HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-DEC-04 1Y89 TITLE CRYSTAL STRUCTURE OF DEVB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEVB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: O1 BIOVAR ELTOR STR. N16961; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.LAZARSKI,M.CYMBOROWSKI,M.CHRUSZCZ,H.ZHENG,R.ZHANG,L.LEZONDRA, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 30-OCT-24 1Y89 1 REMARK REVDAT 5 13-APR-22 1Y89 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 HETSYN LINK REVDAT 4 13-JUL-11 1Y89 1 VERSN REVDAT 3 24-FEB-09 1Y89 1 VERSN REVDAT 2 02-MAY-06 1Y89 1 JRNL REVDAT 1 25-JAN-05 1Y89 0 JRNL AUTH K.LAZARSKI,M.CYMBOROWSKI,M.CHRUSZCZ,H.ZHENG,R.ZHANG, JRNL AUTH 2 L.LEZONDRA,A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF DEVB PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 597 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.619 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3822 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5197 ; 1.420 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.937 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;38.429 ;25.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;12.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2888 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1844 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2576 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 531 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2459 ; 1.015 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3831 ; 1.332 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 2.697 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 3.822 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 238 4 REMARK 3 1 B 1 B 238 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1802 ; 0.25 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1802 ; 0.89 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7760 30.6740 16.5360 REMARK 3 T TENSOR REMARK 3 T11: -0.1147 T22: -0.0301 REMARK 3 T33: -0.0311 T12: 0.0361 REMARK 3 T13: 0.0156 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.8900 L22: 0.8288 REMARK 3 L33: 1.4663 L12: -0.0026 REMARK 3 L13: 0.2487 L23: -0.1956 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0488 S13: -0.0208 REMARK 3 S21: 0.0489 S22: -0.0202 S23: -0.0296 REMARK 3 S31: 0.0262 S32: 0.0730 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0530 56.4970 -6.7890 REMARK 3 T TENSOR REMARK 3 T11: -0.0399 T22: -0.0772 REMARK 3 T33: -0.0110 T12: 0.0345 REMARK 3 T13: 0.0119 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 1.2934 REMARK 3 L33: 1.6743 L12: -0.3402 REMARK 3 L13: 0.4630 L23: -0.7915 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0429 S13: -0.0341 REMARK 3 S21: -0.0353 S22: -0.0397 S23: -0.0756 REMARK 3 S31: 0.0715 S32: 0.0143 S33: 0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG-300, HEPES PH 7.5, 0.2 M NACL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.36000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.72000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.72000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 88 -67.02 -125.28 REMARK 500 HIS A 100 74.44 -110.79 REMARK 500 ALA A 146 -131.65 43.33 REMARK 500 LEU B 88 -66.84 -125.85 REMARK 500 HIS B 100 75.91 -115.17 REMARK 500 ALA B 146 -133.60 47.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE LIGANDS LABELLED PE5 ARE FRAGMENTS OF PEG REMARK 600 MOLECULES REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE5 A 242 REMARK 610 PE5 B 243 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 244 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC27066 RELATED DB: TARGETDB DBREF 1Y89 A 1 238 GB 9658331 AAF96794 1 238 DBREF 1Y89 B 1 238 GB 9658331 AAF96794 1 238 SEQADV 1Y89 MSE A 1 GB 9658331 MET 1 MODIFIED RESIDUE SEQADV 1Y89 MSE A 21 GB 9658331 MET 21 MODIFIED RESIDUE SEQADV 1Y89 MSE A 43 GB 9658331 MET 43 MODIFIED RESIDUE SEQADV 1Y89 MSE A 94 GB 9658331 MET 94 MODIFIED RESIDUE SEQADV 1Y89 MSE A 119 GB 9658331 MET 119 MODIFIED RESIDUE SEQADV 1Y89 MSE B 1 GB 9658331 MET 1 MODIFIED RESIDUE SEQADV 1Y89 MSE B 21 GB 9658331 MET 21 MODIFIED RESIDUE SEQADV 1Y89 MSE B 43 GB 9658331 MET 43 MODIFIED RESIDUE SEQADV 1Y89 MSE B 94 GB 9658331 MET 94 MODIFIED RESIDUE SEQADV 1Y89 MSE B 119 GB 9658331 MET 119 MODIFIED RESIDUE SEQRES 1 A 238 MSE ILE ASN HIS LYS ILE PHE PRO THR ALA ASP ALA VAL SEQRES 2 A 238 VAL LYS SER LEU ALA ASP ASP MSE LEU ALA TYR SER GLN SEQRES 3 A 238 GLN GLY GLN PRO VAL HIS ILE SER LEU SER GLY GLY SER SEQRES 4 A 238 THR PRO LYS MSE LEU PHE LYS LEU LEU ALA SER GLN PRO SEQRES 5 A 238 TYR ALA ASN ASP ILE GLN TRP LYS ASN LEU HIS PHE TRP SEQRES 6 A 238 TRP GLY ASP GLU ARG CYS VAL ALA PRO ASP ASP ALA GLU SEQRES 7 A 238 SER ASN TYR GLY GLU ALA ASN ALA LEU LEU PHE SER LYS SEQRES 8 A 238 ILE ASN MSE PRO ALA GLN ASN ILE HIS ARG ILE LEU GLY SEQRES 9 A 238 GLU ASN GLU PRO GLN ALA GLU ALA GLU ARG PHE ALA GLN SEQRES 10 A 238 ALA MSE ALA HIS VAL ILE PRO THR GLU ASN GLY THR PRO SEQRES 11 A 238 VAL PHE ASP TRP ILE LEU LEU GLY VAL GLY ALA ASP GLY SEQRES 12 A 238 HIS THR ALA SER LEU PHE PRO GLY GLN THR ASP TYR ALA SEQRES 13 A 238 ASP ALA ASN LEU SER VAL VAL ALA SER HIS PRO GLU SER SEQRES 14 A 238 GLY GLN LEU ARG VAL SER LYS THR ALA LYS VAL LEU GLN SEQRES 15 A 238 ALA ALA LYS ARG ILE SER TYR LEU VAL LEU GLY ALA GLY SEQRES 16 A 238 LYS ALA GLU ILE VAL GLU GLN ILE HIS THR THR PRO ALA SEQRES 17 A 238 GLU GLN LEU PRO TYR PRO ALA ALA LYS ILE HIS SER THR SEQRES 18 A 238 SER GLY VAL THR GLU TRP TYR LEU ASP SER ASP ALA ALA SEQRES 19 A 238 ALA LYS ILE ALA SEQRES 1 B 238 MSE ILE ASN HIS LYS ILE PHE PRO THR ALA ASP ALA VAL SEQRES 2 B 238 VAL LYS SER LEU ALA ASP ASP MSE LEU ALA TYR SER GLN SEQRES 3 B 238 GLN GLY GLN PRO VAL HIS ILE SER LEU SER GLY GLY SER SEQRES 4 B 238 THR PRO LYS MSE LEU PHE LYS LEU LEU ALA SER GLN PRO SEQRES 5 B 238 TYR ALA ASN ASP ILE GLN TRP LYS ASN LEU HIS PHE TRP SEQRES 6 B 238 TRP GLY ASP GLU ARG CYS VAL ALA PRO ASP ASP ALA GLU SEQRES 7 B 238 SER ASN TYR GLY GLU ALA ASN ALA LEU LEU PHE SER LYS SEQRES 8 B 238 ILE ASN MSE PRO ALA GLN ASN ILE HIS ARG ILE LEU GLY SEQRES 9 B 238 GLU ASN GLU PRO GLN ALA GLU ALA GLU ARG PHE ALA GLN SEQRES 10 B 238 ALA MSE ALA HIS VAL ILE PRO THR GLU ASN GLY THR PRO SEQRES 11 B 238 VAL PHE ASP TRP ILE LEU LEU GLY VAL GLY ALA ASP GLY SEQRES 12 B 238 HIS THR ALA SER LEU PHE PRO GLY GLN THR ASP TYR ALA SEQRES 13 B 238 ASP ALA ASN LEU SER VAL VAL ALA SER HIS PRO GLU SER SEQRES 14 B 238 GLY GLN LEU ARG VAL SER LYS THR ALA LYS VAL LEU GLN SEQRES 15 B 238 ALA ALA LYS ARG ILE SER TYR LEU VAL LEU GLY ALA GLY SEQRES 16 B 238 LYS ALA GLU ILE VAL GLU GLN ILE HIS THR THR PRO ALA SEQRES 17 B 238 GLU GLN LEU PRO TYR PRO ALA ALA LYS ILE HIS SER THR SEQRES 18 B 238 SER GLY VAL THR GLU TRP TYR LEU ASP SER ASP ALA ALA SEQRES 19 B 238 ALA LYS ILE ALA MODRES 1Y89 MSE A 1 MET SELENOMETHIONINE MODRES 1Y89 MSE A 21 MET SELENOMETHIONINE MODRES 1Y89 MSE A 43 MET SELENOMETHIONINE MODRES 1Y89 MSE A 94 MET SELENOMETHIONINE MODRES 1Y89 MSE A 119 MET SELENOMETHIONINE MODRES 1Y89 MSE B 1 MET SELENOMETHIONINE MODRES 1Y89 MSE B 21 MET SELENOMETHIONINE MODRES 1Y89 MSE B 43 MET SELENOMETHIONINE MODRES 1Y89 MSE B 94 MET SELENOMETHIONINE MODRES 1Y89 MSE B 119 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 21 8 HET MSE A 43 8 HET MSE A 94 8 HET MSE A 119 8 HET MSE B 1 8 HET MSE B 21 8 HET MSE B 43 8 HET MSE B 94 8 HET MSE B 119 8 HET PO4 A 239 5 HET PO4 A 240 5 HET PO4 A 241 5 HET PE5 A 242 7 HET PO4 B 239 5 HET PO4 B 240 5 HET PO4 B 241 5 HET 2PE B 242 28 HET PE5 B 243 7 HET PEG B 244 7 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM 2PE NONAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PO4 6(O4 P 3-) FORMUL 6 PE5 2(C18 H38 O9) FORMUL 10 2PE C18 H38 O10 FORMUL 12 PEG C4 H10 O3 FORMUL 13 HOH *597(H2 O) HELIX 1 1 THR A 9 GLN A 26 1 18 HELIX 2 2 GLY A 38 ALA A 49 1 12 HELIX 3 3 PRO A 52 ILE A 57 1 6 HELIX 4 4 GLN A 58 LYS A 60 5 3 HELIX 5 5 SER A 79 LEU A 88 1 10 HELIX 6 6 PHE A 89 ILE A 92 5 4 HELIX 7 7 PRO A 95 ILE A 99 5 5 HELIX 8 8 GLU A 107 ILE A 123 1 17 HELIX 9 9 THR A 177 ALA A 184 1 8 HELIX 10 10 GLY A 193 GLY A 195 5 3 HELIX 11 11 LYS A 196 THR A 206 1 11 HELIX 12 12 PRO A 207 LEU A 211 5 5 HELIX 13 13 TYR A 213 ILE A 218 1 6 HELIX 14 14 SER A 231 ALA A 235 1 5 HELIX 15 15 THR B 9 GLN B 26 1 18 HELIX 16 16 GLY B 38 ALA B 49 1 12 HELIX 17 17 PRO B 52 ILE B 57 1 6 HELIX 18 18 GLN B 58 LYS B 60 5 3 HELIX 19 19 SER B 79 LEU B 88 1 10 HELIX 20 20 PHE B 89 ILE B 92 5 4 HELIX 21 21 PRO B 95 ILE B 99 5 5 HELIX 22 22 GLU B 107 ILE B 123 1 17 HELIX 23 23 THR B 177 ALA B 184 1 8 HELIX 24 24 GLY B 193 GLY B 195 5 3 HELIX 25 25 LYS B 196 THR B 206 1 11 HELIX 26 26 PRO B 207 LEU B 211 5 5 HELIX 27 27 TYR B 213 ILE B 218 1 6 SHEET 1 A12 LEU A 62 TRP A 66 0 SHEET 2 A12 VAL A 31 LEU A 35 1 N LEU A 35 O TRP A 65 SHEET 3 A12 TRP A 134 LEU A 137 1 O LEU A 136 N SER A 34 SHEET 4 A12 ARG A 186 VAL A 191 1 O LEU A 190 N LEU A 137 SHEET 5 A12 VAL A 224 ASP A 230 1 O GLU A 226 N TYR A 189 SHEET 6 A12 ILE A 2 PHE A 7 1 N LYS A 5 O TRP A 227 SHEET 7 A12 ILE B 2 PHE B 7 -1 O ILE B 6 N ILE A 2 SHEET 8 A12 VAL B 224 ASP B 230 1 O TRP B 227 N LYS B 5 SHEET 9 A12 ARG B 186 VAL B 191 1 N TYR B 189 O TYR B 228 SHEET 10 A12 TRP B 134 LEU B 137 1 N LEU B 137 O SER B 188 SHEET 11 A12 VAL B 31 LEU B 35 1 N SER B 34 O LEU B 136 SHEET 12 A12 LEU B 62 TRP B 66 1 O HIS B 63 N ILE B 33 SHEET 1 B 3 ASP A 68 ARG A 70 0 SHEET 2 B 3 LEU A 172 LYS A 176 -1 O VAL A 174 N GLU A 69 SHEET 3 B 3 SER A 161 SER A 165 -1 N ALA A 164 O ARG A 173 SHEET 1 C 2 THR A 125 GLU A 126 0 SHEET 2 C 2 THR A 129 PRO A 130 -1 O THR A 129 N GLU A 126 SHEET 1 D 3 ASP B 68 ARG B 70 0 SHEET 2 D 3 LEU B 172 LYS B 176 -1 O VAL B 174 N GLU B 69 SHEET 3 D 3 SER B 161 SER B 165 -1 N VAL B 162 O SER B 175 SHEET 1 E 2 THR B 125 GLU B 126 0 SHEET 2 E 2 THR B 129 PRO B 130 -1 O THR B 129 N GLU B 126 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C ASP A 20 N MSE A 21 1555 1555 1.34 LINK C MSE A 21 N LEU A 22 1555 1555 1.33 LINK C ALYS A 42 N MSE A 43 1555 1555 1.33 LINK C BLYS A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N LEU A 44 1555 1555 1.34 LINK C ASN A 93 N MSE A 94 1555 1555 1.32 LINK C MSE A 94 N PRO A 95 1555 1555 1.36 LINK C ALA A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N ALA A 120 1555 1555 1.35 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C ASP B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N LEU B 22 1555 1555 1.33 LINK C LYS B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N LEU B 44 1555 1555 1.33 LINK C ASN B 93 N MSE B 94 1555 1555 1.33 LINK C MSE B 94 N PRO B 95 1555 1555 1.36 LINK C ALA B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N ALA B 120 1555 1555 1.33 CISPEP 1 GLN A 51 PRO A 52 0 6.11 CISPEP 2 GLN B 51 PRO B 52 0 7.63 SITE 1 AC1 8 ARG A 70 HIS A 144 ARG A 173 PO4 A 241 SITE 2 AC1 8 HOH A1087 HOH A1366 HOH A1383 HOH A1452 SITE 1 AC2 10 SER A 39 THR A 40 LYS A 196 HOH A1010 SITE 2 AC2 10 HOH A1113 HOH A1264 HOH A1310 HOH A1380 SITE 3 AC2 10 HOH A1414 HOH A1575 SITE 1 AC3 9 GLY A 140 ALA A 141 ASP A 142 HIS A 144 SITE 2 AC3 9 PO4 A 239 HOH A1188 HOH A1313 HOH A1387 SITE 3 AC3 9 HOH A1541 SITE 1 AC4 8 ARG B 70 HIS B 144 ARG B 173 PO4 B 241 SITE 2 AC4 8 HOH B1111 HOH B1173 HOH B1205 HOH B1518 SITE 1 AC5 6 SER B 39 THR B 40 LYS B 196 HOH B1170 SITE 2 AC5 6 HOH B1200 HOH B1292 SITE 1 AC6 7 GLY B 140 ALA B 141 ASP B 142 HIS B 144 SITE 2 AC6 7 PO4 B 239 HOH B1173 HOH B1497 SITE 1 AC7 14 HIS A 4 ILE A 203 HIS A 204 TRP A 227 SITE 2 AC7 14 ILE A 237 HIS B 4 ILE B 203 HIS B 204 SITE 3 AC7 14 TRP B 227 ILE B 237 PE5 B 243 PEG B 244 SITE 4 AC7 14 HOH B1464 HOH B1562 SITE 1 AC8 6 ILE A 237 HIS B 204 THR B 205 THR B 206 SITE 2 AC8 6 PRO B 207 2PE B 242 SITE 1 AC9 4 ASP A 20 ALA A 23 TYR A 24 ARG A 186 SITE 1 BC1 8 THR A 205 THR A 206 PRO A 207 HOH A1423 SITE 2 BC1 8 ILE B 237 ALA B 238 2PE B 242 HOH B1505 CRYST1 85.078 85.078 181.080 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011754 0.006786 0.000000 0.00000 SCALE2 0.000000 0.013572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005522 0.00000 HETATM 1 N MSE A 1 10.904 44.914 6.747 1.00 33.50 N HETATM 2 CA MSE A 1 9.666 45.759 6.772 1.00 31.80 C HETATM 3 C MSE A 1 8.735 45.320 7.911 1.00 30.28 C HETATM 4 O MSE A 1 8.848 44.192 8.425 1.00 28.25 O HETATM 5 CB MSE A 1 9.000 45.803 5.385 1.00 33.93 C HETATM 6 CG MSE A 1 8.299 44.552 4.920 1.00 39.52 C HETATM 7 SE MSE A 1 6.346 44.556 5.419 1.00 58.48 SE HETATM 8 CE MSE A 1 5.507 44.564 3.556 1.00 46.80 C