HEADER SIGNALING PROTEIN 17-DEC-04 1YA0 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN SMG7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMG-7 TRANSCRIPT VARIANT 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (1-497); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS ALPHA-HELICAL REPEAT, TETRATRICOPETIDE REPEAT (TPR), 14-3-3, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.FUKUHARA,J.EBERT,L.UNTERHOLZNER,D.LINDNER,E.IZAURRALDE,E.CONTI REVDAT 3 14-FEB-24 1YA0 1 REMARK REVDAT 2 24-FEB-09 1YA0 1 VERSN REVDAT 1 15-MAR-05 1YA0 0 JRNL AUTH N.FUKUHARA,J.EBERT,L.UNTERHOLZNER,D.LINDNER,E.IZAURRALDE, JRNL AUTH 2 E.CONTI JRNL TITL SMG7 IS A 14-3-3-LIKE ADAPTOR IN THE NONSENSE-MEDIATED MRNA JRNL TITL 2 DECAY PATHWAY. JRNL REF MOL.CELL V. 17 537 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15721257 JRNL DOI 10.1016/J.MOLCEL.2005.01.010 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 44289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2219 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.613 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.04 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.114 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32400 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 6.5 TO 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.00900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.31070 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.02485 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.31070 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.00900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.02485 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 112 REMARK 465 PHE A 113 REMARK 465 ASN A 114 REMARK 465 VAL A 115 REMARK 465 ASP A 116 REMARK 465 LEU A 117 REMARK 465 PRO A 118 REMARK 465 CYS A 119 REMARK 465 ARG A 120 REMARK 465 VAL A 121 REMARK 465 LYS A 122 REMARK 465 SER A 123 REMARK 465 SER A 124 REMARK 465 GLN A 125 REMARK 465 LEU A 126 REMARK 465 GLY A 127 REMARK 465 ILE A 128 REMARK 465 ILE A 129 REMARK 465 SER A 130 REMARK 465 ASN A 131 REMARK 465 LYS A 132 REMARK 465 GLN A 133 REMARK 465 THR A 134 REMARK 465 HIS A 135 REMARK 465 THR A 136 REMARK 465 SER A 137 REMARK 465 ALA A 138 REMARK 465 ILE A 139 REMARK 465 VAL A 140 REMARK 465 LYS A 141 REMARK 465 PRO A 142 REMARK 465 GLU A 350 REMARK 465 SER A 408 REMARK 465 GLN A 441 REMARK 465 GLY A 442 REMARK 465 ILE A 443 REMARK 465 THR A 444 REMARK 465 GLY A 445 REMARK 465 ASP A 446 REMARK 465 ARG B 120 REMARK 465 VAL B 121 REMARK 465 LYS B 122 REMARK 465 SER B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 LEU B 126 REMARK 465 GLY B 127 REMARK 465 ILE B 128 REMARK 465 ILE B 129 REMARK 465 SER B 130 REMARK 465 ASN B 131 REMARK 465 LYS B 132 REMARK 465 GLN B 133 REMARK 465 THR B 134 REMARK 465 HIS B 135 REMARK 465 THR B 136 REMARK 465 SER B 137 REMARK 465 ALA B 138 REMARK 465 ILE B 139 REMARK 465 VAL B 140 REMARK 465 LYS B 141 REMARK 465 GLU B 350 REMARK 465 SER B 351 REMARK 465 GLN B 352 REMARK 465 GLY B 439 REMARK 465 HIS B 440 REMARK 465 GLN B 441 REMARK 465 GLY B 442 REMARK 465 ILE B 443 REMARK 465 THR B 444 REMARK 465 GLY B 445 REMARK 465 ASP B 446 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 CG REMARK 480 LEU A 3 CG CD1 CD2 REMARK 480 GLN A 7 CG CD OE1 NE2 REMARK 480 LEU A 9 CG CD1 CD2 REMARK 480 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 15 CG CD1 CD2 REMARK 480 THR A 20 OG1 CG2 REMARK 480 ASP A 21 CG OD1 OD2 REMARK 480 SER A 22 OG REMARK 480 LYS A 23 CG CD CE NZ REMARK 480 LEU A 24 CG CD1 CD2 REMARK 480 GLU A 28 CG CD OE1 OE2 REMARK 480 VAL A 29 CG1 CG2 REMARK 480 LYS A 54 CG CD CE NZ REMARK 480 LYS A 77 CG CD CE NZ REMARK 480 ASN A 78 CG OD1 ND2 REMARK 480 ARG A 79 CZ NH1 NH2 REMARK 480 ASN A 81 CG OD1 ND2 REMARK 480 ASN A 83 CG OD1 ND2 REMARK 480 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 86 CD OE1 OE2 REMARK 480 GLN A 88 CG CD OE1 NE2 REMARK 480 THR A 111 OG1 CG2 REMARK 480 GLN A 143 CG CD OE1 NE2 REMARK 480 CYS A 147 SG REMARK 480 ASN A 166 CG OD1 ND2 REMARK 480 ARG A 176 NH1 NH2 REMARK 480 LYS A 199 CD CE NZ REMARK 480 LYS A 216 CD CE NZ REMARK 480 LYS A 228 CD CE NZ REMARK 480 LYS A 232 CE NZ REMARK 480 LYS A 241 CD CE NZ REMARK 480 GLN A 317 CG CD OE1 NE2 REMARK 480 GLN A 322 CG CD OE1 NE2 REMARK 480 ASN A 349 CG OD1 ND2 REMARK 480 SER A 351 OG REMARK 480 GLN A 352 CG CD OE1 NE2 REMARK 480 GLU A 353 CG CD OE1 OE2 REMARK 480 GLU A 354 CG CD OE1 OE2 REMARK 480 SER A 355 OG REMARK 480 TYR A 356 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP A 406 CG OD1 OD2 REMARK 480 ILE A 410 CG1 CG2 CD1 REMARK 480 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 438 CG CD CE NZ REMARK 480 HIS A 440 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 447 CG CD CE NZ REMARK 480 GLN A 450 CG CD OE1 NE2 REMARK 480 ARG A 452 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 457 CG CD OE1 NE2 REMARK 480 ARG A 472 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 478 CG OD1 ND2 REMARK 480 GLU A 479 CG CD OE1 OE2 REMARK 480 LYS A 482 CG CD CE NZ REMARK 480 GLU B 13 CG CD OE1 OE2 REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 LEU B 24 CG CD1 CD2 REMARK 480 LYS B 55 CD CE NZ REMARK 480 LYS B 77 CG CD CE NZ REMARK 480 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 107 CG CD OE1 NE2 REMARK 480 CYS B 119 SG REMARK 480 GLN B 143 CG CD OE1 NE2 REMARK 480 LYS B 199 CD CE NZ REMARK 480 LYS B 216 CE NZ REMARK 480 LYS B 228 CD CE NZ REMARK 480 LYS B 232 CE NZ REMARK 480 ARG B 237 CD NE CZ NH1 NH2 REMARK 480 VAL B 240 CG1 CG2 REMARK 480 LYS B 264 CD CE NZ REMARK 480 LYS B 281 CE NZ REMARK 480 GLN B 317 CD OE1 NE2 REMARK 480 GLN B 348 CG CD OE1 NE2 REMARK 480 ASN B 349 CG OD1 ND2 REMARK 480 GLU B 353 CG CD OE1 OE2 REMARK 480 GLU B 354 CG CD OE1 OE2 REMARK 480 ILE B 410 CG1 CG2 CD1 REMARK 480 LYS B 438 CG CD CE NZ REMARK 480 LYS B 447 CG CD CE NZ REMARK 480 GLU B 448 CG CD OE1 OE2 REMARK 480 GLN B 450 CG CD OE1 NE2 REMARK 480 ARG B 452 CZ NH1 NH2 REMARK 480 ARG B 472 NE CZ NH1 NH2 REMARK 480 ASP B 496 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 353 OD1 ASN B 357 1.11 REMARK 500 O SER B 411 N ALA B 412 1.67 REMARK 500 NE2 GLN A 75 NH1 ARG A 79 1.75 REMARK 500 O SER B 408 N SER B 409 1.80 REMARK 500 O GLU A 354 OD1 ASN A 357 1.89 REMARK 500 OD1 ASP A 18 CD1 LEU A 24 2.00 REMARK 500 N ALA A 35 O HOH A 501 2.06 REMARK 500 O SER A 351 N GLU A 353 2.08 REMARK 500 O THR A 31 O HOH A 501 2.10 REMARK 500 N GLY B 74 O HOH B 517 2.17 REMARK 500 O TYR A 359 O HOH A 525 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 356 C ASN B 357 N -0.151 REMARK 500 SER B 408 C SER B 409 N -0.229 REMARK 500 SER B 409 C ILE B 410 N -0.147 REMARK 500 SER B 411 C ALA B 412 N -0.323 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP A 496 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 ALA B 80 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO B 118 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 ASN B 357 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 SER B 408 CA - C - N ANGL. DEV. = 21.0 DEGREES REMARK 500 SER B 408 O - C - N ANGL. DEV. = -22.9 DEGREES REMARK 500 SER B 409 C - N - CA ANGL. DEV. = 27.4 DEGREES REMARK 500 SER B 409 O - C - N ANGL. DEV. = -18.5 DEGREES REMARK 500 SER B 411 CA - C - N ANGL. DEV. = 31.1 DEGREES REMARK 500 SER B 411 O - C - N ANGL. DEV. = -29.4 DEGREES REMARK 500 ALA B 412 C - N - CA ANGL. DEV. = 39.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -12.09 -46.93 REMARK 500 ASP A 21 128.17 -34.38 REMARK 500 GLU A 28 -6.99 -141.23 REMARK 500 ASP A 47 76.67 -150.83 REMARK 500 PHE A 65 -60.09 -132.06 REMARK 500 ASN A 78 119.44 5.72 REMARK 500 ARG A 79 28.01 -147.87 REMARK 500 PRO A 82 -75.59 -46.16 REMARK 500 CYS A 110 30.28 -95.39 REMARK 500 GLN A 167 66.65 -101.59 REMARK 500 LEU A 234 14.64 -69.28 REMARK 500 SER A 265 59.58 37.33 REMARK 500 ASP A 310 -169.14 -78.48 REMARK 500 THR A 315 -77.84 -116.10 REMARK 500 PRO A 346 -70.64 -54.77 REMARK 500 GLN A 352 28.41 -26.39 REMARK 500 GLU A 353 85.89 39.07 REMARK 500 GLU A 354 -16.55 96.80 REMARK 500 ASN A 357 -167.25 -103.42 REMARK 500 ALA A 358 -10.35 74.35 REMARK 500 HIS A 403 -157.76 -136.89 REMARK 500 ASP A 406 31.58 -64.65 REMARK 500 SER A 411 -29.71 -30.30 REMARK 500 ALA A 412 -15.70 69.47 REMARK 500 ARG A 432 23.58 -54.02 REMARK 500 ASN A 433 -38.77 -136.68 REMARK 500 SER A 437 -101.50 -64.90 REMARK 500 GLU A 448 -73.46 -79.97 REMARK 500 LEU A 494 -177.20 -66.95 REMARK 500 ASP A 496 -65.37 -10.57 REMARK 500 SER B 22 -38.14 -28.83 REMARK 500 LYS B 23 52.26 -92.47 REMARK 500 PHE B 65 -65.91 -129.63 REMARK 500 ASN B 78 89.25 -158.11 REMARK 500 ARG B 79 78.58 -68.41 REMARK 500 ALA B 80 -5.40 -157.19 REMARK 500 ARG B 84 -58.05 -8.49 REMARK 500 ASP B 116 20.56 -64.48 REMARK 500 LEU B 117 107.70 -35.07 REMARK 500 PRO B 118 -114.58 -26.88 REMARK 500 GLN B 143 -38.07 179.50 REMARK 500 SER B 144 -13.76 102.16 REMARK 500 GLN B 167 56.41 -109.57 REMARK 500 ALA B 214 45.18 -83.37 REMARK 500 GLU B 316 125.60 -173.24 REMARK 500 SER B 355 -76.47 -114.56 REMARK 500 ALA B 358 2.26 90.31 REMARK 500 ALA B 412 -23.80 1.35 REMARK 500 PHE B 436 35.72 -90.78 REMARK 500 SER B 437 -112.98 -103.82 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 408 SER B 409 128.10 REMARK 500 SER B 409 ILE B 410 145.86 REMARK 500 SER B 411 ALA B 412 -111.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 84 18.33 REMARK 500 SER B 408 13.09 REMARK 500 SER B 409 16.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 499 DBREF 1YA0 A 1 497 UNP Q92540 SMG7_HUMAN 1 497 DBREF 1YA0 B 1 497 UNP Q92540 SMG7_HUMAN 1 497 SEQRES 1 A 497 MET SER LEU GLN SER ALA GLN TYR LEU ARG GLN ALA GLU SEQRES 2 A 497 VAL LEU LYS ALA ASP MET THR ASP SER LYS LEU GLY PRO SEQRES 3 A 497 ALA GLU VAL TRP THR SER ARG GLN ALA LEU GLN ASP LEU SEQRES 4 A 497 TYR GLN LYS MET LEU VAL THR ASP LEU GLU TYR ALA LEU SEQRES 5 A 497 ASP LYS LYS VAL GLU GLN ASP LEU TRP ASN HIS ALA PHE SEQRES 6 A 497 LYS ASN GLN ILE THR THR LEU GLN GLY GLN ALA LYS ASN SEQRES 7 A 497 ARG ALA ASN PRO ASN ARG SER GLU VAL GLN ALA ASN LEU SEQRES 8 A 497 SER LEU PHE LEU GLU ALA ALA SER GLY PHE TYR THR GLN SEQRES 9 A 497 LEU LEU GLN GLU LEU CYS THR VAL PHE ASN VAL ASP LEU SEQRES 10 A 497 PRO CYS ARG VAL LYS SER SER GLN LEU GLY ILE ILE SER SEQRES 11 A 497 ASN LYS GLN THR HIS THR SER ALA ILE VAL LYS PRO GLN SEQRES 12 A 497 SER SER SER CYS SER TYR ILE CYS GLN HIS CYS LEU VAL SEQRES 13 A 497 HIS LEU GLY ASP ILE ALA ARG TYR ARG ASN GLN THR SER SEQRES 14 A 497 GLN ALA GLU SER TYR TYR ARG HIS ALA ALA GLN LEU VAL SEQRES 15 A 497 PRO SER ASN GLY GLN PRO TYR ASN GLN LEU ALA ILE LEU SEQRES 16 A 497 ALA SER SER LYS GLY ASP HIS LEU THR THR ILE PHE TYR SEQRES 17 A 497 TYR CYS ARG SER ILE ALA VAL LYS PHE PRO PHE PRO ALA SEQRES 18 A 497 ALA SER THR ASN LEU GLN LYS ALA LEU SER LYS ALA LEU SEQRES 19 A 497 GLU SER ARG ASP GLU VAL LYS THR LYS TRP GLY VAL SER SEQRES 20 A 497 ASP PHE ILE LYS ALA PHE ILE LYS PHE HIS GLY HIS VAL SEQRES 21 A 497 TYR LEU SER LYS SER LEU GLU LYS LEU SER PRO LEU ARG SEQRES 22 A 497 GLU LYS LEU GLU GLU GLN PHE LYS GLU LEU LEU PHE GLN SEQRES 23 A 497 LYS ALA PHE ASN SER GLN GLN LEU VAL HIS VAL THR VAL SEQRES 24 A 497 ILE ASN LEU PHE GLN LEU HIS HIS LEU ARG ASP PHE SER SEQRES 25 A 497 ASN GLU THR GLU GLN HIS THR TYR SER GLN ASP GLU GLN SEQRES 26 A 497 LEU CYS TRP THR GLN LEU LEU ALA LEU PHE MET SER PHE SEQRES 27 A 497 LEU GLY ILE LEU CYS LYS CYS PRO LEU GLN ASN GLU SER SEQRES 28 A 497 GLN GLU GLU SER TYR ASN ALA TYR PRO LEU PRO ALA VAL SEQRES 29 A 497 LYS VAL SER MET ASP TRP LEU ARG LEU ARG PRO ARG VAL SEQRES 30 A 497 PHE GLN GLU ALA VAL VAL ASP GLU ARG GLN TYR ILE TRP SEQRES 31 A 497 PRO TRP LEU ILE SER LEU LEU ASN SER PHE HIS PRO HIS SEQRES 32 A 497 GLU GLU ASP LEU SER SER ILE SER ALA THR PRO LEU PRO SEQRES 33 A 497 GLU GLU PHE GLU LEU GLN GLY PHE LEU ALA LEU ARG PRO SEQRES 34 A 497 SER PHE ARG ASN LEU ASP PHE SER LYS GLY HIS GLN GLY SEQRES 35 A 497 ILE THR GLY ASP LYS GLU GLY GLN GLN ARG ARG ILE ARG SEQRES 36 A 497 GLN GLN ARG LEU ILE SER ILE GLY LYS TRP ILE ALA ASP SEQRES 37 A 497 ASN GLN PRO ARG LEU ILE GLN CYS GLU ASN GLU VAL GLY SEQRES 38 A 497 LYS LEU LEU PHE ILE THR GLU ILE PRO GLU LEU ILE LEU SEQRES 39 A 497 GLU ASP PRO SEQRES 1 B 497 MET SER LEU GLN SER ALA GLN TYR LEU ARG GLN ALA GLU SEQRES 2 B 497 VAL LEU LYS ALA ASP MET THR ASP SER LYS LEU GLY PRO SEQRES 3 B 497 ALA GLU VAL TRP THR SER ARG GLN ALA LEU GLN ASP LEU SEQRES 4 B 497 TYR GLN LYS MET LEU VAL THR ASP LEU GLU TYR ALA LEU SEQRES 5 B 497 ASP LYS LYS VAL GLU GLN ASP LEU TRP ASN HIS ALA PHE SEQRES 6 B 497 LYS ASN GLN ILE THR THR LEU GLN GLY GLN ALA LYS ASN SEQRES 7 B 497 ARG ALA ASN PRO ASN ARG SER GLU VAL GLN ALA ASN LEU SEQRES 8 B 497 SER LEU PHE LEU GLU ALA ALA SER GLY PHE TYR THR GLN SEQRES 9 B 497 LEU LEU GLN GLU LEU CYS THR VAL PHE ASN VAL ASP LEU SEQRES 10 B 497 PRO CYS ARG VAL LYS SER SER GLN LEU GLY ILE ILE SER SEQRES 11 B 497 ASN LYS GLN THR HIS THR SER ALA ILE VAL LYS PRO GLN SEQRES 12 B 497 SER SER SER CYS SER TYR ILE CYS GLN HIS CYS LEU VAL SEQRES 13 B 497 HIS LEU GLY ASP ILE ALA ARG TYR ARG ASN GLN THR SER SEQRES 14 B 497 GLN ALA GLU SER TYR TYR ARG HIS ALA ALA GLN LEU VAL SEQRES 15 B 497 PRO SER ASN GLY GLN PRO TYR ASN GLN LEU ALA ILE LEU SEQRES 16 B 497 ALA SER SER LYS GLY ASP HIS LEU THR THR ILE PHE TYR SEQRES 17 B 497 TYR CYS ARG SER ILE ALA VAL LYS PHE PRO PHE PRO ALA SEQRES 18 B 497 ALA SER THR ASN LEU GLN LYS ALA LEU SER LYS ALA LEU SEQRES 19 B 497 GLU SER ARG ASP GLU VAL LYS THR LYS TRP GLY VAL SER SEQRES 20 B 497 ASP PHE ILE LYS ALA PHE ILE LYS PHE HIS GLY HIS VAL SEQRES 21 B 497 TYR LEU SER LYS SER LEU GLU LYS LEU SER PRO LEU ARG SEQRES 22 B 497 GLU LYS LEU GLU GLU GLN PHE LYS GLU LEU LEU PHE GLN SEQRES 23 B 497 LYS ALA PHE ASN SER GLN GLN LEU VAL HIS VAL THR VAL SEQRES 24 B 497 ILE ASN LEU PHE GLN LEU HIS HIS LEU ARG ASP PHE SER SEQRES 25 B 497 ASN GLU THR GLU GLN HIS THR TYR SER GLN ASP GLU GLN SEQRES 26 B 497 LEU CYS TRP THR GLN LEU LEU ALA LEU PHE MET SER PHE SEQRES 27 B 497 LEU GLY ILE LEU CYS LYS CYS PRO LEU GLN ASN GLU SER SEQRES 28 B 497 GLN GLU GLU SER TYR ASN ALA TYR PRO LEU PRO ALA VAL SEQRES 29 B 497 LYS VAL SER MET ASP TRP LEU ARG LEU ARG PRO ARG VAL SEQRES 30 B 497 PHE GLN GLU ALA VAL VAL ASP GLU ARG GLN TYR ILE TRP SEQRES 31 B 497 PRO TRP LEU ILE SER LEU LEU ASN SER PHE HIS PRO HIS SEQRES 32 B 497 GLU GLU ASP LEU SER SER ILE SER ALA THR PRO LEU PRO SEQRES 33 B 497 GLU GLU PHE GLU LEU GLN GLY PHE LEU ALA LEU ARG PRO SEQRES 34 B 497 SER PHE ARG ASN LEU ASP PHE SER LYS GLY HIS GLN GLY SEQRES 35 B 497 ILE THR GLY ASP LYS GLU GLY GLN GLN ARG ARG ILE ARG SEQRES 36 B 497 GLN GLN ARG LEU ILE SER ILE GLY LYS TRP ILE ALA ASP SEQRES 37 B 497 ASN GLN PRO ARG LEU ILE GLN CYS GLU ASN GLU VAL GLY SEQRES 38 B 497 LYS LEU LEU PHE ILE THR GLU ILE PRO GLU LEU ILE LEU SEQRES 39 B 497 GLU ASP PRO HET SO4 A 498 5 HET SO4 B 498 5 HET SO4 B 499 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *319(H2 O) HELIX 1 1 MET A 1 ALA A 17 1 17 HELIX 2 2 ASP A 18 THR A 20 5 3 HELIX 3 3 VAL A 29 ASP A 47 1 19 HELIX 4 4 ASP A 47 LYS A 55 1 9 HELIX 5 5 LYS A 55 PHE A 65 1 11 HELIX 6 6 PHE A 65 LYS A 77 1 13 HELIX 7 7 SER A 85 CYS A 110 1 26 HELIX 8 8 SER A 144 ARG A 165 1 22 HELIX 9 9 GLN A 167 VAL A 182 1 16 HELIX 10 10 GLY A 186 LYS A 199 1 14 HELIX 11 11 ASP A 201 ALA A 214 1 14 HELIX 12 12 PHE A 219 LEU A 234 1 16 HELIX 13 13 GLY A 245 SER A 263 1 19 HELIX 14 14 SER A 265 GLU A 267 5 3 HELIX 15 15 LYS A 268 GLN A 286 1 19 HELIX 16 16 ASN A 290 ARG A 309 1 20 HELIX 17 17 ASP A 310 THR A 315 5 6 HELIX 18 18 SER A 321 GLN A 348 1 28 HELIX 19 19 PRO A 360 ARG A 372 1 13 HELIX 20 20 LEU A 373 GLN A 379 5 7 HELIX 21 21 GLU A 380 GLU A 385 1 6 HELIX 22 22 ILE A 389 ASN A 398 1 10 HELIX 23 23 SER A 399 HIS A 401 5 3 HELIX 24 24 LEU A 415 LEU A 421 1 7 HELIX 25 25 PHE A 424 ALA A 426 5 3 HELIX 26 26 LEU A 427 ARG A 432 1 6 HELIX 27 27 GLU A 448 GLN A 470 1 23 HELIX 28 28 MET B 1 MET B 19 1 19 HELIX 29 29 GLY B 25 ASP B 47 1 23 HELIX 30 30 ASP B 47 LYS B 54 1 8 HELIX 31 31 LYS B 55 PHE B 65 1 11 HELIX 32 32 PHE B 65 ALA B 76 1 12 HELIX 33 33 ASN B 83 PHE B 113 1 31 HELIX 34 34 SER B 145 ARG B 165 1 21 HELIX 35 35 GLN B 167 VAL B 182 1 16 HELIX 36 36 GLY B 186 LYS B 199 1 14 HELIX 37 37 ASP B 201 ALA B 214 1 14 HELIX 38 38 PHE B 219 LEU B 234 1 16 HELIX 39 39 GLY B 245 SER B 263 1 19 HELIX 40 40 SER B 265 GLU B 267 5 3 HELIX 41 41 LYS B 268 GLN B 286 1 19 HELIX 42 42 ASN B 290 ARG B 309 1 20 HELIX 43 43 ASP B 310 THR B 315 5 6 HELIX 44 44 SER B 321 CYS B 345 1 25 HELIX 45 45 PRO B 346 GLN B 348 5 3 HELIX 46 46 PRO B 360 ARG B 372 1 13 HELIX 47 47 LEU B 373 GLN B 379 5 7 HELIX 48 48 GLU B 380 ARG B 386 1 7 HELIX 49 49 ILE B 389 SER B 399 1 11 HELIX 50 50 HIS B 403 SER B 408 5 6 HELIX 51 51 LEU B 415 GLU B 420 1 6 HELIX 52 52 PHE B 424 ARG B 432 5 9 HELIX 53 53 GLN B 451 GLN B 470 1 20 SHEET 1 A 2 GLN A 475 GLU A 479 0 SHEET 2 A 2 LYS A 482 ILE A 486 -1 O ILE A 486 N GLN A 475 SHEET 1 B 2 GLN B 475 ASN B 478 0 SHEET 2 B 2 LEU B 483 ILE B 486 -1 O ILE B 486 N GLN B 475 SITE 1 AC1 3 LYS A 66 ARG A 163 TYR A 164 SITE 1 AC2 4 LYS B 66 ARG B 163 TYR B 164 HOH B 669 SITE 1 AC3 4 SER B 184 GLY B 423 ARG B 428 HOH B 581 CRYST1 64.018 100.050 208.621 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004793 0.00000