HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-DEC-04 1Y89
TITLE CRYSTAL STRUCTURE OF DEVB PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DEVB PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961;
SOURCE 3 ORGANISM_TAXID: 243277;
SOURCE 4 STRAIN: O1 BIOVAR ELTOR STR. N16961;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, MIDWEST
KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR K.LAZARSKI,M.CYMBOROWSKI,M.CHRUSZCZ,H.ZHENG,R.ZHANG,L.LEZONDRA,
AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG)
REVDAT 6 30-OCT-24 1Y89 1 REMARK
REVDAT 5 13-APR-22 1Y89 1 AUTHOR JRNL REMARK SEQADV
REVDAT 5 2 1 HETSYN LINK
REVDAT 4 13-JUL-11 1Y89 1 VERSN
REVDAT 3 24-FEB-09 1Y89 1 VERSN
REVDAT 2 02-MAY-06 1Y89 1 JRNL
REVDAT 1 25-JAN-05 1Y89 0
JRNL AUTH K.LAZARSKI,M.CYMBOROWSKI,M.CHRUSZCZ,H.ZHENG,R.ZHANG,
JRNL AUTH 2 L.LEZONDRA,A.JOACHIMIAK,W.MINOR
JRNL TITL CRYSTAL STRUCTURE OF DEVB PROTEIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0005
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.42
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 49488
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.161
REMARK 3 R VALUE (WORKING SET) : 0.159
REMARK 3 FREE R VALUE : 0.194
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2594
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3584
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.1720
REMARK 3 BIN FREE R VALUE SET COUNT : 194
REMARK 3 BIN FREE R VALUE : 0.2470
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3640
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 79
REMARK 3 SOLVENT ATOMS : 597
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.96
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.05000
REMARK 3 B22 (A**2) : 0.05000
REMARK 3 B33 (A**2) : -0.08000
REMARK 3 B12 (A**2) : 0.03000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.119
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.619
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3822 ; 0.017 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5197 ; 1.420 ; 1.956
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.937 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;38.429 ;25.394
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;12.913 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.078 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.102 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2888 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1844 ; 0.203 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2576 ; 0.305 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 531 ; 0.161 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.216 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.195 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2459 ; 1.015 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3831 ; 1.332 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 2.697 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 3.822 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1
REMARK 3
REMARK 3 NCS GROUP NUMBER : 1
REMARK 3 CHAIN NAMES : A B
REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1
REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE
REMARK 3 1 A 1 A 238 4
REMARK 3 1 B 1 B 238 4
REMARK 3 GROUP CHAIN COUNT RMS WEIGHT
REMARK 3 MEDIUM POSITIONAL 1 A (A): 1802 ; 0.25 ; 0.50
REMARK 3 MEDIUM THERMAL 1 A (A**2): 1802 ; 0.89 ; 2.00
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 238
REMARK 3 ORIGIN FOR THE GROUP (A): 4.7760 30.6740 16.5360
REMARK 3 T TENSOR
REMARK 3 T11: -0.1147 T22: -0.0301
REMARK 3 T33: -0.0311 T12: 0.0361
REMARK 3 T13: 0.0156 T23: 0.0085
REMARK 3 L TENSOR
REMARK 3 L11: 0.8900 L22: 0.8288
REMARK 3 L33: 1.4663 L12: -0.0026
REMARK 3 L13: 0.2487 L23: -0.1956
REMARK 3 S TENSOR
REMARK 3 S11: 0.0172 S12: 0.0488 S13: -0.0208
REMARK 3 S21: 0.0489 S22: -0.0202 S23: -0.0296
REMARK 3 S31: 0.0262 S32: 0.0730 S33: 0.0030
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 1 B 238
REMARK 3 ORIGIN FOR THE GROUP (A): -5.0530 56.4970 -6.7890
REMARK 3 T TENSOR
REMARK 3 T11: -0.0399 T22: -0.0772
REMARK 3 T33: -0.0110 T12: 0.0345
REMARK 3 T13: 0.0119 T23: 0.0064
REMARK 3 L TENSOR
REMARK 3 L11: 0.6349 L22: 1.2934
REMARK 3 L33: 1.6743 L12: -0.3402
REMARK 3 L13: 0.4630 L23: -0.7915
REMARK 3 S TENSOR
REMARK 3 S11: 0.0035 S12: -0.0429 S13: -0.0341
REMARK 3 S21: -0.0353 S22: -0.0397 S23: -0.0756
REMARK 3 S31: 0.0715 S32: 0.0143 S33: 0.0362
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 1Y89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-04.
REMARK 100 THE DEPOSITION ID IS D_1000031240.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-AUG-04
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940
REMARK 200 MONOCHROMATOR : SI 111 CHANNEL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : SBC-2
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52566
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 5.600
REMARK 200 R MERGE (I) : 0.09200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.30
REMARK 200 R MERGE FOR SHELL (I) : 0.50100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.440
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 66.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG-300, HEPES PH 7.5, 0.2 M NACL,
REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.36000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.72000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.72000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.36000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 88 -67.02 -125.28
REMARK 500 HIS A 100 74.44 -110.79
REMARK 500 ALA A 146 -131.65 43.33
REMARK 500 LEU B 88 -66.84 -125.85
REMARK 500 HIS B 100 75.91 -115.17
REMARK 500 ALA B 146 -133.60 47.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600 THE LIGANDS LABELLED PE5 ARE FRAGMENTS OF PEG
REMARK 600 MOLECULES
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PE5 A 242
REMARK 610 PE5 B 243
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 239
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 240
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 241
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 239
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 240
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 241
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 242
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 B 243
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 242
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 244
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: APC27066 RELATED DB: TARGETDB
DBREF 1Y89 A 1 238 GB 9658331 AAF96794 1 238
DBREF 1Y89 B 1 238 GB 9658331 AAF96794 1 238
SEQADV 1Y89 MSE A 1 GB 9658331 MET 1 MODIFIED RESIDUE
SEQADV 1Y89 MSE A 21 GB 9658331 MET 21 MODIFIED RESIDUE
SEQADV 1Y89 MSE A 43 GB 9658331 MET 43 MODIFIED RESIDUE
SEQADV 1Y89 MSE A 94 GB 9658331 MET 94 MODIFIED RESIDUE
SEQADV 1Y89 MSE A 119 GB 9658331 MET 119 MODIFIED RESIDUE
SEQADV 1Y89 MSE B 1 GB 9658331 MET 1 MODIFIED RESIDUE
SEQADV 1Y89 MSE B 21 GB 9658331 MET 21 MODIFIED RESIDUE
SEQADV 1Y89 MSE B 43 GB 9658331 MET 43 MODIFIED RESIDUE
SEQADV 1Y89 MSE B 94 GB 9658331 MET 94 MODIFIED RESIDUE
SEQADV 1Y89 MSE B 119 GB 9658331 MET 119 MODIFIED RESIDUE
SEQRES 1 A 238 MSE ILE ASN HIS LYS ILE PHE PRO THR ALA ASP ALA VAL
SEQRES 2 A 238 VAL LYS SER LEU ALA ASP ASP MSE LEU ALA TYR SER GLN
SEQRES 3 A 238 GLN GLY GLN PRO VAL HIS ILE SER LEU SER GLY GLY SER
SEQRES 4 A 238 THR PRO LYS MSE LEU PHE LYS LEU LEU ALA SER GLN PRO
SEQRES 5 A 238 TYR ALA ASN ASP ILE GLN TRP LYS ASN LEU HIS PHE TRP
SEQRES 6 A 238 TRP GLY ASP GLU ARG CYS VAL ALA PRO ASP ASP ALA GLU
SEQRES 7 A 238 SER ASN TYR GLY GLU ALA ASN ALA LEU LEU PHE SER LYS
SEQRES 8 A 238 ILE ASN MSE PRO ALA GLN ASN ILE HIS ARG ILE LEU GLY
SEQRES 9 A 238 GLU ASN GLU PRO GLN ALA GLU ALA GLU ARG PHE ALA GLN
SEQRES 10 A 238 ALA MSE ALA HIS VAL ILE PRO THR GLU ASN GLY THR PRO
SEQRES 11 A 238 VAL PHE ASP TRP ILE LEU LEU GLY VAL GLY ALA ASP GLY
SEQRES 12 A 238 HIS THR ALA SER LEU PHE PRO GLY GLN THR ASP TYR ALA
SEQRES 13 A 238 ASP ALA ASN LEU SER VAL VAL ALA SER HIS PRO GLU SER
SEQRES 14 A 238 GLY GLN LEU ARG VAL SER LYS THR ALA LYS VAL LEU GLN
SEQRES 15 A 238 ALA ALA LYS ARG ILE SER TYR LEU VAL LEU GLY ALA GLY
SEQRES 16 A 238 LYS ALA GLU ILE VAL GLU GLN ILE HIS THR THR PRO ALA
SEQRES 17 A 238 GLU GLN LEU PRO TYR PRO ALA ALA LYS ILE HIS SER THR
SEQRES 18 A 238 SER GLY VAL THR GLU TRP TYR LEU ASP SER ASP ALA ALA
SEQRES 19 A 238 ALA LYS ILE ALA
SEQRES 1 B 238 MSE ILE ASN HIS LYS ILE PHE PRO THR ALA ASP ALA VAL
SEQRES 2 B 238 VAL LYS SER LEU ALA ASP ASP MSE LEU ALA TYR SER GLN
SEQRES 3 B 238 GLN GLY GLN PRO VAL HIS ILE SER LEU SER GLY GLY SER
SEQRES 4 B 238 THR PRO LYS MSE LEU PHE LYS LEU LEU ALA SER GLN PRO
SEQRES 5 B 238 TYR ALA ASN ASP ILE GLN TRP LYS ASN LEU HIS PHE TRP
SEQRES 6 B 238 TRP GLY ASP GLU ARG CYS VAL ALA PRO ASP ASP ALA GLU
SEQRES 7 B 238 SER ASN TYR GLY GLU ALA ASN ALA LEU LEU PHE SER LYS
SEQRES 8 B 238 ILE ASN MSE PRO ALA GLN ASN ILE HIS ARG ILE LEU GLY
SEQRES 9 B 238 GLU ASN GLU PRO GLN ALA GLU ALA GLU ARG PHE ALA GLN
SEQRES 10 B 238 ALA MSE ALA HIS VAL ILE PRO THR GLU ASN GLY THR PRO
SEQRES 11 B 238 VAL PHE ASP TRP ILE LEU LEU GLY VAL GLY ALA ASP GLY
SEQRES 12 B 238 HIS THR ALA SER LEU PHE PRO GLY GLN THR ASP TYR ALA
SEQRES 13 B 238 ASP ALA ASN LEU SER VAL VAL ALA SER HIS PRO GLU SER
SEQRES 14 B 238 GLY GLN LEU ARG VAL SER LYS THR ALA LYS VAL LEU GLN
SEQRES 15 B 238 ALA ALA LYS ARG ILE SER TYR LEU VAL LEU GLY ALA GLY
SEQRES 16 B 238 LYS ALA GLU ILE VAL GLU GLN ILE HIS THR THR PRO ALA
SEQRES 17 B 238 GLU GLN LEU PRO TYR PRO ALA ALA LYS ILE HIS SER THR
SEQRES 18 B 238 SER GLY VAL THR GLU TRP TYR LEU ASP SER ASP ALA ALA
SEQRES 19 B 238 ALA LYS ILE ALA
MODRES 1Y89 MSE A 1 MET SELENOMETHIONINE
MODRES 1Y89 MSE A 21 MET SELENOMETHIONINE
MODRES 1Y89 MSE A 43 MET SELENOMETHIONINE
MODRES 1Y89 MSE A 94 MET SELENOMETHIONINE
MODRES 1Y89 MSE A 119 MET SELENOMETHIONINE
MODRES 1Y89 MSE B 1 MET SELENOMETHIONINE
MODRES 1Y89 MSE B 21 MET SELENOMETHIONINE
MODRES 1Y89 MSE B 43 MET SELENOMETHIONINE
MODRES 1Y89 MSE B 94 MET SELENOMETHIONINE
MODRES 1Y89 MSE B 119 MET SELENOMETHIONINE
HET MSE A 1 8
HET MSE A 21 8
HET MSE A 43 8
HET MSE A 94 8
HET MSE A 119 8
HET MSE B 1 8
HET MSE B 21 8
HET MSE B 43 8
HET MSE B 94 8
HET MSE B 119 8
HET PO4 A 239 5
HET PO4 A 240 5
HET PO4 A 241 5
HET PE5 A 242 7
HET PO4 B 239 5
HET PO4 B 240 5
HET PO4 B 241 5
HET 2PE B 242 28
HET PE5 B 243 7
HET PEG B 244 7
HETNAM MSE SELENOMETHIONINE
HETNAM PO4 PHOSPHATE ION
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETNAM 2PE NONAETHYLENE GLYCOL
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
FORMUL 1 MSE 10(C5 H11 N O2 SE)
FORMUL 3 PO4 6(O4 P 3-)
FORMUL 6 PE5 2(C18 H38 O9)
FORMUL 10 2PE C18 H38 O10
FORMUL 12 PEG C4 H10 O3
FORMUL 13 HOH *597(H2 O)
HELIX 1 1 THR A 9 GLN A 26 1 18
HELIX 2 2 GLY A 38 ALA A 49 1 12
HELIX 3 3 PRO A 52 ILE A 57 1 6
HELIX 4 4 GLN A 58 LYS A 60 5 3
HELIX 5 5 SER A 79 LEU A 88 1 10
HELIX 6 6 PHE A 89 ILE A 92 5 4
HELIX 7 7 PRO A 95 ILE A 99 5 5
HELIX 8 8 GLU A 107 ILE A 123 1 17
HELIX 9 9 THR A 177 ALA A 184 1 8
HELIX 10 10 GLY A 193 GLY A 195 5 3
HELIX 11 11 LYS A 196 THR A 206 1 11
HELIX 12 12 PRO A 207 LEU A 211 5 5
HELIX 13 13 TYR A 213 ILE A 218 1 6
HELIX 14 14 SER A 231 ALA A 235 1 5
HELIX 15 15 THR B 9 GLN B 26 1 18
HELIX 16 16 GLY B 38 ALA B 49 1 12
HELIX 17 17 PRO B 52 ILE B 57 1 6
HELIX 18 18 GLN B 58 LYS B 60 5 3
HELIX 19 19 SER B 79 LEU B 88 1 10
HELIX 20 20 PHE B 89 ILE B 92 5 4
HELIX 21 21 PRO B 95 ILE B 99 5 5
HELIX 22 22 GLU B 107 ILE B 123 1 17
HELIX 23 23 THR B 177 ALA B 184 1 8
HELIX 24 24 GLY B 193 GLY B 195 5 3
HELIX 25 25 LYS B 196 THR B 206 1 11
HELIX 26 26 PRO B 207 LEU B 211 5 5
HELIX 27 27 TYR B 213 ILE B 218 1 6
SHEET 1 A12 LEU A 62 TRP A 66 0
SHEET 2 A12 VAL A 31 LEU A 35 1 N LEU A 35 O TRP A 65
SHEET 3 A12 TRP A 134 LEU A 137 1 O LEU A 136 N SER A 34
SHEET 4 A12 ARG A 186 VAL A 191 1 O LEU A 190 N LEU A 137
SHEET 5 A12 VAL A 224 ASP A 230 1 O GLU A 226 N TYR A 189
SHEET 6 A12 ILE A 2 PHE A 7 1 N LYS A 5 O TRP A 227
SHEET 7 A12 ILE B 2 PHE B 7 -1 O ILE B 6 N ILE A 2
SHEET 8 A12 VAL B 224 ASP B 230 1 O TRP B 227 N LYS B 5
SHEET 9 A12 ARG B 186 VAL B 191 1 N TYR B 189 O TYR B 228
SHEET 10 A12 TRP B 134 LEU B 137 1 N LEU B 137 O SER B 188
SHEET 11 A12 VAL B 31 LEU B 35 1 N SER B 34 O LEU B 136
SHEET 12 A12 LEU B 62 TRP B 66 1 O HIS B 63 N ILE B 33
SHEET 1 B 3 ASP A 68 ARG A 70 0
SHEET 2 B 3 LEU A 172 LYS A 176 -1 O VAL A 174 N GLU A 69
SHEET 3 B 3 SER A 161 SER A 165 -1 N ALA A 164 O ARG A 173
SHEET 1 C 2 THR A 125 GLU A 126 0
SHEET 2 C 2 THR A 129 PRO A 130 -1 O THR A 129 N GLU A 126
SHEET 1 D 3 ASP B 68 ARG B 70 0
SHEET 2 D 3 LEU B 172 LYS B 176 -1 O VAL B 174 N GLU B 69
SHEET 3 D 3 SER B 161 SER B 165 -1 N VAL B 162 O SER B 175
SHEET 1 E 2 THR B 125 GLU B 126 0
SHEET 2 E 2 THR B 129 PRO B 130 -1 O THR B 129 N GLU B 126
LINK C MSE A 1 N ILE A 2 1555 1555 1.33
LINK C ASP A 20 N MSE A 21 1555 1555 1.34
LINK C MSE A 21 N LEU A 22 1555 1555 1.33
LINK C ALYS A 42 N MSE A 43 1555 1555 1.33
LINK C BLYS A 42 N MSE A 43 1555 1555 1.34
LINK C MSE A 43 N LEU A 44 1555 1555 1.34
LINK C ASN A 93 N MSE A 94 1555 1555 1.32
LINK C MSE A 94 N PRO A 95 1555 1555 1.36
LINK C ALA A 118 N MSE A 119 1555 1555 1.33
LINK C MSE A 119 N ALA A 120 1555 1555 1.35
LINK C MSE B 1 N ILE B 2 1555 1555 1.33
LINK C ASP B 20 N MSE B 21 1555 1555 1.33
LINK C MSE B 21 N LEU B 22 1555 1555 1.33
LINK C LYS B 42 N MSE B 43 1555 1555 1.33
LINK C MSE B 43 N LEU B 44 1555 1555 1.33
LINK C ASN B 93 N MSE B 94 1555 1555 1.33
LINK C MSE B 94 N PRO B 95 1555 1555 1.36
LINK C ALA B 118 N MSE B 119 1555 1555 1.33
LINK C MSE B 119 N ALA B 120 1555 1555 1.33
CISPEP 1 GLN A 51 PRO A 52 0 6.11
CISPEP 2 GLN B 51 PRO B 52 0 7.63
SITE 1 AC1 8 ARG A 70 HIS A 144 ARG A 173 PO4 A 241
SITE 2 AC1 8 HOH A1087 HOH A1366 HOH A1383 HOH A1452
SITE 1 AC2 10 SER A 39 THR A 40 LYS A 196 HOH A1010
SITE 2 AC2 10 HOH A1113 HOH A1264 HOH A1310 HOH A1380
SITE 3 AC2 10 HOH A1414 HOH A1575
SITE 1 AC3 9 GLY A 140 ALA A 141 ASP A 142 HIS A 144
SITE 2 AC3 9 PO4 A 239 HOH A1188 HOH A1313 HOH A1387
SITE 3 AC3 9 HOH A1541
SITE 1 AC4 8 ARG B 70 HIS B 144 ARG B 173 PO4 B 241
SITE 2 AC4 8 HOH B1111 HOH B1173 HOH B1205 HOH B1518
SITE 1 AC5 6 SER B 39 THR B 40 LYS B 196 HOH B1170
SITE 2 AC5 6 HOH B1200 HOH B1292
SITE 1 AC6 7 GLY B 140 ALA B 141 ASP B 142 HIS B 144
SITE 2 AC6 7 PO4 B 239 HOH B1173 HOH B1497
SITE 1 AC7 14 HIS A 4 ILE A 203 HIS A 204 TRP A 227
SITE 2 AC7 14 ILE A 237 HIS B 4 ILE B 203 HIS B 204
SITE 3 AC7 14 TRP B 227 ILE B 237 PE5 B 243 PEG B 244
SITE 4 AC7 14 HOH B1464 HOH B1562
SITE 1 AC8 6 ILE A 237 HIS B 204 THR B 205 THR B 206
SITE 2 AC8 6 PRO B 207 2PE B 242
SITE 1 AC9 4 ASP A 20 ALA A 23 TYR A 24 ARG A 186
SITE 1 BC1 8 THR A 205 THR A 206 PRO A 207 HOH A1423
SITE 2 BC1 8 ILE B 237 ALA B 238 2PE B 242 HOH B1505
CRYST1 85.078 85.078 181.080 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011754 0.006786 0.000000 0.00000
SCALE2 0.000000 0.013572 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005522 0.00000
HETATM 1 N MSE A 1 10.904 44.914 6.747 1.00 33.50 N
HETATM 2 CA MSE A 1 9.666 45.759 6.772 1.00 31.80 C
HETATM 3 C MSE A 1 8.735 45.320 7.911 1.00 30.28 C
HETATM 4 O MSE A 1 8.848 44.192 8.425 1.00 28.25 O
HETATM 5 CB MSE A 1 9.000 45.803 5.385 1.00 33.93 C
HETATM 6 CG MSE A 1 8.299 44.552 4.920 1.00 39.52 C
HETATM 7 SE MSE A 1 6.346 44.556 5.419 1.00 58.48 SE
HETATM 8 CE MSE A 1 5.507 44.564 3.556 1.00 46.80 C