n B 2 41 ARG 41 43 43 ARG ARG B . n B 2 42 CYS 42 44 44 CYS CYS B . n B 2 43 CYS 43 45 45 CYS CYS B . n B 2 44 GLN 44 46 46 GLN GLN B . n B 2 45 VAL 45 47 47 VAL VAL B . n B 2 46 HIS 46 48 48 HIS HIS B . n B 2 47 ASP 47 49 49 ASP ASP B . n B 2 48 ASN 48 50 50 ASN ASN B . n B 2 49 CYS 49 51 51 CYS CYS B . n B 2 50 TYR 50 52 52 TYR TYR B . n B 2 51 ASN 51 53 53 ASN ASN B . n B 2 52 ALA 52 54 54 ALA ALA B . n B 2 53 GLY 53 55 55 GLY GLY B . n B 2 54 GLY 54 56 56 GLY GLY B . n B 2 55 GLY 55 57 57 GLY GLY B . n B 2 56 VAL 56 58 58 VAL VAL B . n B 2 57 THR 57 59 59 THR THR B . n B 2 58 GLY 58 60 60 GLY GLY B . n B 2 59 CYS 59 61 61 CYS CYS B . n B 2 60 ALA 60 62 62 ALA ALA B . n B 2 61 PRO 61 63 63 PRO PRO B . n B 2 62 LYS 62 64 64 LYS LYS B . n B 2 63 SER 63 65 65 SER SER B . n B 2 64 LYS 64 66 66 LYS LYS B . n B 2 65 THR 65 67 67 THR THR B . n B 2 66 TYR 66 68 68 TYR TYR B . n B 2 67 THR 67 69 69 THR THR B . n B 2 68 TYR 68 70 70 TYR TYR B . n B 2 69 GLU 69 71 71 GLU GLU B . n B 2 70 CYS 70 72 72 CYS CYS B . n B 2 71 SER 71 73 73 SER SER B . n B 2 72 GLN 72 74 74 GLN GLN B . n B 2 73 GLY 73 75 75 GLY GLY B . n B 2 74 THR 74 76 76 THR THR B . n B 2 75 LEU 75 77 77 LEU LEU B . n B 2 76 THR 76 78 78 THR THR B . n B 2 77 CYS 77 79 79 CYS CYS B . n B 2 78 SER 78 80 80 SER SER B . n B 2 79 GLY 79 81 81 GLY GLY B . n B 2 80 GLU 80 82 82 GLU GLU B . n B 2 81 ASN 81 83 83 ASN ASN B . n B 2 82 SER 82 84 84 SER SER B . n B 2 83 ALA 83 85 85 ALA ALA B . n B 2 84 CYS 84 86 86 CYS CYS B . n B 2 85 ALA 85 87 87 ALA ALA B . n B 2 86 ALA 86 88 88 ALA ALA B . n B 2 87 THR 87 89 89 THR THR B . n B 2 88 VAL 88 90 90 VAL VAL B . n B 2 89 CYS 89 91 91 CYS CYS B . n B 2 90 ASP 90 92 92 ASP ASP B . n B 2 91 CYS 91 93 93 CYS CYS B . n B 2 92 ASP 92 94 94 ASP ASP B . n B 2 93 ARG 93 95 95 ARG ARG B . n B 2 94 LEU 94 96 96 LEU LEU B . n B 2 95 ALA 95 97 97 ALA ALA B . n B 2 96 ALA 96 98 98 ALA ALA B . n B 2 97 ILE 97 99 99 ILE ILE B . n B 2 98 CYS 98 100 100 CYS CYS B . n B 2 99 PHE 99 101 101 PHE PHE B . n B 2 100 ALA 100 102 102 ALA ALA B . n B 2 101 GLY 101 103 103 GLY GLY B . n B 2 102 ALA 102 104 104 ALA ALA B . n B 2 103 PRO 103 105 105 PRO PRO B . n B 2 104 TYR 104 106 106 TYR TYR B . n B 2 105 ASN 105 107 107 ASN ASN B . n B 2 106 ASP 106 108 108 ASP ASP B . n B 2 107 ASN 107 109 109 ASN ASN B . n B 2 108 ASN 108 110 110 ASN ASN B . n B 2 109 TYR 109 111 111 TYR TYR B . n B 2 110 ASN 110 112 112 ASN ASN B . n B 2 111 ILE 111 113 113 ILE ILE B . n B 2 112 ASP 112 114 114 ASP ASP B . n B 2 113 LEU 113 115 115 LEU LEU B . n B 2 114 LYS 114 116 116 LYS LYS B . n B 2 115 SER 115 117 117 SER SER B . n B 2 116 ARG 116 118 118 ARG ARG B . n B 2 117 CYS 117 119 119 CYS CYS B . n B 2 118 GLN 118 120 120 GLN GLN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 301 301 NAG NAG A . D 4 ZN 1 401 401 ZN ZN A . E 4 ZN 1 402 402 ZN ZN A . F 5 HOH 1 403 1 HOH HOH A . F 5 HOH 2 404 2 HOH HOH A . F 5 HOH 3 405 3 HOH HOH A . F 5 HOH 4 406 4 HOH HOH A . F 5 HOH 5 407 5 HOH HOH A . F 5 HOH 6 408 6 HOH HOH A . F 5 HOH 7 409 8 HOH HOH A . F 5 HOH 8 410 9 HOH HOH A . F 5 HOH 9 411 11 HOH HOH A . F 5 HOH 10 412 12 HOH HOH A . F 5 HOH 11 413 13 HOH HOH A . F 5 HOH 12 414 15 HOH HOH A . F 5 HOH 13 415 17 HOH HOH A . F 5 HOH 14 416 18 HOH HOH A . F 5 HOH 15 417 19 HOH HOH A . F 5 HOH 16 418 22 HOH HOH A . F 5 HOH 17 419 23 HOH HOH A . F 5 HOH 18 420 24 HOH HOH A . F 5 HOH 19 421 25 HOH HOH A . F 5 HOH 20 422 26 HOH HOH A . F 5 HOH 21 423 27 HOH HOH A . F 5 HOH 22 424 28 HOH HOH A . F 5 HOH 23 425 32 HOH HOH A . F 5 HOH 24 426 39 HOH HOH A . F 5 HOH 25 427 42 HOH HOH A . F 5 HOH 26 428 43 HOH HOH A . F 5 HOH 27 429 45 HOH HOH A . F 5 HOH 28 430 46 HOH HOH A . F 5 HOH 29 431 47 HOH HOH A . F 5 HOH 30 432 48 HOH HOH A . F 5 HOH 31 433 50 HOH HOH A . F 5 HOH 32 434 51 HOH HOH A . F 5 HOH 33 435 56 HOH HOH A . F 5 HOH 34 436 57 HOH HOH A . F 5 HOH 35 437 58 HOH HOH A . F 5 HOH 36 438 59 HOH HOH A . F 5 HOH 37 439 60 HOH HOH A . F 5 HOH 38 440 61 HOH HOH A . F 5 HOH 39 441 62 HOH HOH A . F 5 HOH 40 442 63 HOH HOH A . F 5 HOH 41 443 64 HOH HOH A . F 5 HOH 42 444 65 HOH HOH A . F 5 HOH 43 445 69 HOH HOH A . F 5 HOH 44 446 70 HOH HOH A . F 5 HOH 45 447 77 HOH HOH A . F 5 HOH 46 448 79 HOH HOH A . F 5 HOH 47 449 80 HOH HOH A . F 5 HOH 48 450 81 HOH HOH A . F 5 HOH 49 451 82 HOH HOH A . F 5 HOH 50 452 84 HOH HOH A . F 5 HOH 51 453 87 HOH HOH A . F 5 HOH 52 454 88 HOH HOH A . F 5 HOH 53 455 89 HOH HOH A . F 5 HOH 54 456 90 HOH HOH A . F 5 HOH 55 457 91 HOH HOH A . F 5 HOH 56 458 93 HOH HOH A . F 5 HOH 57 459 94 HOH HOH A . F 5 HOH 58 460 95 HOH HOH A . F 5 HOH 59 461 99 HOH HOH A . F 5 HOH 60 462 100 HOH HOH A . F 5 HOH 61 463 103 HOH HOH A . F 5 HOH 62 464 104 HOH HOH A . F 5 HOH 63 465 105 HOH HOH A . F 5 HOH 64 466 106 HOH HOH A . F 5 HOH 65 467 109 HOH HOH A . F 5 HOH 66 468 110 HOH HOH A . F 5 HOH 67 469 111 HOH HOH A . F 5 HOH 68 470 112 HOH HOH A . F 5 HOH 69 471 113 HOH HOH A . F 5 HOH 70 472 117 HOH HOH A . F 5 HOH 71 473 118 HOH HOH A . F 5 HOH 72 474 119 HOH HOH A . F 5 HOH 73 475 122 HOH HOH A . F 5 HOH 74 476 126 HOH HOH A . F 5 HOH 75 477 129 HOH HOH A . F 5 HOH 76 478 132 HOH HOH A . F 5 HOH 77 479 133 HOH HOH A . F 5 HOH 78 480 134 HOH HOH A . F 5 HOH 79 481 136 HOH HOH A . F 5 HOH 80 482 140 HOH HOH A . F 5 HOH 81 483 142 HOH HOH A . F 5 HOH 82 484 144 HOH HOH A . F 5 HOH 83 485 147 HOH HOH A . F 5 HOH 84 486 148 HOH HOH A . F 5 HOH 85 487 153 HOH HOH A . F 5 HOH 86 488 155 HOH HOH A . F 5 HOH 87 489 157 HOH HOH A . F 5 HOH 88 490 159 HOH HOH A . F 5 HOH 89 491 161 HOH HOH A . F 5 HOH 90 492 166 HOH HOH A . F 5 HOH 91 493 168 HOH HOH A . F 5 HOH 92 494 169 HOH HOH A . F 5 HOH 93 495 174 HOH HOH A . F 5 HOH 94 496 175 HOH HOH A . F 5 HOH 95 497 176 HOH HOH A . F 5 HOH 96 498 177 HOH HOH A . F 5 HOH 97 499 178 HOH HOH A . F 5 HOH 98 500 179 HOH HOH A . F 5 HOH 99 501 180 HOH HOH A . F 5 HOH 100 502 181 HOH HOH A . F 5 HOH 101 503 183 HOH HOH A . F 5 HOH 102 504 184 HOH HOH A . F 5 HOH 103 505 185 HOH HOH A . F 5 HOH 104 506 186 HOH HOH A . F 5 HOH 105 507 189 HOH HOH A . F 5 HOH 106 508 193 HOH HOH A . F 5 HOH 107 509 195 HOH HOH A . F 5 HOH 108 510 198 HOH HOH A . F 5 HOH 109 511 203 HOH HOH A . F 5 HOH 110 512 207 HOH HOH A . F 5 HOH 111 513 208 HOH HOH A . F 5 HOH 112 514 209 HOH HOH A . F 5 HOH 113 515 213 HOH HOH A . F 5 HOH 114 516 214 HOH HOH A . F 5 HOH 115 517 215 HOH HOH A . F 5 HOH 116 518 216 HOH HOH A . F 5 HOH 117 519 217 HOH HOH A . F 5 HOH 118 520 219 HOH HOH A . F 5 HOH 119 521 220 HOH HOH A . F 5 HOH 120 522 221 HOH HOH A . F 5 HOH 121 523 224 HOH HOH A . F 5 HOH 122 524 231 HOH HOH A . F 5 HOH 123 525 232 HOH HOH A . F 5 HOH 124 526 234 HOH HOH A . F 5 HOH 125 527 236 HOH HOH A . F 5 HOH 126 528 237 HOH HOH A . F 5 HOH 127 529 239 HOH HOH A . F 5 HOH 128 530 242 HOH HOH A . F 5 HOH 129 531 243 HOH HOH A . F 5 HOH 130 532 245 HOH HOH A . F 5 HOH 131 533 246 HOH HOH A . F 5 HOH 132 534 247 HOH HOH A . G 5 HOH 1 121 7 HOH HOH B . G 5 HOH 2 122 10 HOH HOH B . G 5 HOH 3 123 14 HOH HOH B . G 5 HOH 4 124 16 HOH HOH B . G 5 HOH 5 125 20 HOH HOH B . G 5 HOH 6 126 21 HOH HOH B . G 5 HOH 7 127 29 HOH HOH B . G 5 HOH 8 128 30 HOH HOH B . G 5 HOH 9 129 31 HOH HOH B . G 5 HOH 10 130 33 HOH HOH B . G 5 HOH 11 131 34 HOH HOH B . G 5 HOH 12 132 35 HOH HOH B . G 5 HOH 13 133 36 HOH HOH B . G 5 HOH 14 134 37 HOH HOH B . G 5 HOH 15 135 38 HOH HOH B . G 5 HOH 16 136 40 HOH HOH B . G 5 HOH 17 137 41 HOH HOH B . G 5 HOH 18 138 44 HOH HOH B . G 5 HOH 19 139 49 HOH HOH B . G 5 HOH 20 140 52 HOH HOH B . G 5 HOH 21 141 53 HOH HOH B . G 5 HOH 22 142 54 HOH HOH B . G 5 HOH 23 143 55 HOH HOH B . G 5 HOH 24 144 66 HOH HOH B . G 5 HOH 25 145 67 HOH HOH B . G 5 HOH 26 146 68 HOH HOH B . G 5 HOH 27 147 71 HOH HOH B . G 5 HOH 28 148 72 HOH HOH B . G 5 HOH 29 149 73 HOH HOH B . G 5 HOH 30 150 74 HOH HOH B . G 5 HOH 31 151 75 HOH HOH B . G 5 HOH 32 152 76 HOH HOH B . G 5 HOH 33 153 78 HOH HOH B . G 5 HOH 34 154 83 HOH HOH B . G 5 HOH 35 155 85 HOH HOH B . G 5 HOH 36 156 86 HOH HOH B . G 5 HOH 37 157 92 HOH HOH B . G 5 HOH 38 158 96 HOH HOH B . G 5 HOH 39 159 97 HOH HOH B . G 5 HOH 40 160 98 HOH HOH B . G 5 HOH 41 161 101 HOH HOH B . G 5 HOH 42 162 102 HOH HOH B . G 5 HOH 43 163 107 HOH HOH B . G 5 HOH 44 164 108 HOH HOH B . G 5 HOH 45 165 114 HOH HOH B . G 5 HOH 46 166 115 HOH HOH B . G 5 HOH 47 167 116 HOH HOH B . G 5 HOH 48 168 120 HOH HOH B . G 5 HOH 49 169 121 HOH HOH B . G 5 HOH 50 170 123 HOH HOH B . G 5 HOH 51 171 124 HOH HOH B . G 5 HOH 52 172 125 HOH HOH B . G 5 HOH 53 173 127 HOH HOH B . G 5 HOH 54 174 128 HOH HOH B . G 5 HOH 55 175 130 HOH HOH B . G 5 HOH 56 176 131 HOH HOH B . G 5 HOH 57 177 135 HOH HOH B . G 5 HOH 58 178 137 HOH HOH B . G 5 HOH 59 179 138 HOH HOH B . G 5 HOH 60 180 139 HOH HOH B . G 5 HOH 61 181 141 HOH HOH B . G 5 HOH 62 182 143 HOH HOH B . G 5 HOH 63 183 145 HOH HOH B . G 5 HOH 64 184 146 HOH HOH B . G 5 HOH 65 185 149 HOH HOH B . G 5 HOH 66 186 150 HOH HOH B . G 5 HOH 67 187 151 HOH HOH B . G 5 HOH 68 188 152 HOH HOH B . G 5 HOH 69 189 154 HOH HOH B . G 5 HOH 70 190 156 HOH HOH B . G 5 HOH 71 191 158 HOH HOH B . G 5 HOH 72 192 160 HOH HOH B . G 5 HOH 73 193 162 HOH HOH B . G 5 HOH 74 194 163 HOH HOH B . G 5 HOH 75 195 164 HOH HOH B . G 5 HOH 76 196 165 HOH HOH B . G 5 HOH 77 197 167 HOH HOH B . G 5 HOH 78 198 170 HOH HOH B . G 5 HOH 79 199 171 HOH HOH B . G 5 HOH 80 200 172 HOH HOH B . G 5 HOH 81 201 173 HOH HOH B . G 5 HOH 82 202 182 HOH HOH B . G 5 HOH 83 203 187 HOH HOH B . G 5 HOH 84 204 188 HOH HOH B . G 5 HOH 85 205 190 HOH HOH B . G 5 HOH 86 206 191 HOH HOH B . G 5 HOH 87 207 192 HOH HOH B . G 5 HOH 88 208 194 HOH HOH B . G 5 HOH 89 209 196 HOH HOH B . G 5 HOH 90 210 197 HOH HOH B . G 5 HOH 91 211 199 HOH HOH B . G 5 HOH 92 212 200 HOH HOH B . G 5 HOH 93 213 201 HOH HOH B . G 5 HOH 94 214 202 HOH HOH B . G 5 HOH 95 215 204 HOH HOH B . G 5 HOH 96 216 205 HOH HOH B . G 5 HOH 97 217 206 HOH HOH B . G 5 HOH 98 218 210 HOH HOH B . G 5 HOH 99 219 211 HOH HOH B . G 5 HOH 100 220 212 HOH HOH B . G 5 HOH 101 221 218 HOH HOH B . G 5 HOH 102 222 222 HOH HOH B . G 5 HOH 103 223 223 HOH HOH B . G 5 HOH 104 224 225 HOH HOH B . G 5 HOH 105 225 226 HOH HOH B . G 5 HOH 106 226 227 HOH HOH B . G 5 HOH 107 227 228 HOH HOH B . G 5 HOH 108 228 229 HOH HOH B . G 5 HOH 109 229 230 HOH HOH B . G 5 HOH 110 230 233 HOH HOH B . G 5 HOH 111 231 235 HOH HOH B . G 5 HOH 112 232 238 HOH HOH B . G 5 HOH 113 233 240 HOH HOH B . G 5 HOH 114 234 241 HOH HOH B . G 5 HOH 115 235 244 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G 3 1,3 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2010 ? 1 MORE -40 ? 1 'SSA (A^2)' 11430 ? 2 'ABSA (A^2)' 4240 ? 2 MORE -114 ? 2 'SSA (A^2)' 22740 ? 3 'ABSA (A^2)' 4810 ? 3 MORE -109 ? 3 'SSA (A^2)' 22160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 155.3120000000 -1.0000000000 0.0000000000 0.0000000000 155.3120000000 0.0000000000 0.0000000000 -1.0000000000 34.2120000000 3 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 68.4240000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 402 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD2 ? A ASP 23 ? A ASP 24 ? 1_555 53.8 ? 2 OD1 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD1 ? A ASN 110 ? A ASN 112 ? 1_555 116.9 ? 3 OD2 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD1 ? A ASN 110 ? A ASN 112 ? 1_555 67.3 ? 4 OD1 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD1 ? B ASP 23 ? B ASP 24 ? 1_555 83.5 ? 5 OD2 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD1 ? B ASP 23 ? B ASP 24 ? 1_555 122.5 ? 6 OD1 ? A ASN 110 ? A ASN 112 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD1 ? B ASP 23 ? B ASP 24 ? 1_555 154.2 ? 7 OD1 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD2 ? B ASP 23 ? B ASP 24 ? 1_555 127.8 ? 8 OD2 ? A ASP 23 ? A ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD2 ? B ASP 23 ? B ASP 24 ? 1_555 172.8 ? 9 OD1 ? A ASN 110 ? A ASN 112 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD2 ? B ASP 23 ? B ASP 24 ? 1_555 113.6 ? 10 OD1 ? B ASP 23 ? B ASP 24 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 OD2 ? B ASP 23 ? B ASP 24 ? 1_555 53.5 ? 11 OE2 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 OE1 ? A GLU 69 ? A GLU 71 ? 1_555 52.2 ? 12 OE2 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 OE2 ? A GLU 69 ? A GLU 71 ? 8_775 84.5 ? 13 OE1 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 OE2 ? A GLU 69 ? A GLU 71 ? 8_775 88.3 ? 14 OE2 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 OE1 ? A GLU 69 ? A GLU 71 ? 8_775 87.9 ? 15 OE1 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 OE1 ? A GLU 69 ? A GLU 71 ? 8_775 128.4 ? 16 OE2 ? A GLU 69 ? A GLU 71 ? 8_775 ZN ? E ZN . ? A ZN 402 ? 1_555 OE1 ? A GLU 69 ? A GLU 71 ? 8_775 52.4 ? 17 OE2 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 4_564 102.1 ? 18 OE1 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 4_564 117.8 ? 19 OE2 ? A GLU 69 ? A GLU 71 ? 8_775 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 4_564 151.5 ? 20 OE1 ? A GLU 69 ? A GLU 71 ? 8_775 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 4_564 99.7 ? 21 OE2 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 6_565 151.7 ? 22 OE1 ? A GLU 69 ? A GLU 71 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 6_565 100.3 ? 23 OE2 ? A GLU 69 ? A GLU 71 ? 8_775 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 6_565 102.9 ? 24 OE1 ? A GLU 69 ? A GLU 71 ? 8_775 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 6_565 118.4 ? 25 O ? A ASN 118 ? A ASN 120 ? 4_564 ZN ? E ZN . ? A ZN 402 ? 1_555 O ? A ASN 118 ? A ASN 120 ? 6_565 84.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' diffrn_source 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 0.9 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ARG 62 ? ? N A PRO 63 ? ? CD A PRO 63 ? ? 114.10 128.40 -14.30 2.10 Y 2 1 CB A PRO 63 ? ? CA A PRO 63 ? ? C A PRO 63 ? ? 124.57 111.70 12.87 2.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 24 ? ? -159.49 56.95 2 1 CYS A 32 ? ? 61.33 100.12 3 1 ASP A 39 ? ? -177.24 -179.24 4 1 ASP A 82 ? ? -56.03 9.31 5 1 TYR B 28 ? ? -133.51 -36.69 6 1 CYS B 29 ? ? -62.98 91.08 7 1 SER B 31 ? ? -151.22 -125.99 8 1 SER B 34 ? ? 160.60 145.43 9 1 PRO B 37 ? ? -41.58 156.17 10 1 ASP B 39 ? ? -165.34 -168.79 11 1 GLU B 82 ? ? -65.25 11.54 12 1 LYS B 116 ? ? -59.00 -3.89 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'ZINC ION' ZN 5 water HOH #