HEADER HYDROLASE 20-DEC-04 1YBF TITLE CRYSTAL STRUCTURE OF AMP NUCLEOSIDASE FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMP NUCLEOSIDASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, T1840, AMP KEYWDS 3 NUCLEOSIDASE, BACTEROIDES THETAIOTAOMICRON, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.KRISHNAMURTHY,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 16-OCT-24 1YBF 1 REMARK REVDAT 4 03-FEB-21 1YBF 1 AUTHOR LINK REVDAT 3 13-JUL-11 1YBF 1 VERSN REVDAT 2 24-FEB-09 1YBF 1 VERSN REVDAT 1 04-JAN-05 1YBF 0 JRNL AUTH N.R.KRISHNAMURTHY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF AMP NUCLEOSIDASE FROM BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18600 REMARK 3 B22 (A**2) : 3.18600 REMARK 3 B33 (A**2) : -6.37200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.326 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SILICONE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CBASS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE & SHARP, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M MAGNESIUM FORMATE, BIS-TRIS REMARK 280 BUFFER, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.40500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.20250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.60750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.40500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.60750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.20250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 216.24000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 224 REMARK 465 GLN A 225 REMARK 465 LEU A 226 REMARK 465 VAL A 227 REMARK 465 THR A 228 REMARK 465 ASP A 229 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 ILE A 253 REMARK 465 LYS A 254 REMARK 465 HIS A 255 REMARK 465 ILE A 256 REMARK 465 ARG A 257 REMARK 465 PHE A 258 REMARK 465 ASN A 259 REMARK 465 TRP A 260 REMARK 465 GLU A 261 REMARK 465 GLY A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 MSE B 213 REMARK 465 PHE B 214 REMARK 465 PRO B 215 REMARK 465 GLU B 216 REMARK 465 GLY B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 THR B 220 REMARK 465 GLU B 221 REMARK 465 GLU B 222 REMARK 465 SER B 223 REMARK 465 ASP B 224 REMARK 465 GLN B 225 REMARK 465 LEU B 226 REMARK 465 VAL B 227 REMARK 465 THR B 228 REMARK 465 ASP B 229 REMARK 465 ILE B 253 REMARK 465 LYS B 254 REMARK 465 HIS B 255 REMARK 465 ILE B 256 REMARK 465 ARG B 257 REMARK 465 PHE B 258 REMARK 465 ASN B 259 REMARK 465 TRP B 260 REMARK 465 GLU B 261 REMARK 465 GLY B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 LYS C 101 REMARK 465 LEU C 102 REMARK 465 GLU C 103 REMARK 465 ASN C 104 REMARK 465 GLY C 217 REMARK 465 VAL C 218 REMARK 465 LYS C 219 REMARK 465 THR C 220 REMARK 465 GLU C 221 REMARK 465 GLU C 222 REMARK 465 SER C 223 REMARK 465 ASP C 224 REMARK 465 GLN C 225 REMARK 465 LEU C 226 REMARK 465 VAL C 227 REMARK 465 THR C 228 REMARK 465 ASP C 229 REMARK 465 SER C 251 REMARK 465 SER C 252 REMARK 465 ILE C 253 REMARK 465 LYS C 254 REMARK 465 HIS C 255 REMARK 465 ILE C 256 REMARK 465 ARG C 257 REMARK 465 PHE C 258 REMARK 465 ASN C 259 REMARK 465 TRP C 260 REMARK 465 GLU C 261 REMARK 465 GLY C 262 REMARK 465 HIS C 263 REMARK 465 HIS C 264 REMARK 465 HIS C 265 REMARK 465 HIS C 266 REMARK 465 HIS C 267 REMARK 465 HIS C 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 ARG C 211 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 230 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -56.78 -154.45 REMARK 500 TYR A 28 75.04 -113.91 REMARK 500 PHE A 41 -72.53 -69.73 REMARK 500 ALA A 42 -14.09 -49.33 REMARK 500 GLU A 43 -62.05 -91.63 REMARK 500 HIS A 44 -18.80 -47.40 REMARK 500 VAL A 47 152.56 167.50 REMARK 500 ALA A 59 98.68 -168.90 REMARK 500 ALA A 61 -69.44 -147.45 REMARK 500 GLU A 62 -113.80 -86.35 REMARK 500 MSE A 71 118.74 -17.30 REMARK 500 LEU A 83 5.25 -60.05 REMARK 500 ALA A 90 140.54 -175.78 REMARK 500 LEU A 102 47.69 -93.96 REMARK 500 ASN A 104 24.20 -149.83 REMARK 500 TRP A 166 -0.96 -153.60 REMARK 500 GLU A 187 -7.87 -160.02 REMARK 500 GLU A 222 98.00 -57.29 REMARK 500 ASN A 249 6.07 -59.17 REMARK 500 GLN B 19 -5.40 74.70 REMARK 500 GLU B 52 -54.47 -6.93 REMARK 500 ALA B 61 123.57 179.97 REMARK 500 ALA B 90 136.07 -179.28 REMARK 500 LEU B 102 -3.66 -52.56 REMARK 500 ASN B 104 -81.19 -19.11 REMARK 500 ALA B 105 91.66 69.47 REMARK 500 ALA B 114 170.33 175.17 REMARK 500 THR B 121 -50.11 -28.86 REMARK 500 PRO B 127 152.40 -47.96 REMARK 500 ASN B 148 17.02 -66.72 REMARK 500 LYS B 149 19.96 -144.37 REMARK 500 TRP B 166 -5.02 -151.17 REMARK 500 GLU B 167 16.10 -66.24 REMARK 500 ASP B 169 86.69 -64.00 REMARK 500 GLU B 187 -21.56 -144.22 REMARK 500 ALA B 232 -35.57 -32.11 REMARK 500 HIS C 44 -37.66 -131.13 REMARK 500 ALA C 90 134.09 -171.39 REMARK 500 ALA C 114 170.05 174.84 REMARK 500 ASN C 148 -15.31 -46.71 REMARK 500 GLU C 167 -31.06 -36.41 REMARK 500 ASP C 185 -167.07 -127.63 REMARK 500 GLU C 187 -30.57 -132.39 REMARK 500 ARG C 211 54.45 -155.90 REMARK 500 PRO C 215 -93.93 -55.83 REMARK 500 GLU C 248 -79.42 -61.31 REMARK 500 ASN C 249 -32.87 -34.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1840 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS A,B,C: RESIDUES 1-3:CLONING ARTIFACTS REMARK 999 RESIDUES 261-268: HIS TAGS. DBREF 1YBF A 1 268 PDB 1YBF 1YBF 1 268 DBREF 1YBF B 1 268 PDB 1YBF 1YBF 1 268 DBREF 1YBF C 1 268 PDB 1YBF 1YBF 1 268 SEQRES 1 A 268 MET SER LEU LYS THR LYS GLN GLU ILE VAL GLU ASN TRP SEQRES 2 A 268 LEU PRO ARG TYR THR GLN ARG GLN LEU ILE ASP PHE GLU SEQRES 3 A 268 PRO TYR ILE LEU LEU THR ASN PHE SER HIS TYR LEU HIS SEQRES 4 A 268 VAL PHE ALA GLU HIS TYR GLY VAL PRO ILE VAL GLY GLU SEQRES 5 A 268 HIS THR SER MSE PRO ASN ALA SER ALA GLU GLY VAL THR SEQRES 6 A 268 LEU ILE ASN PHE GLY MSE GLY SER ALA ASN ALA ALA THR SEQRES 7 A 268 ILE MSE ASP LEU LEU TRP ALA ILE HIS PRO LYS ALA VAL SEQRES 8 A 268 ILE PHE LEU GLY LYS CYS GLY GLY LEU LYS LEU GLU ASN SEQRES 9 A 268 ALA LEU GLY ASP TYR LEU LEU PRO ILE ALA ALA ILE ARG SEQRES 10 A 268 GLY GLU GLY THR SER ASN ASP TYR LEU PRO GLU GLU VAL SEQRES 11 A 268 PRO SER LEU PRO SER PHE SER VAL LEU ARG ALA ILE SER SEQRES 12 A 268 SER ALA ILE GLN ASN LYS GLY LYS ASP TYR TRP THR GLY SEQRES 13 A 268 THR VAL TYR THR THR ASN ARG ARG VAL TRP GLU TYR ASP SEQRES 14 A 268 GLU LYS PHE LYS ASP TYR LEU ARG SER THR HIS ALA SER SEQRES 15 A 268 GLY VAL ASP MSE GLU THR ALA THR LEU MSE THR VAL GLY SEQRES 16 A 268 PHE ALA ASN LYS ILE PRO MSE GLY ALA LEU LEU LEU ILE SEQRES 17 A 268 SER ASP ARG PRO MSE PHE PRO GLU GLY VAL LYS THR GLU SEQRES 18 A 268 GLU SER ASP GLN LEU VAL THR ASP ASN PHE ALA GLU GLU SEQRES 19 A 268 HIS LEU MSE LEU GLY ILE ASP ALA LEU GLU ILE ILE ARG SEQRES 20 A 268 GLU ASN LYS SER SER ILE LYS HIS ILE ARG PHE ASN TRP SEQRES 21 A 268 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 268 MET SER LEU LYS THR LYS GLN GLU ILE VAL GLU ASN TRP SEQRES 2 B 268 LEU PRO ARG TYR THR GLN ARG GLN LEU ILE ASP PHE GLU SEQRES 3 B 268 PRO TYR ILE LEU LEU THR ASN PHE SER HIS TYR LEU HIS SEQRES 4 B 268 VAL PHE ALA GLU HIS TYR GLY VAL PRO ILE VAL GLY GLU SEQRES 5 B 268 HIS THR SER MSE PRO ASN ALA SER ALA GLU GLY VAL THR SEQRES 6 B 268 LEU ILE ASN PHE GLY MSE GLY SER ALA ASN ALA ALA THR SEQRES 7 B 268 ILE MSE ASP LEU LEU TRP ALA ILE HIS PRO LYS ALA VAL SEQRES 8 B 268 ILE PHE LEU GLY LYS CYS GLY GLY LEU LYS LEU GLU ASN SEQRES 9 B 268 ALA LEU GLY ASP TYR LEU LEU PRO ILE ALA ALA ILE ARG SEQRES 10 B 268 GLY GLU GLY THR SER ASN ASP TYR LEU PRO GLU GLU VAL SEQRES 11 B 268 PRO SER LEU PRO SER PHE SER VAL LEU ARG ALA ILE SER SEQRES 12 B 268 SER ALA ILE GLN ASN LYS GLY LYS ASP TYR TRP THR GLY SEQRES 13 B 268 THR VAL TYR THR THR ASN ARG ARG VAL TRP GLU TYR ASP SEQRES 14 B 268 GLU LYS PHE LYS ASP TYR LEU ARG SER THR HIS ALA SER SEQRES 15 B 268 GLY VAL ASP MSE GLU THR ALA THR LEU MSE THR VAL GLY SEQRES 16 B 268 PHE ALA ASN LYS ILE PRO MSE GLY ALA LEU LEU LEU ILE SEQRES 17 B 268 SER ASP ARG PRO MSE PHE PRO GLU GLY VAL LYS THR GLU SEQRES 18 B 268 GLU SER ASP GLN LEU VAL THR ASP ASN PHE ALA GLU GLU SEQRES 19 B 268 HIS LEU MSE LEU GLY ILE ASP ALA LEU GLU ILE ILE ARG SEQRES 20 B 268 GLU ASN LYS SER SER ILE LYS HIS ILE ARG PHE ASN TRP SEQRES 21 B 268 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 268 MET SER LEU LYS THR LYS GLN GLU ILE VAL GLU ASN TRP SEQRES 2 C 268 LEU PRO ARG TYR THR GLN ARG GLN LEU ILE ASP PHE GLU SEQRES 3 C 268 PRO TYR ILE LEU LEU THR ASN PHE SER HIS TYR LEU HIS SEQRES 4 C 268 VAL PHE ALA GLU HIS TYR GLY VAL PRO ILE VAL GLY GLU SEQRES 5 C 268 HIS THR SER MSE PRO ASN ALA SER ALA GLU GLY VAL THR SEQRES 6 C 268 LEU ILE ASN PHE GLY MSE GLY SER ALA ASN ALA ALA THR SEQRES 7 C 268 ILE MSE ASP LEU LEU TRP ALA ILE HIS PRO LYS ALA VAL SEQRES 8 C 268 ILE PHE LEU GLY LYS CYS GLY GLY LEU LYS LEU GLU ASN SEQRES 9 C 268 ALA LEU GLY ASP TYR LEU LEU PRO ILE ALA ALA ILE ARG SEQRES 10 C 268 GLY GLU GLY THR SER ASN ASP TYR LEU PRO GLU GLU VAL SEQRES 11 C 268 PRO SER LEU PRO SER PHE SER VAL LEU ARG ALA ILE SER SEQRES 12 C 268 SER ALA ILE GLN ASN LYS GLY LYS ASP TYR TRP THR GLY SEQRES 13 C 268 THR VAL TYR THR THR ASN ARG ARG VAL TRP GLU TYR ASP SEQRES 14 C 268 GLU LYS PHE LYS ASP TYR LEU ARG SER THR HIS ALA SER SEQRES 15 C 268 GLY VAL ASP MSE GLU THR ALA THR LEU MSE THR VAL GLY SEQRES 16 C 268 PHE ALA ASN LYS ILE PRO MSE GLY ALA LEU LEU LEU ILE SEQRES 17 C 268 SER ASP ARG PRO MSE PHE PRO GLU GLY VAL LYS THR GLU SEQRES 18 C 268 GLU SER ASP GLN LEU VAL THR ASP ASN PHE ALA GLU GLU SEQRES 19 C 268 HIS LEU MSE LEU GLY ILE ASP ALA LEU GLU ILE ILE ARG SEQRES 20 C 268 GLU ASN LYS SER SER ILE LYS HIS ILE ARG PHE ASN TRP SEQRES 21 C 268 GLU GLY HIS HIS HIS HIS HIS HIS MODRES 1YBF MSE A 56 MET SELENOMETHIONINE MODRES 1YBF MSE A 71 MET SELENOMETHIONINE MODRES 1YBF MSE A 80 MET SELENOMETHIONINE MODRES 1YBF MSE A 186 MET SELENOMETHIONINE MODRES 1YBF MSE A 192 MET SELENOMETHIONINE MODRES 1YBF MSE A 202 MET SELENOMETHIONINE MODRES 1YBF MSE A 213 MET SELENOMETHIONINE MODRES 1YBF MSE A 237 MET SELENOMETHIONINE MODRES 1YBF MSE B 56 MET SELENOMETHIONINE MODRES 1YBF MSE B 71 MET SELENOMETHIONINE MODRES 1YBF MSE B 80 MET SELENOMETHIONINE MODRES 1YBF MSE B 186 MET SELENOMETHIONINE MODRES 1YBF MSE B 192 MET SELENOMETHIONINE MODRES 1YBF MSE B 202 MET SELENOMETHIONINE MODRES 1YBF MSE B 237 MET SELENOMETHIONINE MODRES 1YBF MSE C 56 MET SELENOMETHIONINE MODRES 1YBF MSE C 71 MET SELENOMETHIONINE MODRES 1YBF MSE C 80 MET SELENOMETHIONINE MODRES 1YBF MSE C 186 MET SELENOMETHIONINE MODRES 1YBF MSE C 192 MET SELENOMETHIONINE MODRES 1YBF MSE C 202 MET SELENOMETHIONINE MODRES 1YBF MSE C 213 MET SELENOMETHIONINE MODRES 1YBF MSE C 237 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 71 8 HET MSE A 80 8 HET MSE A 186 8 HET MSE A 192 8 HET MSE A 202 8 HET MSE A 213 8 HET MSE A 237 8 HET MSE B 56 8 HET MSE B 71 8 HET MSE B 80 8 HET MSE B 186 8 HET MSE B 192 8 HET MSE B 202 8 HET MSE B 237 8 HET MSE C 56 8 HET MSE C 71 8 HET MSE C 80 8 HET MSE C 186 8 HET MSE C 192 8 HET MSE C 202 8 HET MSE C 213 8 HET MSE C 237 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 23(C5 H11 N O2 SE) FORMUL 4 HOH *16(H2 O) HELIX 1 1 THR A 5 THR A 18 1 14 HELIX 2 2 PHE A 34 GLY A 46 1 13 HELIX 3 3 GLY A 72 LEU A 83 1 12 HELIX 4 4 THR A 121 TYR A 125 5 5 HELIX 5 5 SER A 135 ASN A 148 1 14 HELIX 6 6 ASP A 169 THR A 179 1 11 HELIX 7 7 GLU A 187 ASN A 198 1 12 HELIX 8 8 PHE A 231 ASN A 249 1 19 HELIX 9 9 THR B 5 GLN B 19 1 15 HELIX 10 10 GLN B 21 PHE B 25 5 5 HELIX 11 11 PHE B 34 TYR B 45 1 12 HELIX 12 12 GLY B 72 LEU B 83 1 12 HELIX 13 13 TRP B 84 ILE B 86 5 3 HELIX 14 14 GLY B 120 TYR B 125 5 6 HELIX 15 15 SER B 135 ASN B 148 1 14 HELIX 16 16 ASP B 169 THR B 179 1 11 HELIX 17 17 GLU B 187 ASN B 198 1 12 HELIX 18 18 PHE B 231 SER B 252 1 22 HELIX 19 19 THR C 5 GLN C 19 1 15 HELIX 20 20 GLN C 21 PHE C 25 5 5 HELIX 21 21 PHE C 34 GLY C 46 1 13 HELIX 22 22 GLY C 72 LEU C 83 1 12 HELIX 23 23 TRP C 84 ILE C 86 5 3 HELIX 24 24 GLY C 120 TYR C 125 5 6 HELIX 25 25 SER C 135 ASN C 148 1 14 HELIX 26 26 ASP C 169 SER C 178 1 10 HELIX 27 27 GLU C 187 ASN C 198 1 12 HELIX 28 28 PHE C 231 LYS C 250 1 20 SHEET 1 A 7 VAL A 64 ASN A 68 0 SHEET 2 A 7 TYR A 28 THR A 32 1 N LEU A 30 O ILE A 67 SHEET 3 A 7 ALA A 90 CYS A 97 1 O LEU A 94 N LEU A 31 SHEET 4 A 7 MSE A 202 ILE A 208 1 O LEU A 207 N GLY A 95 SHEET 5 A 7 TYR A 109 ARG A 117 -1 N LEU A 110 O LEU A 206 SHEET 6 A 7 TRP A 154 THR A 160 1 O TRP A 154 N LEU A 111 SHEET 7 A 7 GLY A 183 ASP A 185 1 O GLY A 183 N TYR A 159 SHEET 1 B 9 ASN B 58 ALA B 61 0 SHEET 2 B 9 VAL B 64 ASN B 68 -1 O LEU B 66 N ALA B 59 SHEET 3 B 9 TYR B 28 THR B 32 1 N LEU B 30 O ILE B 67 SHEET 4 B 9 ALA B 90 GLY B 99 1 O LEU B 94 N LEU B 31 SHEET 5 B 9 MSE B 202 SER B 209 1 O GLY B 203 N PHE B 93 SHEET 6 B 9 TYR B 109 GLY B 118 -1 N LEU B 110 O LEU B 206 SHEET 7 B 9 TYR B 153 THR B 161 1 O TRP B 154 N LEU B 111 SHEET 8 B 9 GLY B 183 ASP B 185 1 O GLY B 183 N TYR B 159 SHEET 9 B 9 ALA B 90 GLY B 99 -1 N GLY B 98 O VAL B 184 SHEET 1 C 9 ASN C 58 ALA C 61 0 SHEET 2 C 9 VAL C 64 ASN C 68 -1 O LEU C 66 N ALA C 59 SHEET 3 C 9 TYR C 28 THR C 32 1 N LEU C 30 O THR C 65 SHEET 4 C 9 ALA C 90 GLY C 99 1 O ILE C 92 N LEU C 31 SHEET 5 C 9 MSE C 202 SER C 209 1 O LEU C 205 N PHE C 93 SHEET 6 C 9 TYR C 109 ARG C 117 -1 N LEU C 110 O LEU C 206 SHEET 7 C 9 TYR C 153 THR C 160 1 O TRP C 154 N TYR C 109 SHEET 8 C 9 GLY C 183 ASP C 185 1 O GLY C 183 N TYR C 159 SHEET 9 C 9 ALA C 90 GLY C 99 -1 N GLY C 98 O VAL C 184 LINK C SER A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N PRO A 57 1555 1555 1.34 LINK C GLY A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N GLY A 72 1555 1555 1.33 LINK C ILE A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N ASP A 81 1555 1555 1.33 LINK C ASP A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N GLU A 187 1555 1555 1.33 LINK C LEU A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N THR A 193 1555 1555 1.33 LINK C PRO A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N GLY A 203 1555 1555 1.33 LINK C PRO A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N PHE A 214 1555 1555 1.33 LINK C LEU A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N LEU A 238 1555 1555 1.33 LINK C SER B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N PRO B 57 1555 1555 1.35 LINK C GLY B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N GLY B 72 1555 1555 1.33 LINK C ILE B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N ASP B 81 1555 1555 1.33 LINK C ASP B 185 N MSE B 186 1555 1555 1.33 LINK C MSE B 186 N GLU B 187 1555 1555 1.33 LINK C LEU B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N THR B 193 1555 1555 1.33 LINK C PRO B 201 N MSE B 202 1555 1555 1.33 LINK C MSE B 202 N GLY B 203 1555 1555 1.33 LINK C LEU B 236 N MSE B 237 1555 1555 1.32 LINK C MSE B 237 N LEU B 238 1555 1555 1.33 LINK C SER C 55 N MSE C 56 1555 1555 1.33 LINK C MSE C 56 N PRO C 57 1555 1555 1.34 LINK C GLY C 70 N MSE C 71 1555 1555 1.33 LINK C MSE C 71 N GLY C 72 1555 1555 1.32 LINK C ILE C 79 N MSE C 80 1555 1555 1.33 LINK C MSE C 80 N ASP C 81 1555 1555 1.33 LINK C ASP C 185 N MSE C 186 1555 1555 1.33 LINK C MSE C 186 N GLU C 187 1555 1555 1.33 LINK C LEU C 191 N MSE C 192 1555 1555 1.33 LINK C MSE C 192 N THR C 193 1555 1555 1.33 LINK C PRO C 201 N MSE C 202 1555 1555 1.34 LINK C MSE C 202 N GLY C 203 1555 1555 1.33 LINK C PRO C 212 N MSE C 213 1555 1555 1.33 LINK C MSE C 213 N PHE C 214 1555 1555 1.33 LINK C LEU C 236 N MSE C 237 1555 1555 1.33 LINK C MSE C 237 N LEU C 238 1555 1555 1.33 CRYST1 108.120 108.120 160.810 90.00 90.00 90.00 P 41 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006219 0.00000